data_2Y5B
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_model_server_result.job_id            tJt2dz0dGdnws7E-Y6EuhA 
_model_server_result.datetime_utc      '2025-04-02 10:58:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y5b 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1562}' 
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_entry.id    2Y5B 
#
_exptl.entry_id    2Y5B 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          99.82 
_cell.angle_gamma         90 
_cell.entry_id            2Y5B 
_cell.length_a            57.87 
_cell.length_b            102.2 
_cell.length_c            86.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2Y5B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,S,T 1 1 
C,D,N,O,P,Q,R,U,V 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
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loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 26 A CYS 221 1_555 B C GLZ 152 B GLZ 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? 
covale ? covale2 B C GLY 151 B GLY 151 1_555 B N GLZ 152 B GLZ 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 C SG CYS 26 E CYS 221 1_555 D C GLZ 152 F GLZ 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? 
covale ? covale4 D C GLY 151 F GLY 151 1_555 D N GLZ 152 F GLZ 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A SG CYS 189 A CYS 384 1_555 E ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc2 A SG CYS 192 A CYS 387 1_555 E ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc3 A SG CYS 242 A CYS 437 1_555 E ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc4 A SG CYS 245 A CYS 440 1_555 E ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc5 C SG CYS 189 E CYS 384 1_555 N ZN ZN . E ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc6 C SG CYS 192 E CYS 387 1_555 N ZN ZN . E ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc7 C SG CYS 242 E CYS 437 1_555 N ZN ZN . E ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc8 C SG CYS 245 E CYS 440 1_555 N ZN ZN . E ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 298 n n 
S O2 SO4 doub 299 n n 
S O3 SO4 sing 300 n n 
S O4 SO4 sing 301 n n 
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_atom_sites.entry_id                     2Y5B 
_atom_sites.fract_transf_matrix[1][1]    0.01728 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002991 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011692 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
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loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 1000 1000 ZN ZN . 
F 4 SO4 A 1 1559 1559 SO4 SO4 . 
G 4 SO4 A 1 1560 1560 SO4 SO4 . 
H 4 SO4 A 1 1561 1561 SO4 SO4 . 
I 4 SO4 A 1 1562 1562 SO4 SO4 . 
J 4 SO4 A 1 1563 1563 SO4 SO4 . 
K 4 SO4 A 1 1564 1564 SO4 SO4 . 
L 4 SO4 A 1 1565 1565 SO4 SO4 . 
M 4 SO4 B 1 1152 1152 SO4 SO4 . 
N 3 ZN E 1 1000 1000 ZN ZN . 
O 4 SO4 E 1 1560 1560 SO4 SO4 . 
P 4 SO4 E 1 1561 1561 SO4 SO4 . 
Q 4 SO4 E 1 1562 1562 SO4 SO4 . 
R 4 SO4 F 1 1152 1152 SO4 SO4 . 
S 5 HOH A 1 2001 2001 HOH HOH . 
S 5 HOH A 2 2002 2002 HOH HOH . 
S 5 HOH A 3 2003 2003 HOH HOH . 
S 5 HOH A 4 2004 2004 HOH HOH . 
S 5 HOH A 5 2005 2005 HOH HOH . 
S 5 HOH A 6 2006 2006 HOH HOH . 
T 5 HOH B 1 2001 2001 HOH HOH . 
T 5 HOH B 2 2002 2002 HOH HOH . 
T 5 HOH B 3 2003 2003 HOH HOH . 
T 5 HOH B 4 2004 2004 HOH HOH . 
U 5 HOH E 1 2001 2001 HOH HOH . 
U 5 HOH E 2 2002 2002 HOH HOH . 
U 5 HOH E 3 2003 2003 HOH HOH . 
U 5 HOH E 4 2004 2004 HOH HOH . 
U 5 HOH E 5 2005 2005 HOH HOH . 
U 5 HOH E 6 2006 2006 HOH HOH . 
U 5 HOH E 7 2007 2007 HOH HOH . 
U 5 HOH E 8 2008 2008 HOH HOH . 
U 5 HOH E 9 2009 2009 HOH HOH . 
U 5 HOH E 10 2010 2010 HOH HOH . 
U 5 HOH E 11 2011 2011 HOH HOH . 
U 5 HOH E 12 2012 2012 HOH HOH . 
V 5 HOH F 1 2001 2001 HOH HOH . 
V 5 HOH F 2 2002 2002 HOH HOH . 
V 5 HOH F 3 2003 2003 HOH HOH . 
V 5 HOH F 4 2004 2004 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . Q 4 -17.501 7.321 -45.787 1 53.73 ? S SO4 1562 E 1 
HETATM 2 O O1 SO4 . . . Q 4 -18.811 7.964 -46.036 1 52.99 ? O1 SO4 1562 E 1 
HETATM 3 O O2 SO4 . . . Q 4 -16.463 7.958 -46.627 1 54.41 ? O2 SO4 1562 E 1 
HETATM 4 O O3 SO4 . . . Q 4 -17.572 5.884 -46.143 1 53.48 ? O3 SO4 1562 E 1 
HETATM 5 O O4 SO4 . . . Q 4 -17.149 7.484 -44.358 1 51.17 ? O4 SO4 1562 E 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
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