data_2Y6I
#
_model_server_result.job_id            oKkd6hlrWcS9Y2rMCYkAzw 
_model_server_result.datetime_utc      '2024-11-22 11:54:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1799}' 
#
_entry.id    2Y6I 
#
_exptl.entry_id    2Y6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.278 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Y6I 
_cell.length_a            58.12 
_cell.length_b            108.84 
_cell.length_c            181.03 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B P IPI 1 B IPI 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? 
metalc ? metalc1 A NE2 HIS 428 A HIS 523 1_555 C ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 A NE2 HIS 432 A HIS 527 1_555 C ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 A OE1 GLU 460 A GLU 555 1_555 C ZN ZN . A ZN 1791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 C ZN ZN . A ZN 1791 1_555 K O HOH . A HOH 2042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc5 C ZN ZN . A ZN 1791 1_555 B O2 IPI 1 B IPI 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
#
_chem_comp.formula           'C10 H22 O6' 
_chem_comp.formula_weight    238.278 
_chem_comp.id                1PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PEG400 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH2 C12 1PE sing 1 n n 
OH2 HO2 1PE sing 2 n n 
C12 C22 1PE sing 3 n n 
C12 H121 1PE sing 4 n n 
C12 H122 1PE sing 5 n n 
C22 OH3 1PE sing 6 n n 
C22 H221 1PE sing 7 n n 
C22 H222 1PE sing 8 n n 
OH3 C23 1PE sing 9 n n 
C13 C23 1PE sing 10 n n 
C13 OH4 1PE sing 11 n n 
C13 H131 1PE sing 12 n n 
C13 H132 1PE sing 13 n n 
C23 H231 1PE sing 14 n n 
C23 H232 1PE sing 15 n n 
OH4 C24 1PE sing 16 n n 
C14 C24 1PE sing 17 n n 
C14 OH5 1PE sing 18 n n 
C14 H141 1PE sing 19 n n 
C14 H142 1PE sing 20 n n 
C24 H241 1PE sing 21 n n 
C24 H242 1PE sing 22 n n 
OH5 C25 1PE sing 23 n n 
C15 C25 1PE sing 24 n n 
C15 OH6 1PE sing 25 n n 
C15 H151 1PE sing 26 n n 
C15 H152 1PE sing 27 n n 
C25 H251 1PE sing 28 n n 
C25 H252 1PE sing 29 n n 
OH6 C26 1PE sing 30 n n 
C16 C26 1PE sing 31 n n 
C16 OH7 1PE sing 32 n n 
C16 H161 1PE sing 33 n n 
C16 H162 1PE sing 34 n n 
C26 H261 1PE sing 35 n n 
C26 H262 1PE sing 36 n n 
OH7 HO7 1PE sing 37 n n 
#
_atom_sites.entry_id                     2Y6I 
_atom_sites.fract_transf_matrix[1][1]    0.017206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009188 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 1791 1791 ZN ZN . 
D 4 FLC A 1 1793 1793 FLC FLC . 
E 5 TRS A 1 1794 1794 TRS TRS . 
F 5 TRS A 1 1795 1795 TRS TRS . 
G 5 TRS A 1 1796 1796 TRS TRS . 
H 6 PEG A 1 1797 1797 PEG PEG . 
I 6 PEG A 1 1798 1798 PEG PEG . 
J 7 1PE A 1 1799 1799 1PE 1PE . 
K 8 HOH A 1 2001 2001 HOH HOH . 
K 8 HOH A 2 2002 2002 HOH HOH . 
K 8 HOH A 3 2003 2003 HOH HOH . 
K 8 HOH A 4 2004 2004 HOH HOH . 
K 8 HOH A 5 2005 2005 HOH HOH . 
K 8 HOH A 6 2006 2006 HOH HOH . 
K 8 HOH A 7 2007 2007 HOH HOH . 
K 8 HOH A 8 2008 2008 HOH HOH . 
K 8 HOH A 9 2009 2009 HOH HOH . 
K 8 HOH A 10 2010 2010 HOH HOH . 
K 8 HOH A 11 2011 2011 HOH HOH . 
K 8 HOH A 12 2012 2012 HOH HOH . 
K 8 HOH A 13 2013 2013 HOH HOH . 
K 8 HOH A 14 2014 2014 HOH HOH . 
K 8 HOH A 15 2015 2015 HOH HOH . 
K 8 HOH A 16 2016 2016 HOH HOH . 
K 8 HOH A 17 2017 2017 HOH HOH . 
K 8 HOH A 18 2018 2018 HOH HOH . 
K 8 HOH A 19 2019 2019 HOH HOH . 
K 8 HOH A 20 2020 2020 HOH HOH . 
K 8 HOH A 21 2021 2021 HOH HOH . 
K 8 HOH A 22 2022 2022 HOH HOH . 
K 8 HOH A 23 2023 2023 HOH HOH . 
K 8 HOH A 24 2024 2024 HOH HOH . 
K 8 HOH A 25 2025 2025 HOH HOH . 
K 8 HOH A 26 2026 2026 HOH HOH . 
K 8 HOH A 27 2027 2027 HOH HOH . 
K 8 HOH A 28 2028 2028 HOH HOH . 
K 8 HOH A 29 2029 2029 HOH HOH . 
K 8 HOH A 30 2030 2030 HOH HOH . 
K 8 HOH A 31 2031 2031 HOH HOH . 
K 8 HOH A 32 2032 2032 HOH HOH . 
K 8 HOH A 33 2033 2033 HOH HOH . 
K 8 HOH A 34 2034 2034 HOH HOH . 
K 8 HOH A 35 2035 2035 HOH HOH . 
K 8 HOH A 36 2036 2036 HOH HOH . 
K 8 HOH A 37 2037 2037 HOH HOH . 
K 8 HOH A 38 2038 2038 HOH HOH . 
K 8 HOH A 39 2039 2039 HOH HOH . 
K 8 HOH A 40 2040 2040 HOH HOH . 
K 8 HOH A 41 2041 2041 HOH HOH . 
K 8 HOH A 42 2042 2042 HOH HOH . 
K 8 HOH A 43 2043 2043 HOH HOH . 
K 8 HOH A 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH2 1PE . . . J 7 10.495 20.682 19.287 1 79.71 ? OH2 1PE 1799 A 1 
HETATM 2 C C12 1PE . . . J 7 10.474 21.23 20.612 1 79.8 ? C12 1PE 1799 A 1 
HETATM 3 C C22 1PE . . . J 7 10.934 22.684 20.588 1 80.19 ? C22 1PE 1799 A 1 
HETATM 4 O OH3 1PE . . . J 7 11.893 22.849 19.545 1 81.01 ? OH3 1PE 1799 A 1 
HETATM 5 C C13 1PE . . . J 7 13.548 24.176 18.417 1 81.5 ? C13 1PE 1799 A 1 
HETATM 6 C C23 1PE . . . J 7 12.655 24.051 19.649 1 81.14 ? C23 1PE 1799 A 1 
HETATM 7 O OH4 1PE . . . J 7 14.836 24.647 18.805 1 81.75 ? OH4 1PE 1799 A 1 
HETATM 8 C C14 1PE . . . J 7 16.622 23.23 19.626 1 81.59 ? C14 1PE 1799 A 1 
HETATM 9 C C24 1PE . . . J 7 15.892 23.774 18.396 1 81.81 ? C24 1PE 1799 A 1 
HETATM 10 O OH5 1PE . . . J 7 18.03 23.465 19.522 1 81.03 ? OH5 1PE 1799 A 1 
HETATM 11 C C15 1PE . . . J 7 19.684 23.116 21.264 1 80.44 ? C15 1PE 1799 A 1 
HETATM 12 C C25 1PE . . . J 7 18.8 22.47 20.2 1 80.76 ? C25 1PE 1799 A 1 
HETATM 13 O OH6 1PE . . . J 7 21.059 22.906 20.946 1 80.28 ? OH6 1PE 1799 A 1 
HETATM 14 C C16 1PE . . . J 7 23.236 23.299 21.918 1 80.02 ? C16 1PE 1799 A 1 
HETATM 15 C C26 1PE . . . J 7 21.893 23.906 21.53 1 80.2 ? C26 1PE 1799 A 1 
HETATM 16 O OH7 1PE . . . J 7 24.257 24.289 21.754 1 79.88 ? OH7 1PE 1799 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#