data_2Y56 # _model_server_result.job_id UxgvpiOk-w9kRhQx_FBRxA _model_server_result.datetime_utc '2024-11-08 01:09:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":601}' # _entry.id 2Y56 # _exptl.entry_id 2Y56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y56 _cell.length_a 218.93 _cell.length_b 218.93 _cell.length_c 218.93 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 Q N N ? 4 R N N ? 4 W N N ? 4 X N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 NA N N ? 4 OA N N ? 4 PA N N ? 4 QA N N ? 4 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 301 n n S O2 SO4 doub 302 n n S O3 SO4 sing 303 n n S O4 SO4 sing 304 n n # _atom_sites.entry_id 2Y56 _atom_sites.fract_transf_matrix[1][1] 0.004568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 V11 A 1 301 301 V11 V11 . G 3 CL A 1 501 501 CL CL . H 3 CL A 1 502 502 CL CL . I 4 SO4 A 1 601 601 SO4 SO4 . J 4 SO4 A 1 602 602 SO4 SO4 . K 5 GOL A 1 701 701 GOL GOL . L 5 GOL A 1 702 702 GOL GOL . M 2 V11 B 1 301 301 V11 V11 . N 3 CL B 1 501 501 CL CL . O 3 CL B 1 502 502 CL CL . P 3 CL B 1 503 503 CL CL . Q 4 SO4 B 1 601 601 SO4 SO4 . R 4 SO4 B 1 602 602 SO4 SO4 . S 5 GOL B 1 701 701 GOL GOL . T 2 V11 C 1 301 301 V11 V11 . U 3 CL C 1 501 501 CL CL . V 3 CL C 1 502 502 CL CL . W 4 SO4 C 1 601 601 SO4 SO4 . X 4 SO4 C 1 602 602 SO4 SO4 . Y 5 GOL C 1 701 701 GOL GOL . Z 5 GOL C 1 702 702 GOL GOL . AA 2 V11 D 1 301 301 V11 V11 . BA 3 CL D 1 501 501 CL CL . CA 3 CL D 1 502 502 CL CL . DA 3 CL D 1 503 503 CL CL . EA 4 SO4 D 1 601 601 SO4 SO4 . FA 4 SO4 D 1 602 602 SO4 SO4 . GA 4 SO4 D 1 603 603 SO4 SO4 . HA 5 GOL D 1 701 701 GOL GOL . IA 5 GOL D 1 702 702 GOL GOL . JA 5 GOL D 1 703 703 GOL GOL . KA 2 V11 E 1 301 301 V11 V11 . LA 3 CL E 1 501 501 CL CL . MA 3 CL E 1 502 502 CL CL . NA 4 SO4 E 1 601 601 SO4 SO4 . OA 4 SO4 E 1 602 602 SO4 SO4 . PA 4 SO4 E 1 603 603 SO4 SO4 . QA 4 SO4 E 1 604 604 SO4 SO4 . RA 4 SO4 E 1 605 605 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . Q 4 97.302 34.214 -52.403 1 131.05 ? S SO4 601 B 1 HETATM 2 O O1 SO4 . . . Q 4 98.32 34.051 -53.459 1 135.6 ? O1 SO4 601 B 1 HETATM 3 O O2 SO4 . . . Q 4 96.018 34.466 -53.011 1 136.11 ? O2 SO4 601 B 1 HETATM 4 O O3 SO4 . . . Q 4 97.212 32.953 -51.616 1 136.87 ? O3 SO4 601 B 1 HETATM 5 O O4 SO4 . . . Q 4 97.639 35.371 -51.542 1 135.64 ? O4 SO4 601 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #