data_2Y4Z
#
_model_server_result.job_id            TCrXevABbWNbCr3F4CYSIg 
_model_server_result.datetime_utc      '2024-10-10 07:19:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y4z 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1136}' 
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_entry.id    2Y4Z 
#
_exptl.entry_id    2Y4Z 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.91 
_cell.angle_gamma         90 
_cell.entry_id            2Y4Z 
_cell.length_a            71.88 
_cell.length_b            33.647 
_cell.length_c            59.32 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2Y4Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2Y4Z 
_atom_sites.fract_transf_matrix[1][1]    0.013912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005595 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1136 1136 GOL GOL . 
C 3 HOH A 1 2001 2001 HOH HOH . 
C 3 HOH A 2 2002 2002 HOH HOH . 
C 3 HOH A 3 2003 2003 HOH HOH . 
C 3 HOH A 4 2004 2004 HOH HOH . 
C 3 HOH A 5 2005 2005 HOH HOH . 
C 3 HOH A 6 2006 2006 HOH HOH . 
C 3 HOH A 7 2007 2007 HOH HOH . 
C 3 HOH A 8 2008 2008 HOH HOH . 
C 3 HOH A 9 2009 2009 HOH HOH . 
C 3 HOH A 10 2010 2010 HOH HOH . 
C 3 HOH A 11 2011 2011 HOH HOH . 
C 3 HOH A 12 2012 2012 HOH HOH . 
C 3 HOH A 13 2013 2013 HOH HOH . 
C 3 HOH A 14 2014 2014 HOH HOH . 
C 3 HOH A 15 2015 2015 HOH HOH . 
C 3 HOH A 16 2016 2016 HOH HOH . 
C 3 HOH A 17 2017 2017 HOH HOH . 
C 3 HOH A 18 2018 2018 HOH HOH . 
C 3 HOH A 19 2019 2019 HOH HOH . 
C 3 HOH A 20 2020 2020 HOH HOH . 
C 3 HOH A 21 2021 2021 HOH HOH . 
C 3 HOH A 22 2022 2022 HOH HOH . 
C 3 HOH A 23 2023 2023 HOH HOH . 
C 3 HOH A 24 2024 2024 HOH HOH . 
C 3 HOH A 25 2025 2025 HOH HOH . 
C 3 HOH A 26 2026 2026 HOH HOH . 
C 3 HOH A 27 2027 2027 HOH HOH . 
C 3 HOH A 28 2028 2028 HOH HOH . 
C 3 HOH A 29 2029 2029 HOH HOH . 
C 3 HOH A 30 2030 2030 HOH HOH . 
C 3 HOH A 31 2031 2031 HOH HOH . 
C 3 HOH A 32 2032 2032 HOH HOH . 
C 3 HOH A 33 2033 2033 HOH HOH . 
C 3 HOH A 34 2034 2034 HOH HOH . 
C 3 HOH A 35 2035 2035 HOH HOH . 
C 3 HOH A 36 2036 2036 HOH HOH . 
C 3 HOH A 37 2037 2037 HOH HOH . 
C 3 HOH A 38 2038 2038 HOH HOH . 
C 3 HOH A 39 2039 2039 HOH HOH . 
C 3 HOH A 40 2040 2040 HOH HOH . 
C 3 HOH A 41 2041 2041 HOH HOH . 
C 3 HOH A 42 2042 2042 HOH HOH . 
C 3 HOH A 43 2043 2043 HOH HOH . 
C 3 HOH A 44 2044 2044 HOH HOH . 
C 3 HOH A 45 2045 2045 HOH HOH . 
C 3 HOH A 46 2046 2046 HOH HOH . 
C 3 HOH A 47 2047 2047 HOH HOH . 
C 3 HOH A 48 2048 2048 HOH HOH . 
C 3 HOH A 49 2049 2049 HOH HOH . 
C 3 HOH A 50 2050 2050 HOH HOH . 
C 3 HOH A 51 2051 2051 HOH HOH . 
C 3 HOH A 52 2052 2052 HOH HOH . 
C 3 HOH A 53 2053 2053 HOH HOH . 
C 3 HOH A 54 2054 2054 HOH HOH . 
C 3 HOH A 55 2055 2055 HOH HOH . 
C 3 HOH A 56 2056 2056 HOH HOH . 
C 3 HOH A 57 2057 2057 HOH HOH . 
C 3 HOH A 58 2058 2058 HOH HOH . 
C 3 HOH A 59 2059 2059 HOH HOH . 
C 3 HOH A 60 2060 2060 HOH HOH . 
C 3 HOH A 61 2061 2061 HOH HOH . 
C 3 HOH A 62 2062 2062 HOH HOH . 
C 3 HOH A 63 2063 2063 HOH HOH . 
C 3 HOH A 64 2064 2064 HOH HOH . 
C 3 HOH A 65 2065 2065 HOH HOH . 
C 3 HOH A 66 2066 2066 HOH HOH . 
C 3 HOH A 67 2067 2067 HOH HOH . 
C 3 HOH A 68 2068 2068 HOH HOH . 
C 3 HOH A 69 2069 2069 HOH HOH . 
C 3 HOH A 70 2070 2070 HOH HOH . 
C 3 HOH A 71 2071 2071 HOH HOH . 
C 3 HOH A 72 2072 2072 HOH HOH . 
C 3 HOH A 73 2073 2073 HOH HOH . 
C 3 HOH A 74 2074 2074 HOH HOH . 
C 3 HOH A 75 2075 2075 HOH HOH . 
C 3 HOH A 76 2076 2076 HOH HOH . 
C 3 HOH A 77 2077 2077 HOH HOH . 
C 3 HOH A 78 2078 2078 HOH HOH . 
C 3 HOH A 79 2079 2079 HOH HOH . 
C 3 HOH A 80 2080 2080 HOH HOH . 
C 3 HOH A 81 2081 2081 HOH HOH . 
C 3 HOH A 82 2082 2082 HOH HOH . 
C 3 HOH A 83 2083 2083 HOH HOH . 
C 3 HOH A 84 2084 2084 HOH HOH . 
C 3 HOH A 85 2085 2085 HOH HOH . 
C 3 HOH A 86 2086 2086 HOH HOH . 
C 3 HOH A 87 2087 2087 HOH HOH . 
C 3 HOH A 88 2088 2088 HOH HOH . 
C 3 HOH A 89 2089 2089 HOH HOH . 
C 3 HOH A 90 2090 2090 HOH HOH . 
C 3 HOH A 91 2091 2091 HOH HOH . 
C 3 HOH A 92 2092 2092 HOH HOH . 
C 3 HOH A 93 2093 2093 HOH HOH . 
C 3 HOH A 94 2094 2094 HOH HOH . 
C 3 HOH A 95 2095 2095 HOH HOH . 
C 3 HOH A 96 2096 2096 HOH HOH . 
C 3 HOH A 97 2097 2097 HOH HOH . 
C 3 HOH A 98 2098 2098 HOH HOH . 
C 3 HOH A 99 2099 2099 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 29.782 1.353 1.189 1 45.17 ? C1 GOL 1136 A 1 
HETATM 2 O O1 GOL . . . B 2 29.449 2.329 2.153 1 33.16 ? O1 GOL 1136 A 1 
HETATM 3 C C2 GOL . . . B 2 31.162 1.646 0.624 1 50.29 ? C2 GOL 1136 A 1 
HETATM 4 O O2 GOL . . . B 2 32.151 1.504 1.632 1 45.03 ? O2 GOL 1136 A 1 
HETATM 5 C C3 GOL . . . B 2 31.413 0.66 -0.509 1 55.38 ? C3 GOL 1136 A 1 
HETATM 6 O O3 GOL . . . B 2 32.539 1.085 -1.239 1 57.36 ? O3 GOL 1136 A 1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
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