data_2Y56
#
_model_server_result.job_id            FlFwWmP3opUen-MS70L72Q 
_model_server_result.datetime_utc      '2024-11-23 11:22:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":301}' 
#
_entry.id    2Y56 
#
_exptl.entry_id    2Y56 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENYL-ETHYL]-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Y56 
_cell.length_a            218.93 
_cell.length_b            218.93 
_cell.length_c            218.93 
_cell.Z_PDB               120 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y56 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 M N N 
? 2 T N N 
? 2 AA N N 
? 2 KA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C22 H25 N O3' 
_chem_comp.formula_weight    351.439 
_chem_comp.id                V11 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1S,5R)-8-[(2R)-2-HYDROXY-2-PHENYL-ETHYL]-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C10 V11 sing 373 n n 
N C11 V11 sing 374 n n 
N C15 V11 sing 375 n n 
C1 O1 V11 sing 376 n n 
C1 C2 V11 sing 377 n n 
C1 O2 V11 doub 378 n n 
O1 C8 V11 sing 379 n n 
C2 C3 V11 doub 380 n y 
C2 C7 V11 sing 381 n y 
C3 C4 V11 sing 382 n y 
O3 C16 V11 sing 383 n n 
C4 C5 V11 doub 384 n y 
C5 C6 V11 sing 385 n y 
C6 C7 V11 doub 386 n y 
C8 C9 V11 sing 387 n n 
C8 C12 V11 sing 388 n n 
C9 C10 V11 sing 389 n n 
C10 C14 V11 sing 390 n n 
C11 C12 V11 sing 391 n n 
C11 C13 V11 sing 392 n n 
C13 C14 V11 sing 393 n n 
C15 C16 V11 sing 394 n n 
C16 C17 V11 sing 395 n n 
C17 C18 V11 doub 396 n y 
C17 C22 V11 sing 397 n y 
C18 C19 V11 sing 398 n y 
C19 C20 V11 doub 399 n y 
C20 C21 V11 sing 400 n y 
C21 C22 V11 doub 401 n y 
C7 H7 V11 sing 402 n n 
C3 H3 V11 sing 403 n n 
C6 H6 V11 sing 404 n n 
C5 H5 V11 sing 405 n n 
C4 H4 V11 sing 406 n n 
C8 H8 V11 sing 407 n n 
C12 H121 V11 sing 408 n n 
C12 H122 V11 sing 409 n n 
C9 H91C V11 sing 410 n n 
C9 H92C V11 sing 411 n n 
C11 H11 V11 sing 412 n n 
C13 H131 V11 sing 413 n n 
C13 H132 V11 sing 414 n n 
C14 H141 V11 sing 415 n n 
C14 H142 V11 sing 416 n n 
C10 H10 V11 sing 417 n n 
C15 H151 V11 sing 418 n n 
C15 H152 V11 sing 419 n n 
C16 H16 V11 sing 420 n n 
O3 HA V11 sing 421 n n 
C22 H22 V11 sing 422 n n 
C18 H18 V11 sing 423 n n 
C21 H21 V11 sing 424 n n 
C20 H20 V11 sing 425 n n 
C19 H19 V11 sing 426 n n 
#
_atom_sites.entry_id                     2Y56 
_atom_sites.fract_transf_matrix[1][1]    0.004568 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 V11 A 1 301 301 V11 V11 . 
G 3 CL A 1 501 501 CL CL . 
H 3 CL A 1 502 502 CL CL . 
I 4 SO4 A 1 601 601 SO4 SO4 . 
J 4 SO4 A 1 602 602 SO4 SO4 . 
K 5 GOL A 1 701 701 GOL GOL . 
L 5 GOL A 1 702 702 GOL GOL . 
M 2 V11 B 1 301 301 V11 V11 . 
N 3 CL B 1 501 501 CL CL . 
O 3 CL B 1 502 502 CL CL . 
P 3 CL B 1 503 503 CL CL . 
Q 4 SO4 B 1 601 601 SO4 SO4 . 
R 4 SO4 B 1 602 602 SO4 SO4 . 
S 5 GOL B 1 701 701 GOL GOL . 
T 2 V11 C 1 301 301 V11 V11 . 
U 3 CL C 1 501 501 CL CL . 
V 3 CL C 1 502 502 CL CL . 
W 4 SO4 C 1 601 601 SO4 SO4 . 
X 4 SO4 C 1 602 602 SO4 SO4 . 
Y 5 GOL C 1 701 701 GOL GOL . 
Z 5 GOL C 1 702 702 GOL GOL . 
AA 2 V11 D 1 301 301 V11 V11 . 
BA 3 CL D 1 501 501 CL CL . 
CA 3 CL D 1 502 502 CL CL . 
DA 3 CL D 1 503 503 CL CL . 
EA 4 SO4 D 1 601 601 SO4 SO4 . 
FA 4 SO4 D 1 602 602 SO4 SO4 . 
GA 4 SO4 D 1 603 603 SO4 SO4 . 
HA 5 GOL D 1 701 701 GOL GOL . 
IA 5 GOL D 1 702 702 GOL GOL . 
JA 5 GOL D 1 703 703 GOL GOL . 
KA 2 V11 E 1 301 301 V11 V11 . 
LA 3 CL E 1 501 501 CL CL . 
MA 3 CL E 1 502 502 CL CL . 
NA 4 SO4 E 1 601 601 SO4 SO4 . 
OA 4 SO4 E 1 602 602 SO4 SO4 . 
PA 4 SO4 E 1 603 603 SO4 SO4 . 
QA 4 SO4 E 1 604 604 SO4 SO4 . 
RA 4 SO4 E 1 605 605 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 V11 . . . KA 2 99.841 3.077 -42.907 1 102.41 ? O2 V11 301 E 1 
HETATM 2 C C1 V11 . . . KA 2 99.919 3.968 -43.742 1 102.08 ? C1 V11 301 E 1 
HETATM 3 C C2 V11 . . . KA 2 101.006 5.008 -43.674 1 102.56 ? C2 V11 301 E 1 
HETATM 4 C C7 V11 . . . KA 2 101.296 5.781 -44.804 1 103.06 ? C7 V11 301 E 1 
HETATM 5 C C6 V11 . . . KA 2 102.275 6.783 -44.766 1 102.74 ? C6 V11 301 E 1 
HETATM 6 C C5 V11 . . . KA 2 102.97 7.021 -43.58 1 102.01 ? C5 V11 301 E 1 
HETATM 7 C C4 V11 . . . KA 2 102.68 6.256 -42.446 1 102.79 ? C4 V11 301 E 1 
HETATM 8 C C3 V11 . . . KA 2 101.701 5.255 -42.488 1 103.24 ? C3 V11 301 E 1 
HETATM 9 O O1 V11 . . . KA 2 98.925 4.098 -44.806 1 101.96 ? O1 V11 301 E 1 
HETATM 10 C C8 V11 . . . KA 2 98.031 3.004 -45.035 1 100.41 ? C8 V11 301 E 1 
HETATM 11 C C12 V11 . . . KA 2 98.752 1.896 -45.818 1 100.58 ? C12 V11 301 E 1 
HETATM 12 C C11 V11 . . . KA 2 98.613 1.992 -47.344 1 100.3 ? C11 V11 301 E 1 
HETATM 13 C C13 V11 . . . KA 2 99.193 3.322 -47.835 1 98.72 ? C13 V11 301 E 1 
HETATM 14 C C14 V11 . . . KA 2 98.038 4.306 -47.789 1 98.17 ? C14 V11 301 E 1 
HETATM 15 C C10 V11 . . . KA 2 96.856 3.473 -47.286 1 99.44 ? C10 V11 301 E 1 
HETATM 16 C C9 V11 . . . KA 2 96.791 3.554 -45.754 1 99.01 ? C9 V11 301 E 1 
HETATM 17 N N V11 . . . KA 2 97.168 2.066 -47.632 1 100.76 ? N V11 301 E 1 
HETATM 18 C C15 V11 . . . KA 2 96.894 1.758 -49.06 1 101.19 ? C15 V11 301 E 1 
HETATM 19 C C16 V11 . . . KA 2 95.827 0.666 -49.216 1 100.99 ? C16 V11 301 E 1 
HETATM 20 O O3 V11 . . . KA 2 96.385 -0.626 -48.939 1 99.4 ? O3 V11 301 E 1 
HETATM 21 C C17 V11 . . . KA 2 95.174 0.682 -50.561 1 102.41 ? C17 V11 301 E 1 
HETATM 22 C C22 V11 . . . KA 2 95.924 0.751 -51.742 1 102.62 ? C22 V11 301 E 1 
HETATM 23 C C21 V11 . . . KA 2 95.289 0.757 -52.996 1 102.23 ? C21 V11 301 E 1 
HETATM 24 C C20 V11 . . . KA 2 93.897 0.684 -53.096 1 101.72 ? C20 V11 301 E 1 
HETATM 25 C C19 V11 . . . KA 2 93.144 0.605 -51.924 1 102.14 ? C19 V11 301 E 1 
HETATM 26 C C18 V11 . . . KA 2 93.778 0.601 -50.669 1 102.74 ? C18 V11 301 E 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           816 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           26 
#