data_2Y6R # _model_server_result.job_id rFS279NAnUPYccHcgL4eBw _model_server_result.datetime_utc '2024-11-07 22:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1384}' # _entry.id 2Y6R # _exptl.entry_id 2Y6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.99 _cell.angle_beta 90.27 _cell.angle_gamma 92.87 _cell.entry_id 2Y6R _cell.length_a 67.416 _cell.length_b 78.87 _cell.length_c 86.609 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,X 1 1 B,J,K,L,M,N,Y 2 1 C,O,P,Q,R,Z 3 1 D,S,T,U,V,W,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 O N N ? 2 S N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 142 n n PA O2A FAD sing 143 n n PA O5B FAD sing 144 n n PA O3P FAD sing 145 n n O2A HOA2 FAD sing 146 n n O5B C5B FAD sing 147 n n C5B C4B FAD sing 148 n n C5B H51A FAD sing 149 n n C5B H52A FAD sing 150 n n C4B O4B FAD sing 151 n n C4B C3B FAD sing 152 n n C4B H4B FAD sing 153 n n O4B C1B FAD sing 154 n n C3B O3B FAD sing 155 n n C3B C2B FAD sing 156 n n C3B H3B FAD sing 157 n n O3B HO3A FAD sing 158 n n C2B O2B FAD sing 159 n n C2B C1B FAD sing 160 n n C2B H2B FAD sing 161 n n O2B HO2A FAD sing 162 n n C1B N9A FAD sing 163 n n C1B H1B FAD sing 164 n n N9A C8A FAD sing 165 n y N9A C4A FAD sing 166 n y C8A N7A FAD doub 167 n y C8A H8A FAD sing 168 n n N7A C5A FAD sing 169 n y C5A C6A FAD sing 170 n y C5A C4A FAD doub 171 n y C6A N6A FAD sing 172 n n C6A N1A FAD doub 173 n y N6A H61A FAD sing 174 n n N6A H62A FAD sing 175 n n N1A C2A FAD sing 176 n y C2A N3A FAD doub 177 n y C2A H2A FAD sing 178 n n N3A C4A FAD sing 179 n y N1 C2 FAD sing 180 n n N1 C10 FAD doub 181 n n C2 O2 FAD doub 182 n n C2 N3 FAD sing 183 n n N3 C4 FAD sing 184 n n N3 HN3 FAD sing 185 n n C4 O4 FAD doub 186 n n C4 C4X FAD sing 187 n n C4X N5 FAD doub 188 n n C4X C10 FAD sing 189 n n N5 C5X FAD sing 190 n n C5X C6 FAD doub 191 n y C5X C9A FAD sing 192 n y C6 C7 FAD sing 193 n y C6 H6 FAD sing 194 n n C7 C7M FAD sing 195 n n C7 C8 FAD doub 196 n y C7M HM71 FAD sing 197 n n C7M HM72 FAD sing 198 n n C7M HM73 FAD sing 199 n n C8 C8M FAD sing 200 n n C8 C9 FAD sing 201 n y C8M HM81 FAD sing 202 n n C8M HM82 FAD sing 203 n n C8M HM83 FAD sing 204 n n C9 C9A FAD doub 205 n y C9 H9 FAD sing 206 n n C9A N10 FAD sing 207 n n N10 C10 FAD sing 208 n n N10 C1' FAD sing 209 n n C1' C2' FAD sing 210 n n C1' "H1'1" FAD sing 211 n n C1' "H1'2" FAD sing 212 n n C2' O2' FAD sing 213 n n C2' C3' FAD sing 214 n n C2' H2' FAD sing 215 n n O2' HO2' FAD sing 216 n n C3' O3' FAD sing 217 n n C3' C4' FAD sing 218 n n C3' H3' FAD sing 219 n n O3' HO3' FAD sing 220 n n C4' O4' FAD sing 221 n n C4' C5' FAD sing 222 n n C4' H4' FAD sing 223 n n O4' HO4' FAD sing 224 n n C5' O5' FAD sing 225 n n C5' "H5'1" FAD sing 226 n n C5' "H5'2" FAD sing 227 n n O5' P FAD sing 228 n n P O1P FAD doub 229 n n P O2P FAD sing 230 n n P O3P FAD sing 231 n n O2P HOP2 FAD sing 232 n n # _atom_sites.entry_id 2Y6R _atom_sites.fract_transf_matrix[1][1] 0.014833 _atom_sites.fract_transf_matrix[1][2] 0.000744 _atom_sites.fract_transf_matrix[1][3] 0.000361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012695 _atom_sites.fract_transf_matrix[2][3] 0.004881 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 1384 1384 FAD FAD . F 3 CTC A 1 1385 1385 CTC CTC . G 4 SO4 A 1 1386 1386 SO4 SO4 . H 4 SO4 A 1 1387 1387 SO4 SO4 . I 4 SO4 A 1 1388 1388 SO4 SO4 . J 2 FAD B 1 1384 1384 FAD FAD . K 3 CTC B 1 1385 1385 CTC CTC . L 4 SO4 B 1 1386 1386 SO4 SO4 . M 4 SO4 B 1 1387 1387 SO4 SO4 . N 4 SO4 B 1 1388 1388 SO4 SO4 . O 2 FAD C 1 1384 1384 FAD FAD . P 3 CTC C 1 1385 1385 CTC CTC . Q 4 SO4 C 1 1386 1386 SO4 SO4 . R 4 SO4 C 1 1387 1387 SO4 SO4 . S 2 FAD D 1 1384 1384 FAD FAD . T 3 CTC D 1 1385 1385 CTC CTC . U 4 SO4 D 1 1386 1386 SO4 SO4 . V 4 SO4 D 1 1387 1387 SO4 SO4 . W 4 SO4 D 1 1388 1388 SO4 SO4 . X 5 HOH A 1 2001 2001 HOH HOH . X 5 HOH A 2 2002 2002 HOH HOH . X 5 HOH A 3 2003 2003 HOH HOH . X 5 HOH A 4 2004 2004 HOH HOH . X 5 HOH A 5 2005 2005 HOH HOH . X 5 HOH A 6 2006 2006 HOH HOH . X 5 HOH A 7 2007 2007 HOH HOH . X 5 HOH A 8 2008 2008 HOH HOH . X 5 HOH A 9 2009 2009 HOH HOH . X 5 HOH A 10 2010 2010 HOH HOH . X 5 HOH A 11 2011 2011 HOH HOH . X 5 HOH A 12 2012 2012 HOH HOH . X 5 HOH A 13 2013 2013 HOH HOH . X 5 HOH A 14 2014 2014 HOH HOH . X 5 HOH A 15 2015 2015 HOH HOH . X 5 HOH A 16 2016 2016 HOH HOH . X 5 HOH A 17 2017 2017 HOH HOH . X 5 HOH A 18 2018 2018 HOH HOH . X 5 HOH A 19 2019 2019 HOH HOH . X 5 HOH A 20 2020 2020 HOH HOH . X 5 HOH A 21 2021 2021 HOH HOH . X 5 HOH A 22 2022 2022 HOH HOH . X 5 HOH A 23 2023 2023 HOH HOH . X 5 HOH A 24 2024 2024 HOH HOH . X 5 HOH A 25 2025 2025 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Y 5 HOH B 3 2003 2003 HOH HOH . Y 5 HOH B 4 2004 2004 HOH HOH . Y 5 HOH B 5 2005 2005 HOH HOH . Y 5 HOH B 6 2006 2006 HOH HOH . Y 5 HOH B 7 2007 2007 HOH HOH . Y 5 HOH B 8 2008 2008 HOH HOH . Y 5 HOH B 9 2009 2009 HOH HOH . Y 5 HOH B 10 2010 2010 HOH HOH . Y 5 HOH B 11 2011 2011 HOH HOH . Y 5 HOH B 12 2012 2012 HOH HOH . Y 5 HOH B 13 2013 2013 HOH HOH . Y 5 HOH B 14 2014 2014 HOH HOH . Y 5 HOH B 15 2015 2015 HOH HOH . Y 5 HOH B 16 2016 2016 HOH HOH . Y 5 HOH B 17 2017 2017 HOH HOH . Y 5 HOH B 18 2018 2018 HOH HOH . Y 5 HOH B 19 2019 2019 HOH HOH . Y 5 HOH B 20 2020 2020 HOH HOH . Y 5 HOH B 21 2021 2021 HOH HOH . Y 5 HOH B 22 2022 2022 HOH HOH . Y 5 HOH B 23 2023 2023 HOH HOH . Y 5 HOH B 24 2024 2024 HOH HOH . Y 5 HOH B 25 2025 2025 HOH HOH . Y 5 HOH B 26 2026 2026 HOH HOH . Y 5 HOH B 27 2027 2027 HOH HOH . Y 5 HOH B 28 2028 2028 HOH HOH . Y 5 HOH B 29 2029 2029 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . Z 5 HOH C 3 2003 2003 HOH HOH . Z 5 HOH C 4 2004 2004 HOH HOH . Z 5 HOH C 5 2005 2005 HOH HOH . Z 5 HOH C 6 2006 2006 HOH HOH . Z 5 HOH C 7 2007 2007 HOH HOH . Z 5 HOH C 8 2008 2008 HOH HOH . Z 5 HOH C 9 2009 2009 HOH HOH . Z 5 HOH C 10 2010 2010 HOH HOH . Z 5 HOH C 11 2011 2011 HOH HOH . Z 5 HOH C 12 2012 2012 HOH HOH . Z 5 HOH C 13 2013 2013 HOH HOH . Z 5 HOH C 14 2014 2014 HOH HOH . Z 5 HOH C 15 2015 2015 HOH HOH . Z 5 HOH C 16 2016 2016 HOH HOH . Z 5 HOH C 17 2017 2017 HOH HOH . Z 5 HOH C 18 2018 2018 HOH HOH . Z 5 HOH C 19 2019 2019 HOH HOH . Z 5 HOH C 20 2020 2020 HOH HOH . Z 5 HOH C 21 2021 2021 HOH HOH . Z 5 HOH C 22 2022 2022 HOH HOH . Z 5 HOH C 23 2023 2023 HOH HOH . AA 5 HOH D 1 2001 2001 HOH HOH . AA 5 HOH D 2 2002 2002 HOH HOH . AA 5 HOH D 3 2003 2003 HOH HOH . AA 5 HOH D 4 2004 2004 HOH HOH . AA 5 HOH D 5 2005 2005 HOH HOH . AA 5 HOH D 6 2006 2006 HOH HOH . AA 5 HOH D 7 2007 2007 HOH HOH . AA 5 HOH D 8 2008 2008 HOH HOH . AA 5 HOH D 9 2009 2009 HOH HOH . AA 5 HOH D 10 2010 2010 HOH HOH . AA 5 HOH D 11 2011 2011 HOH HOH . AA 5 HOH D 12 2012 2012 HOH HOH . AA 5 HOH D 13 2013 2013 HOH HOH . AA 5 HOH D 14 2014 2014 HOH HOH . AA 5 HOH D 15 2015 2015 HOH HOH . AA 5 HOH D 16 2016 2016 HOH HOH . AA 5 HOH D 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . S 2 12.079 -25.349 4.408 1 40.05 ? PA FAD 1384 D 1 HETATM 2 O O1A FAD . . . S 2 10.838 -25.539 3.549 1 35.68 ? O1A FAD 1384 D 1 HETATM 3 O O2A FAD . . . S 2 11.853 -24.762 5.761 1 41.8 ? O2A FAD 1384 D 1 HETATM 4 O O5B FAD . . . S 2 13.27 -24.531 3.68 1 41.38 ? O5B FAD 1384 D 1 HETATM 5 C C5B FAD . . . S 2 13.02 -23.944 2.419 1 42.77 ? C5B FAD 1384 D 1 HETATM 6 C C4B FAD . . . S 2 13.536 -22.511 2.301 1 42.64 ? C4B FAD 1384 D 1 HETATM 7 O O4B FAD . . . S 2 14.181 -22.387 1.058 1 42.47 ? O4B FAD 1384 D 1 HETATM 8 C C3B FAD . . . S 2 12.395 -21.514 2.301 1 42.48 ? C3B FAD 1384 D 1 HETATM 9 O O3B FAD . . . S 2 12.747 -20.465 3.164 1 42.84 ? O3B FAD 1384 D 1 HETATM 10 C C2B FAD . . . S 2 12.278 -21.027 0.869 1 43.04 ? C2B FAD 1384 D 1 HETATM 11 O O2B FAD . . . S 2 12.012 -19.641 0.775 1 40.91 ? O2B FAD 1384 D 1 HETATM 12 C C1B FAD . . . S 2 13.647 -21.328 0.305 1 42.98 ? C1B FAD 1384 D 1 HETATM 13 N N9A FAD . . . S 2 13.683 -21.695 -1.12 1 43.84 ? N9A FAD 1384 D 1 HETATM 14 C C8A FAD . . . S 2 12.894 -22.565 -1.808 1 42.66 ? C8A FAD 1384 D 1 HETATM 15 N N7A FAD . . . S 2 13.344 -22.582 -3.094 1 44.85 ? N7A FAD 1384 D 1 HETATM 16 C C5A FAD . . . S 2 14.41 -21.766 -3.228 1 44.86 ? C5A FAD 1384 D 1 HETATM 17 C C6A FAD . . . S 2 15.228 -21.414 -4.307 1 46.36 ? C6A FAD 1384 D 1 HETATM 18 N N6A FAD . . . S 2 14.696 -21.407 -5.533 1 44.75 ? N6A FAD 1384 D 1 HETATM 19 N N1A FAD . . . S 2 16.282 -20.522 -4.077 1 48.18 ? N1A FAD 1384 D 1 HETATM 20 C C2A FAD . . . S 2 16.502 -19.968 -2.818 1 46.19 ? C2A FAD 1384 D 1 HETATM 21 N N3A FAD . . . S 2 15.67 -20.311 -1.778 1 44.89 ? N3A FAD 1384 D 1 HETATM 22 C C4A FAD . . . S 2 14.636 -21.192 -1.982 1 45.22 ? C4A FAD 1384 D 1 HETATM 23 N N1 FAD . . . S 2 8.773 -30.916 11.019 1 67.36 ? N1 FAD 1384 D 1 HETATM 24 C C2 FAD . . . S 2 9.128 -31.021 12.331 1 68.65 ? C2 FAD 1384 D 1 HETATM 25 O O2 FAD . . . S 2 10.31 -31.295 12.58 1 68.73 ? O2 FAD 1384 D 1 HETATM 26 N N3 FAD . . . S 2 8.164 -30.821 13.318 1 68.49 ? N3 FAD 1384 D 1 HETATM 27 C C4 FAD . . . S 2 6.855 -30.533 12.977 1 67.63 ? C4 FAD 1384 D 1 HETATM 28 O O4 FAD . . . S 2 6.049 -30.371 13.89 1 68.05 ? O4 FAD 1384 D 1 HETATM 29 C C4X FAD . . . S 2 6.492 -30.423 11.625 1 67.2 ? C4X FAD 1384 D 1 HETATM 30 N N5 FAD . . . S 2 5.204 -30.121 11.184 1 66.26 ? N5 FAD 1384 D 1 HETATM 31 C C5X FAD . . . S 2 4.93 -30.031 9.825 1 65.25 ? C5X FAD 1384 D 1 HETATM 32 C C6 FAD . . . S 2 3.65 -29.746 9.365 1 65.61 ? C6 FAD 1384 D 1 HETATM 33 C C7 FAD . . . S 2 3.397 -29.664 7.988 1 66.1 ? C7 FAD 1384 D 1 HETATM 34 C C7M FAD . . . S 2 2.001 -29.35 7.534 1 66.65 ? C7M FAD 1384 D 1 HETATM 35 C C8 FAD . . . S 2 4.428 -29.87 7.05 1 65.77 ? C8 FAD 1384 D 1 HETATM 36 C C8M FAD . . . S 2 4.195 -29.801 5.564 1 66.13 ? C8M FAD 1384 D 1 HETATM 37 C C9 FAD . . . S 2 5.706 -30.154 7.506 1 64.66 ? C9 FAD 1384 D 1 HETATM 38 C C9A FAD . . . S 2 5.942 -30.236 8.884 1 65.26 ? C9A FAD 1384 D 1 HETATM 39 N N10 FAD . . . S 2 7.206 -30.536 9.331 1 65.85 ? N10 FAD 1384 D 1 HETATM 40 C C10 FAD . . . S 2 7.481 -30.619 10.671 1 66.71 ? C10 FAD 1384 D 1 HETATM 41 C C1' FAD . . . S 2 8.337 -30.723 8.361 1 65.23 ? C1' FAD 1384 D 1 HETATM 42 C C2' FAD . . . S 2 9.159 -29.419 8.499 1 62.48 ? C2' FAD 1384 D 1 HETATM 43 O O2' FAD . . . S 2 8.442 -28.265 8.07 1 65.59 ? O2' FAD 1384 D 1 HETATM 44 C C3' FAD . . . S 2 10.488 -29.45 7.766 1 58.04 ? C3' FAD 1384 D 1 HETATM 45 O O3' FAD . . . S 2 11.285 -30.526 8.177 1 59.08 ? O3' FAD 1384 D 1 HETATM 46 C C4' FAD . . . S 2 11.317 -28.229 8.053 1 52.91 ? C4' FAD 1384 D 1 HETATM 47 O O4' FAD . . . S 2 10.55 -27.061 7.861 1 52.36 ? O4' FAD 1384 D 1 HETATM 48 C C5' FAD . . . S 2 12.449 -28.365 7.075 1 48.92 ? C5' FAD 1384 D 1 HETATM 49 O O5' FAD . . . S 2 13.175 -27.192 6.979 1 46.6 ? O5' FAD 1384 D 1 HETATM 50 P P FAD . . . S 2 13.998 -26.984 5.63 1 47.1 ? P FAD 1384 D 1 HETATM 51 O O1P FAD . . . S 2 14.953 -25.797 5.76 1 50.4 ? O1P FAD 1384 D 1 HETATM 52 O O2P FAD . . . S 2 14.81 -28.161 5.121 1 46.71 ? O2P FAD 1384 D 1 HETATM 53 O O3P FAD . . . S 2 12.725 -26.776 4.691 1 43.55 ? O3P FAD 1384 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #