data_2Y54 # _model_server_result.job_id 8CmgJyaZfPMM2XT-W8gbUQ _model_server_result.datetime_utc '2024-11-16 19:32:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 2Y54 # _exptl.entry_id 2Y54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 231.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y54 _cell.length_a 216.42 _cell.length_b 216.42 _cell.length_c 216.42 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 I N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C14 H17 N O2' _chem_comp.formula_weight 231.29 _chem_comp.id V63 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R,5S)-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C11 V63 doub 360 n y C1 C14 V63 sing 361 n y C2 C3 V63 sing 362 n y C2 C7 V63 doub 363 n y C3 C14 V63 doub 364 n y C4 C10 V63 sing 365 n n C4 C12 V63 sing 366 n n C4 N V63 sing 367 n n C5 C14 V63 sing 368 n n C5 O15 V63 doub 369 n n C5 O17 V63 sing 370 n n C6 C8 V63 sing 371 n n C6 C13 V63 sing 372 n n C6 N V63 sing 373 n n C7 C11 V63 sing 374 n y C8 C80 V63 sing 375 n n C10 C80 V63 sing 376 n n C12 C13 V63 sing 377 n n C80 O17 V63 sing 378 n n C1 H1 V63 sing 379 n n C11 H11 V63 sing 380 n n C2 H2 V63 sing 381 n n C3 H3 V63 sing 382 n n C7 H7 V63 sing 383 n n C4 H4 V63 sing 384 n n C10 H101 V63 sing 385 n n C10 H102 V63 sing 386 n n C12 H121 V63 sing 387 n n C12 H122 V63 sing 388 n n N H V63 sing 389 n n C6 H6 V63 sing 390 n n C8 H81C V63 sing 391 n n C8 H82C V63 sing 392 n n C13 H131 V63 sing 393 n n C13 H132 V63 sing 394 n n C80 H80 V63 sing 395 n n # _atom_sites.entry_id 2Y54 _atom_sites.fract_transf_matrix[1][1] 0.004621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 V63 A 1 301 301 V63 V63 . G 3 SO4 A 1 601 601 SO4 SO4 . H 4 CL A 1 701 701 CL CL . I 2 V63 B 1 301 301 V63 V63 . J 3 SO4 B 1 601 601 SO4 SO4 . K 4 CL B 1 701 701 CL CL . L 4 CL B 1 702 702 CL CL . M 2 V63 C 1 301 301 V63 V63 . N 4 CL C 1 701 701 CL CL . O 2 V63 D 1 301 301 V63 V63 . P 4 CL D 1 701 701 CL CL . Q 2 V63 E 1 301 301 V63 V63 . R 4 CL E 1 701 701 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 V63 . . . I 2 54.734 33.754 -33.548 1 73.7 ? C3 V63 301 B 1 HETATM 2 C C11 V63 . . . I 2 52.485 32.835 -32.163 1 74.87 ? C11 V63 301 B 1 HETATM 3 C C1 V63 . . . I 2 53.759 32.648 -31.624 1 74.45 ? C1 V63 301 B 1 HETATM 4 C C13 V63 . . . I 2 58.908 35.817 -33.106 1 70.64 ? C13 V63 301 B 1 HETATM 5 C C5 V63 . . . I 2 56.266 32.911 -31.747 1 73.52 ? C5 V63 301 B 1 HETATM 6 C C10 V63 . . . I 2 59.753 32.778 -32.929 1 71.31 ? C10 V63 301 B 1 HETATM 7 C C7 V63 . . . I 2 52.341 33.484 -33.391 1 74.65 ? C7 V63 301 B 1 HETATM 8 C C8 V63 . . . I 2 58.943 34.379 -31.086 1 70.61 ? C8 V63 301 B 1 HETATM 9 C C6 V63 . . . I 2 59.705 35.446 -31.865 1 70.84 ? C6 V63 301 B 1 HETATM 10 C C2 V63 . . . I 2 53.462 33.945 -34.084 1 74.09 ? C2 V63 301 B 1 HETATM 11 C C12 V63 . . . I 2 59.429 34.881 -34.189 1 70.94 ? C12 V63 301 B 1 HETATM 12 C C4 V63 . . . I 2 60.465 34.001 -33.507 1 71.34 ? C4 V63 301 B 1 HETATM 13 C C14 V63 . . . I 2 54.887 33.107 -32.317 1 73.85 ? C14 V63 301 B 1 HETATM 14 C C80 V63 . . . I 2 58.664 33.115 -31.905 1 71.24 ? C80 V63 301 B 1 HETATM 15 O O15 V63 . . . I 2 56.418 32.476 -30.611 1 73.95 ? O15 V63 301 B 1 HETATM 16 N N V63 . . . I 2 60.938 34.808 -32.373 1 71.5 ? N V63 301 B 1 HETATM 17 O O17 V63 . . . I 2 57.416 33.237 -32.576 1 72.37 ? O17 V63 301 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #