data_2Y6I
#
_model_server_result.job_id            WZX547A8f-kcvOqRrFNMGw 
_model_server_result.datetime_utc      '2024-11-25 18:06:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1796}' 
#
_entry.id    2Y6I 
#
_exptl.entry_id    2Y6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Y6I 
_cell.length_a            58.12 
_cell.length_b            108.84 
_cell.length_c            181.03 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B P IPI 1 B IPI 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? 
metalc ? metalc1 A NE2 HIS 428 A HIS 523 1_555 C ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 A NE2 HIS 432 A HIS 527 1_555 C ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 A OE1 GLU 460 A GLU 555 1_555 C ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 C ZN ZN . A ZN 1791 1_555 K O HOH . A HOH 2042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc5 C ZN ZN . A ZN 1791 1_555 B O2 IPI 1 B IPI 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 425 n n 
C C2 TRS sing 426 n n 
C C3 TRS sing 427 n n 
C N TRS sing 428 n n 
C1 O1 TRS sing 429 n n 
C1 H11 TRS sing 430 n n 
C1 H12 TRS sing 431 n n 
C2 O2 TRS sing 432 n n 
C2 H21 TRS sing 433 n n 
C2 H22 TRS sing 434 n n 
C3 O3 TRS sing 435 n n 
C3 H31 TRS sing 436 n n 
C3 H32 TRS sing 437 n n 
N HN1 TRS sing 438 n n 
N HN2 TRS sing 439 n n 
N HN3 TRS sing 440 n n 
O1 HO1 TRS sing 441 n n 
O2 HO2 TRS sing 442 n n 
O3 HO3 TRS sing 443 n n 
#
_atom_sites.entry_id                     2Y6I 
_atom_sites.fract_transf_matrix[1][1]    0.017206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009188 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 1791 1791 ZN ZN . 
D 4 FLC A 1 1793 1793 FLC FLC . 
E 5 TRS A 1 1794 1794 TRS TRS . 
F 5 TRS A 1 1795 1795 TRS TRS . 
G 5 TRS A 1 1796 1796 TRS TRS . 
H 6 PEG A 1 1797 1797 PEG PEG . 
I 6 PEG A 1 1798 1798 PEG PEG . 
J 7 1PE A 1 1799 1799 1PE 1PE . 
K 8 HOH A 1 2001 2001 HOH HOH . 
K 8 HOH A 2 2002 2002 HOH HOH . 
K 8 HOH A 3 2003 2003 HOH HOH . 
K 8 HOH A 4 2004 2004 HOH HOH . 
K 8 HOH A 5 2005 2005 HOH HOH . 
K 8 HOH A 6 2006 2006 HOH HOH . 
K 8 HOH A 7 2007 2007 HOH HOH . 
K 8 HOH A 8 2008 2008 HOH HOH . 
K 8 HOH A 9 2009 2009 HOH HOH . 
K 8 HOH A 10 2010 2010 HOH HOH . 
K 8 HOH A 11 2011 2011 HOH HOH . 
K 8 HOH A 12 2012 2012 HOH HOH . 
K 8 HOH A 13 2013 2013 HOH HOH . 
K 8 HOH A 14 2014 2014 HOH HOH . 
K 8 HOH A 15 2015 2015 HOH HOH . 
K 8 HOH A 16 2016 2016 HOH HOH . 
K 8 HOH A 17 2017 2017 HOH HOH . 
K 8 HOH A 18 2018 2018 HOH HOH . 
K 8 HOH A 19 2019 2019 HOH HOH . 
K 8 HOH A 20 2020 2020 HOH HOH . 
K 8 HOH A 21 2021 2021 HOH HOH . 
K 8 HOH A 22 2022 2022 HOH HOH . 
K 8 HOH A 23 2023 2023 HOH HOH . 
K 8 HOH A 24 2024 2024 HOH HOH . 
K 8 HOH A 25 2025 2025 HOH HOH . 
K 8 HOH A 26 2026 2026 HOH HOH . 
K 8 HOH A 27 2027 2027 HOH HOH . 
K 8 HOH A 28 2028 2028 HOH HOH . 
K 8 HOH A 29 2029 2029 HOH HOH . 
K 8 HOH A 30 2030 2030 HOH HOH . 
K 8 HOH A 31 2031 2031 HOH HOH . 
K 8 HOH A 32 2032 2032 HOH HOH . 
K 8 HOH A 33 2033 2033 HOH HOH . 
K 8 HOH A 34 2034 2034 HOH HOH . 
K 8 HOH A 35 2035 2035 HOH HOH . 
K 8 HOH A 36 2036 2036 HOH HOH . 
K 8 HOH A 37 2037 2037 HOH HOH . 
K 8 HOH A 38 2038 2038 HOH HOH . 
K 8 HOH A 39 2039 2039 HOH HOH . 
K 8 HOH A 40 2040 2040 HOH HOH . 
K 8 HOH A 41 2041 2041 HOH HOH . 
K 8 HOH A 42 2042 2042 HOH HOH . 
K 8 HOH A 43 2043 2043 HOH HOH . 
K 8 HOH A 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . G 5 34.459 19.825 39.404 1 79.94 ? C TRS 1796 A 1 
HETATM 2 C C1 TRS . . . G 5 35.328 20.367 38.263 1 79.91 ? C1 TRS 1796 A 1 
HETATM 3 C C2 TRS . . . G 5 33.097 20.524 39.339 1 79.75 ? C2 TRS 1796 A 1 
HETATM 4 C C3 TRS . . . G 5 35.162 20.116 40.737 1 79.95 ? C3 TRS 1796 A 1 
HETATM 5 N N TRS . . . G 5 34.284 18.351 39.224 1 79.76 ? N TRS 1796 A 1 
HETATM 6 O O1 TRS . . . G 5 36.4 19.465 37.948 1 79.73 ? O1 TRS 1796 A 1 
HETATM 7 O O2 TRS . . . G 5 32.085 19.751 40 1 79.29 ? O2 TRS 1796 A 1 
HETATM 8 O O3 TRS . . . G 5 34.41 19.644 41.865 1 79.78 ? O3 TRS 1796 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#