data_2Y6R # _model_server_result.job_id uLLL1R-f8GURlghlDkjvlQ _model_server_result.datetime_utc '2024-11-07 21:35:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1384}' # _entry.id 2Y6R # _exptl.entry_id 2Y6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.99 _cell.angle_beta 90.27 _cell.angle_gamma 92.87 _cell.entry_id 2Y6R _cell.length_a 67.416 _cell.length_b 78.87 _cell.length_c 86.609 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,X 1 1 B,J,K,L,M,N,Y 2 1 C,O,P,Q,R,Z 3 1 D,S,T,U,V,W,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 O N N ? 2 S N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 142 n n PA O2A FAD sing 143 n n PA O5B FAD sing 144 n n PA O3P FAD sing 145 n n O2A HOA2 FAD sing 146 n n O5B C5B FAD sing 147 n n C5B C4B FAD sing 148 n n C5B H51A FAD sing 149 n n C5B H52A FAD sing 150 n n C4B O4B FAD sing 151 n n C4B C3B FAD sing 152 n n C4B H4B FAD sing 153 n n O4B C1B FAD sing 154 n n C3B O3B FAD sing 155 n n C3B C2B FAD sing 156 n n C3B H3B FAD sing 157 n n O3B HO3A FAD sing 158 n n C2B O2B FAD sing 159 n n C2B C1B FAD sing 160 n n C2B H2B FAD sing 161 n n O2B HO2A FAD sing 162 n n C1B N9A FAD sing 163 n n C1B H1B FAD sing 164 n n N9A C8A FAD sing 165 n y N9A C4A FAD sing 166 n y C8A N7A FAD doub 167 n y C8A H8A FAD sing 168 n n N7A C5A FAD sing 169 n y C5A C6A FAD sing 170 n y C5A C4A FAD doub 171 n y C6A N6A FAD sing 172 n n C6A N1A FAD doub 173 n y N6A H61A FAD sing 174 n n N6A H62A FAD sing 175 n n N1A C2A FAD sing 176 n y C2A N3A FAD doub 177 n y C2A H2A FAD sing 178 n n N3A C4A FAD sing 179 n y N1 C2 FAD sing 180 n n N1 C10 FAD doub 181 n n C2 O2 FAD doub 182 n n C2 N3 FAD sing 183 n n N3 C4 FAD sing 184 n n N3 HN3 FAD sing 185 n n C4 O4 FAD doub 186 n n C4 C4X FAD sing 187 n n C4X N5 FAD doub 188 n n C4X C10 FAD sing 189 n n N5 C5X FAD sing 190 n n C5X C6 FAD doub 191 n y C5X C9A FAD sing 192 n y C6 C7 FAD sing 193 n y C6 H6 FAD sing 194 n n C7 C7M FAD sing 195 n n C7 C8 FAD doub 196 n y C7M HM71 FAD sing 197 n n C7M HM72 FAD sing 198 n n C7M HM73 FAD sing 199 n n C8 C8M FAD sing 200 n n C8 C9 FAD sing 201 n y C8M HM81 FAD sing 202 n n C8M HM82 FAD sing 203 n n C8M HM83 FAD sing 204 n n C9 C9A FAD doub 205 n y C9 H9 FAD sing 206 n n C9A N10 FAD sing 207 n n N10 C10 FAD sing 208 n n N10 C1' FAD sing 209 n n C1' C2' FAD sing 210 n n C1' "H1'1" FAD sing 211 n n C1' "H1'2" FAD sing 212 n n C2' O2' FAD sing 213 n n C2' C3' FAD sing 214 n n C2' H2' FAD sing 215 n n O2' HO2' FAD sing 216 n n C3' O3' FAD sing 217 n n C3' C4' FAD sing 218 n n C3' H3' FAD sing 219 n n O3' HO3' FAD sing 220 n n C4' O4' FAD sing 221 n n C4' C5' FAD sing 222 n n C4' H4' FAD sing 223 n n O4' HO4' FAD sing 224 n n C5' O5' FAD sing 225 n n C5' "H5'1" FAD sing 226 n n C5' "H5'2" FAD sing 227 n n O5' P FAD sing 228 n n P O1P FAD doub 229 n n P O2P FAD sing 230 n n P O3P FAD sing 231 n n O2P HOP2 FAD sing 232 n n # _atom_sites.entry_id 2Y6R _atom_sites.fract_transf_matrix[1][1] 0.014833 _atom_sites.fract_transf_matrix[1][2] 0.000744 _atom_sites.fract_transf_matrix[1][3] 0.000361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012695 _atom_sites.fract_transf_matrix[2][3] 0.004881 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 1384 1384 FAD FAD . F 3 CTC A 1 1385 1385 CTC CTC . G 4 SO4 A 1 1386 1386 SO4 SO4 . H 4 SO4 A 1 1387 1387 SO4 SO4 . I 4 SO4 A 1 1388 1388 SO4 SO4 . J 2 FAD B 1 1384 1384 FAD FAD . K 3 CTC B 1 1385 1385 CTC CTC . L 4 SO4 B 1 1386 1386 SO4 SO4 . M 4 SO4 B 1 1387 1387 SO4 SO4 . N 4 SO4 B 1 1388 1388 SO4 SO4 . O 2 FAD C 1 1384 1384 FAD FAD . P 3 CTC C 1 1385 1385 CTC CTC . Q 4 SO4 C 1 1386 1386 SO4 SO4 . R 4 SO4 C 1 1387 1387 SO4 SO4 . S 2 FAD D 1 1384 1384 FAD FAD . T 3 CTC D 1 1385 1385 CTC CTC . U 4 SO4 D 1 1386 1386 SO4 SO4 . V 4 SO4 D 1 1387 1387 SO4 SO4 . W 4 SO4 D 1 1388 1388 SO4 SO4 . X 5 HOH A 1 2001 2001 HOH HOH . X 5 HOH A 2 2002 2002 HOH HOH . X 5 HOH A 3 2003 2003 HOH HOH . X 5 HOH A 4 2004 2004 HOH HOH . X 5 HOH A 5 2005 2005 HOH HOH . X 5 HOH A 6 2006 2006 HOH HOH . X 5 HOH A 7 2007 2007 HOH HOH . X 5 HOH A 8 2008 2008 HOH HOH . X 5 HOH A 9 2009 2009 HOH HOH . X 5 HOH A 10 2010 2010 HOH HOH . X 5 HOH A 11 2011 2011 HOH HOH . X 5 HOH A 12 2012 2012 HOH HOH . X 5 HOH A 13 2013 2013 HOH HOH . X 5 HOH A 14 2014 2014 HOH HOH . X 5 HOH A 15 2015 2015 HOH HOH . X 5 HOH A 16 2016 2016 HOH HOH . X 5 HOH A 17 2017 2017 HOH HOH . X 5 HOH A 18 2018 2018 HOH HOH . X 5 HOH A 19 2019 2019 HOH HOH . X 5 HOH A 20 2020 2020 HOH HOH . X 5 HOH A 21 2021 2021 HOH HOH . X 5 HOH A 22 2022 2022 HOH HOH . X 5 HOH A 23 2023 2023 HOH HOH . X 5 HOH A 24 2024 2024 HOH HOH . X 5 HOH A 25 2025 2025 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Y 5 HOH B 3 2003 2003 HOH HOH . Y 5 HOH B 4 2004 2004 HOH HOH . Y 5 HOH B 5 2005 2005 HOH HOH . Y 5 HOH B 6 2006 2006 HOH HOH . Y 5 HOH B 7 2007 2007 HOH HOH . Y 5 HOH B 8 2008 2008 HOH HOH . Y 5 HOH B 9 2009 2009 HOH HOH . Y 5 HOH B 10 2010 2010 HOH HOH . Y 5 HOH B 11 2011 2011 HOH HOH . Y 5 HOH B 12 2012 2012 HOH HOH . Y 5 HOH B 13 2013 2013 HOH HOH . Y 5 HOH B 14 2014 2014 HOH HOH . Y 5 HOH B 15 2015 2015 HOH HOH . Y 5 HOH B 16 2016 2016 HOH HOH . Y 5 HOH B 17 2017 2017 HOH HOH . Y 5 HOH B 18 2018 2018 HOH HOH . Y 5 HOH B 19 2019 2019 HOH HOH . Y 5 HOH B 20 2020 2020 HOH HOH . Y 5 HOH B 21 2021 2021 HOH HOH . Y 5 HOH B 22 2022 2022 HOH HOH . Y 5 HOH B 23 2023 2023 HOH HOH . Y 5 HOH B 24 2024 2024 HOH HOH . Y 5 HOH B 25 2025 2025 HOH HOH . Y 5 HOH B 26 2026 2026 HOH HOH . Y 5 HOH B 27 2027 2027 HOH HOH . Y 5 HOH B 28 2028 2028 HOH HOH . Y 5 HOH B 29 2029 2029 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . Z 5 HOH C 3 2003 2003 HOH HOH . Z 5 HOH C 4 2004 2004 HOH HOH . Z 5 HOH C 5 2005 2005 HOH HOH . Z 5 HOH C 6 2006 2006 HOH HOH . Z 5 HOH C 7 2007 2007 HOH HOH . Z 5 HOH C 8 2008 2008 HOH HOH . Z 5 HOH C 9 2009 2009 HOH HOH . Z 5 HOH C 10 2010 2010 HOH HOH . Z 5 HOH C 11 2011 2011 HOH HOH . Z 5 HOH C 12 2012 2012 HOH HOH . Z 5 HOH C 13 2013 2013 HOH HOH . Z 5 HOH C 14 2014 2014 HOH HOH . Z 5 HOH C 15 2015 2015 HOH HOH . Z 5 HOH C 16 2016 2016 HOH HOH . Z 5 HOH C 17 2017 2017 HOH HOH . Z 5 HOH C 18 2018 2018 HOH HOH . Z 5 HOH C 19 2019 2019 HOH HOH . Z 5 HOH C 20 2020 2020 HOH HOH . Z 5 HOH C 21 2021 2021 HOH HOH . Z 5 HOH C 22 2022 2022 HOH HOH . Z 5 HOH C 23 2023 2023 HOH HOH . AA 5 HOH D 1 2001 2001 HOH HOH . AA 5 HOH D 2 2002 2002 HOH HOH . AA 5 HOH D 3 2003 2003 HOH HOH . AA 5 HOH D 4 2004 2004 HOH HOH . AA 5 HOH D 5 2005 2005 HOH HOH . AA 5 HOH D 6 2006 2006 HOH HOH . AA 5 HOH D 7 2007 2007 HOH HOH . AA 5 HOH D 8 2008 2008 HOH HOH . AA 5 HOH D 9 2009 2009 HOH HOH . AA 5 HOH D 10 2010 2010 HOH HOH . AA 5 HOH D 11 2011 2011 HOH HOH . AA 5 HOH D 12 2012 2012 HOH HOH . AA 5 HOH D 13 2013 2013 HOH HOH . AA 5 HOH D 14 2014 2014 HOH HOH . AA 5 HOH D 15 2015 2015 HOH HOH . AA 5 HOH D 16 2016 2016 HOH HOH . AA 5 HOH D 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . O 2 -21.606 -18.928 50.522 1 50.15 ? PA FAD 1384 C 1 HETATM 2 O O1A FAD . . . O 2 -22.713 -18.08 51.106 1 52.06 ? O1A FAD 1384 C 1 HETATM 3 O O2A FAD . . . O 2 -21.899 -19.44 49.143 1 51.97 ? O2A FAD 1384 C 1 HETATM 4 O O5B FAD . . . O 2 -21.294 -20.124 51.56 1 48.95 ? O5B FAD 1384 C 1 HETATM 5 C C5B FAD . . . O 2 -20.017 -20.722 51.68 1 48.54 ? C5B FAD 1384 C 1 HETATM 6 C C4B FAD . . . O 2 -20.006 -22.145 52.256 1 46.55 ? C4B FAD 1384 C 1 HETATM 7 O O4B FAD . . . O 2 -19.465 -22.115 53.57 1 47.24 ? O4B FAD 1384 C 1 HETATM 8 C C3B FAD . . . O 2 -21.36 -22.835 52.329 1 45.36 ? C3B FAD 1384 C 1 HETATM 9 O O3B FAD . . . O 2 -21.341 -24.041 51.603 1 42.14 ? O3B FAD 1384 C 1 HETATM 10 C C2B FAD . . . O 2 -21.583 -23.108 53.809 1 46.65 ? C2B FAD 1384 C 1 HETATM 11 O O2B FAD . . . O 2 -22.154 -24.378 54.047 1 45.99 ? O2B FAD 1384 C 1 HETATM 12 C C1B FAD . . . O 2 -20.187 -23.006 54.391 1 47.15 ? C1B FAD 1384 C 1 HETATM 13 N N9A FAD . . . O 2 -20.235 -22.531 55.765 1 47.8 ? N9A FAD 1384 C 1 HETATM 14 C C8A FAD . . . O 2 -21.082 -21.623 56.302 1 48.29 ? C8A FAD 1384 C 1 HETATM 15 N N7A FAD . . . O 2 -20.769 -21.473 57.609 1 49.41 ? N7A FAD 1384 C 1 HETATM 16 C C5A FAD . . . O 2 -19.734 -22.271 57.897 1 50.4 ? C5A FAD 1384 C 1 HETATM 17 C C6A FAD . . . O 2 -19.061 -22.527 59.081 1 52.33 ? C6A FAD 1384 C 1 HETATM 18 N N6A FAD . . . O 2 -19.862 -22.678 60.129 1 53.94 ? N6A FAD 1384 C 1 HETATM 19 N N1A FAD . . . O 2 -17.997 -23.414 59.07 1 54.55 ? N1A FAD 1384 C 1 HETATM 20 C C2A FAD . . . O 2 -17.648 -24.083 57.902 1 55.42 ? C2A FAD 1384 C 1 HETATM 21 N N3A FAD . . . O 2 -18.359 -23.834 56.736 1 54.15 ? N3A FAD 1384 C 1 HETATM 22 C C4A FAD . . . O 2 -19.394 -22.948 56.743 1 50.53 ? C4A FAD 1384 C 1 HETATM 23 N N1 FAD . . . O 2 -25.005 -13.354 43.758 1 85.11 ? N1 FAD 1384 C 1 HETATM 24 C C2 FAD . . . O 2 -24.69 -13.249 42.425 1 86.3 ? C2 FAD 1384 C 1 HETATM 25 O O2 FAD . . . O 2 -23.533 -12.968 42.098 1 86.12 ? O2 FAD 1384 C 1 HETATM 26 N N3 FAD . . . O 2 -25.679 -13.462 41.484 1 86.76 ? N3 FAD 1384 C 1 HETATM 27 C C4 FAD . . . O 2 -26.966 -13.766 41.888 1 86.54 ? C4 FAD 1384 C 1 HETATM 28 O O4 FAD . . . O 2 -27.795 -13.935 41.002 1 88.18 ? O4 FAD 1384 C 1 HETATM 29 C C4X FAD . . . O 2 -27.29 -13.876 43.253 1 85.23 ? C4X FAD 1384 C 1 HETATM 30 N N5 FAD . . . O 2 -28.562 -14.187 43.733 1 85.68 ? N5 FAD 1384 C 1 HETATM 31 C C5X FAD . . . O 2 -28.821 -14.272 45.104 1 84.96 ? C5X FAD 1384 C 1 HETATM 32 C C6 FAD . . . O 2 -30.089 -14.582 45.607 1 85.64 ? C6 FAD 1384 C 1 HETATM 33 C C7 FAD . . . O 2 -30.339 -14.672 46.986 1 85.79 ? C7 FAD 1384 C 1 HETATM 34 C C7M FAD . . . O 2 -31.712 -14.996 47.505 1 86.55 ? C7M FAD 1384 C 1 HETATM 35 C C8 FAD . . . O 2 -29.312 -14.451 47.895 1 85.98 ? C8 FAD 1384 C 1 HETATM 36 C C8M FAD . . . O 2 -29.574 -14.541 49.379 1 86.04 ? C8M FAD 1384 C 1 HETATM 37 C C9 FAD . . . O 2 -28.04 -14.144 47.395 1 85.45 ? C9 FAD 1384 C 1 HETATM 38 C C9A FAD . . . O 2 -27.797 -14.053 46.013 1 84.15 ? C9A FAD 1384 C 1 HETATM 39 N N10 FAD . . . O 2 -26.541 -13.74 45.527 1 82.68 ? N10 FAD 1384 C 1 HETATM 40 C C10 FAD . . . O 2 -26.284 -13.664 44.175 1 83.75 ? C10 FAD 1384 C 1 HETATM 41 C C1' FAD . . . O 2 -25.389 -13.55 46.467 1 78.35 ? C1' FAD 1384 C 1 HETATM 42 C C2' FAD . . . O 2 -24.566 -14.841 46.235 1 73.16 ? C2' FAD 1384 C 1 HETATM 43 O O2' FAD . . . O 2 -25.367 -16.011 46.312 1 72.86 ? O2' FAD 1384 C 1 HETATM 44 C C3' FAD . . . O 2 -23.387 -14.994 47.177 1 69.04 ? C3' FAD 1384 C 1 HETATM 45 O O3' FAD . . . O 2 -22.405 -14.034 46.854 1 70.65 ? O3' FAD 1384 C 1 HETATM 46 C C4' FAD . . . O 2 -22.743 -16.377 47.133 1 64.18 ? C4' FAD 1384 C 1 HETATM 47 O O4' FAD . . . O 2 -23.707 -17.414 47.101 1 60.55 ? O4' FAD 1384 C 1 HETATM 48 C C5' FAD . . . O 2 -21.846 -16.489 48.354 1 59.36 ? C5' FAD 1384 C 1 HETATM 49 O O5' FAD . . . O 2 -20.852 -17.407 48.048 1 56.6 ? O5' FAD 1384 C 1 HETATM 50 P P FAD . . . O 2 -19.63 -17.555 49.051 1 56.55 ? P FAD 1384 C 1 HETATM 51 O O1P FAD . . . O 2 -18.643 -18.671 48.735 1 56.3 ? O1P FAD 1384 C 1 HETATM 52 O O2P FAD . . . O 2 -18.931 -16.214 49.157 1 55.57 ? O2P FAD 1384 C 1 HETATM 53 O O3P FAD . . . O 2 -20.321 -17.994 50.426 1 54.63 ? O3P FAD 1384 C 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #