data_2Y57
#
_model_server_result.job_id            2Lk3goT5Mk1Li230qT7jWg 
_model_server_result.datetime_utc      '2024-10-19 20:17:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":301}' 
#
_entry.id    2Y57 
#
_exptl.entry_id    2Y57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1R,5S)-8-PHENETHYL-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Y57 
_cell.length_a            210.74 
_cell.length_b            210.74 
_cell.length_c            210.74 
_cell.Z_PDB               120 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 Q N N 
? 2 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
#
_chem_comp.formula           'C22 H25 N O2' 
_chem_comp.formula_weight    335.439 
_chem_comp.id                V37 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1R,5S)-8-PHENETHYL-8-AZABICYCLO[3.2.1]OCTAN-3-YL] BENZOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C10 V37 sing 360 n n 
N C11 V37 sing 361 n n 
N C15 V37 sing 362 n n 
C1 O1 V37 sing 363 n n 
C1 C2 V37 sing 364 n n 
C1 O2 V37 doub 365 n n 
O1 C8 V37 sing 366 n n 
C2 C3 V37 doub 367 n y 
C2 C7 V37 sing 368 n y 
C3 C4 V37 sing 369 n y 
C4 C5 V37 doub 370 n y 
C5 C6 V37 sing 371 n y 
C6 C7 V37 doub 372 n y 
C8 C9 V37 sing 373 n n 
C8 C12 V37 sing 374 n n 
C9 C10 V37 sing 375 n n 
C10 C14 V37 sing 376 n n 
C11 C12 V37 sing 377 n n 
C11 C13 V37 sing 378 n n 
C13 C14 V37 sing 379 n n 
C15 C16 V37 sing 380 n n 
C16 C17 V37 sing 381 n n 
C17 C18 V37 doub 382 n y 
C17 C22 V37 sing 383 n y 
C18 C19 V37 sing 384 n y 
C19 C20 V37 doub 385 n y 
C20 C21 V37 sing 386 n y 
C21 C22 V37 doub 387 n y 
C7 H7 V37 sing 388 n n 
C3 H3 V37 sing 389 n n 
C6 H6 V37 sing 390 n n 
C5 H5 V37 sing 391 n n 
C4 H4 V37 sing 392 n n 
C8 H8 V37 sing 393 n n 
C12 H121 V37 sing 394 n n 
C12 H122 V37 sing 395 n n 
C9 H91C V37 sing 396 n n 
C9 H92C V37 sing 397 n n 
C11 H11 V37 sing 398 n n 
C13 H131 V37 sing 399 n n 
C13 H132 V37 sing 400 n n 
C14 H141 V37 sing 401 n n 
C14 H142 V37 sing 402 n n 
C10 H10 V37 sing 403 n n 
C15 H151 V37 sing 404 n n 
C15 H152 V37 sing 405 n n 
C16 H161 V37 sing 406 n n 
C16 H162 V37 sing 407 n n 
C22 H22 V37 sing 408 n n 
C18 H18 V37 sing 409 n n 
C21 H21 V37 sing 410 n n 
C20 H20 V37 sing 411 n n 
C19 H19 V37 sing 412 n n 
#
_atom_sites.entry_id                     2Y57 
_atom_sites.fract_transf_matrix[1][1]    0.004745 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004745 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 V37 A 1 301 301 V37 V37 . 
G 3 CL A 1 501 501 CL CL . 
H 4 SO4 A 1 601 601 SO4 SO4 . 
I 4 SO4 A 1 602 602 SO4 SO4 . 
J 2 V37 B 1 301 301 V37 V37 . 
K 3 CL B 1 501 501 CL CL . 
L 4 SO4 B 1 601 601 SO4 SO4 . 
M 4 SO4 B 1 602 602 SO4 SO4 . 
N 2 V37 C 1 301 301 V37 V37 . 
O 3 CL C 1 501 501 CL CL . 
P 4 SO4 C 1 601 601 SO4 SO4 . 
Q 2 V37 D 1 301 301 V37 V37 . 
R 3 CL D 1 501 501 CL CL . 
S 4 SO4 D 1 601 601 SO4 SO4 . 
T 2 V37 E 1 301 301 V37 V37 . 
U 3 CL E 1 501 501 CL CL . 
V 4 SO4 E 1 601 601 SO4 SO4 . 
W 4 SO4 E 1 602 602 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 V37 . . . N 2 -6.645 -44.601 45.794 1 69.95 ? O2 V37 301 C 1 
HETATM 2 C C1 V37 . . . N 2 -6.826 -45.149 46.856 1 68.21 ? C1 V37 301 C 1 
HETATM 3 C C2 V37 . . . N 2 -5.797 -45.121 47.931 1 69.64 ? C2 V37 301 C 1 
HETATM 4 C C7 V37 . . . N 2 -6.132 -45.581 49.201 1 67.54 ? C7 V37 301 C 1 
HETATM 5 C C6 V37 . . . N 2 -5.153 -45.597 50.193 1 67.93 ? C6 V37 301 C 1 
HETATM 6 C C5 V37 . . . N 2 -3.849 -45.175 49.929 1 69.01 ? C5 V37 301 C 1 
HETATM 7 C C4 V37 . . . N 2 -3.516 -44.754 48.643 1 71.85 ? C4 V37 301 C 1 
HETATM 8 C C3 V37 . . . N 2 -4.485 -44.733 47.636 1 71.93 ? C3 V37 301 C 1 
HETATM 9 O O1 V37 . . . N 2 -8.015 -45.921 47.076 1 67.06 ? O1 V37 301 C 1 
HETATM 10 C C8 V37 . . . N 2 -8.831 -46.106 45.925 1 63.24 ? C8 V37 301 C 1 
HETATM 11 C C12 V37 . . . N 2 -9.75 -47.296 46.256 1 55.73 ? C12 V37 301 C 1 
HETATM 12 C C11 V37 . . . N 2 -10.957 -46.854 47.077 1 55.63 ? C11 V37 301 C 1 
HETATM 13 C C13 V37 . . . N 2 -10.513 -46.123 48.356 1 57.12 ? C13 V37 301 C 1 
HETATM 14 C C14 V37 . . . N 2 -10.363 -44.639 47.99 1 58.56 ? C14 V37 301 C 1 
HETATM 15 C C10 V37 . . . N 2 -10.794 -44.578 46.524 1 60.84 ? C10 V37 301 C 1 
HETATM 16 C C9 V37 . . . N 2 -9.555 -44.77 45.654 1 63.78 ? C9 V37 301 C 1 
HETATM 17 N N V37 . . . N 2 -11.613 -45.798 46.276 1 58.84 ? N V37 301 C 1 
HETATM 18 C C15 V37 . . . N 2 -13.014 -45.613 46.703 1 57.21 ? C15 V37 301 C 1 
HETATM 19 C C16 V37 . . . N 2 -13.915 -45.634 45.481 1 56.59 ? C16 V37 301 C 1 
HETATM 20 C C17 V37 . . . N 2 -15.317 -45.866 45.967 1 57.72 ? C17 V37 301 C 1 
HETATM 21 C C22 V37 . . . N 2 -15.979 -44.88 46.687 1 60.63 ? C22 V37 301 C 1 
HETATM 22 C C21 V37 . . . N 2 -17.291 -45.082 47.135 1 60.98 ? C21 V37 301 C 1 
HETATM 23 C C20 V37 . . . N 2 -17.923 -46.301 46.892 1 60.38 ? C20 V37 301 C 1 
HETATM 24 C C19 V37 . . . N 2 -17.262 -47.293 46.168 1 59.74 ? C19 V37 301 C 1 
HETATM 25 C C18 V37 . . . N 2 -15.961 -47.068 45.707 1 59.46 ? C18 V37 301 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#