data_2Y57 # _model_server_result.job_id 6NFyZUgHtnAJv1R7Zu6PjQ _model_server_result.datetime_utc '2024-10-19 20:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 2Y57 # _exptl.entry_id 2Y57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R,5S)-8-PHENETHYL-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y57 _cell.length_a 210.74 _cell.length_b 210.74 _cell.length_c 210.74 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 Q N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C22 H25 N O2' _chem_comp.formula_weight 335.439 _chem_comp.id V37 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R,5S)-8-PHENETHYL-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C10 V37 sing 360 n n N C11 V37 sing 361 n n N C15 V37 sing 362 n n C1 O1 V37 sing 363 n n C1 C2 V37 sing 364 n n C1 O2 V37 doub 365 n n O1 C8 V37 sing 366 n n C2 C3 V37 doub 367 n y C2 C7 V37 sing 368 n y C3 C4 V37 sing 369 n y C4 C5 V37 doub 370 n y C5 C6 V37 sing 371 n y C6 C7 V37 doub 372 n y C8 C9 V37 sing 373 n n C8 C12 V37 sing 374 n n C9 C10 V37 sing 375 n n C10 C14 V37 sing 376 n n C11 C12 V37 sing 377 n n C11 C13 V37 sing 378 n n C13 C14 V37 sing 379 n n C15 C16 V37 sing 380 n n C16 C17 V37 sing 381 n n C17 C18 V37 doub 382 n y C17 C22 V37 sing 383 n y C18 C19 V37 sing 384 n y C19 C20 V37 doub 385 n y C20 C21 V37 sing 386 n y C21 C22 V37 doub 387 n y C7 H7 V37 sing 388 n n C3 H3 V37 sing 389 n n C6 H6 V37 sing 390 n n C5 H5 V37 sing 391 n n C4 H4 V37 sing 392 n n C8 H8 V37 sing 393 n n C12 H121 V37 sing 394 n n C12 H122 V37 sing 395 n n C9 H91C V37 sing 396 n n C9 H92C V37 sing 397 n n C11 H11 V37 sing 398 n n C13 H131 V37 sing 399 n n C13 H132 V37 sing 400 n n C14 H141 V37 sing 401 n n C14 H142 V37 sing 402 n n C10 H10 V37 sing 403 n n C15 H151 V37 sing 404 n n C15 H152 V37 sing 405 n n C16 H161 V37 sing 406 n n C16 H162 V37 sing 407 n n C22 H22 V37 sing 408 n n C18 H18 V37 sing 409 n n C21 H21 V37 sing 410 n n C20 H20 V37 sing 411 n n C19 H19 V37 sing 412 n n # _atom_sites.entry_id 2Y57 _atom_sites.fract_transf_matrix[1][1] 0.004745 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 V37 A 1 301 301 V37 V37 . G 3 CL A 1 501 501 CL CL . H 4 SO4 A 1 601 601 SO4 SO4 . I 4 SO4 A 1 602 602 SO4 SO4 . J 2 V37 B 1 301 301 V37 V37 . K 3 CL B 1 501 501 CL CL . L 4 SO4 B 1 601 601 SO4 SO4 . M 4 SO4 B 1 602 602 SO4 SO4 . N 2 V37 C 1 301 301 V37 V37 . O 3 CL C 1 501 501 CL CL . P 4 SO4 C 1 601 601 SO4 SO4 . Q 2 V37 D 1 301 301 V37 V37 . R 3 CL D 1 501 501 CL CL . S 4 SO4 D 1 601 601 SO4 SO4 . T 2 V37 E 1 301 301 V37 V37 . U 3 CL E 1 501 501 CL CL . V 4 SO4 E 1 601 601 SO4 SO4 . W 4 SO4 E 1 602 602 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 V37 . . . J 2 -32.034 -55.007 29.503 1 67.88 ? O2 V37 301 B 1 HETATM 2 C C1 V37 . . . J 2 -32.343 -54.868 30.689 1 68.61 ? C1 V37 301 B 1 HETATM 3 C C2 V37 . . . J 2 -32.428 -53.546 31.417 1 69.6 ? C2 V37 301 B 1 HETATM 4 C C7 V37 . . . J 2 -32.976 -53.518 32.703 1 66.97 ? C7 V37 301 B 1 HETATM 5 C C6 V37 . . . J 2 -33.088 -52.326 33.426 1 66.73 ? C6 V37 301 B 1 HETATM 6 C C5 V37 . . . J 2 -32.64 -51.131 32.881 1 68.23 ? C5 V37 301 B 1 HETATM 7 C C4 V37 . . . J 2 -32.075 -51.16 31.6 1 72.12 ? C4 V37 301 B 1 HETATM 8 C C3 V37 . . . J 2 -31.977 -52.351 30.857 1 72.21 ? C3 V37 301 B 1 HETATM 9 O O1 V37 . . . J 2 -32.673 -56.013 31.503 1 66.67 ? O1 V37 301 B 1 HETATM 10 C C8 V37 . . . J 2 -32.312 -57.286 31.006 1 65.22 ? C8 V37 301 B 1 HETATM 11 C C12 V37 . . . J 2 -31.962 -58.122 32.25 1 64.2 ? C12 V37 301 B 1 HETATM 12 C C11 V37 . . . J 2 -33.159 -58.76 32.952 1 62.56 ? C11 V37 301 B 1 HETATM 13 C C13 V37 . . . J 2 -34.091 -57.648 33.423 1 59.56 ? C13 V37 301 B 1 HETATM 14 C C14 V37 . . . J 2 -35 -57.424 32.221 1 62.78 ? C14 V37 301 B 1 HETATM 15 C C10 V37 . . . J 2 -34.568 -58.433 31.149 1 65.02 ? C10 V37 301 B 1 HETATM 16 C C9 V37 . . . J 2 -33.508 -57.823 30.224 1 65.42 ? C9 V37 301 B 1 HETATM 17 N N V37 . . . J 2 -33.877 -59.498 31.889 1 63.5 ? N V37 301 B 1 HETATM 18 C C15 V37 . . . J 2 -34.869 -60.417 32.446 1 60.78 ? C15 V37 301 B 1 HETATM 19 C C16 V37 . . . J 2 -35.379 -61.305 31.335 1 61.23 ? C16 V37 301 B 1 HETATM 20 C C17 V37 . . . J 2 -35.909 -62.507 32.058 1 64.88 ? C17 V37 301 B 1 HETATM 21 C C22 V37 . . . J 2 -37.273 -62.746 32.125 1 66.55 ? C22 V37 301 B 1 HETATM 22 C C21 V37 . . . J 2 -37.762 -63.856 32.817 1 67.37 ? C21 V37 301 B 1 HETATM 23 C C20 V37 . . . J 2 -36.909 -64.752 33.455 1 67.32 ? C20 V37 301 B 1 HETATM 24 C C19 V37 . . . J 2 -35.545 -64.507 33.381 1 69.25 ? C19 V37 301 B 1 HETATM 25 C C18 V37 . . . J 2 -35.044 -63.38 32.705 1 68.15 ? C18 V37 301 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #