data_2Y6R # _model_server_result.job_id 3uXNHr5RkMg87MUydwTicA _model_server_result.datetime_utc '2024-11-07 21:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1385}' # _entry.id 2Y6R # _exptl.entry_id 2Y6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.88 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-CHLOROTETRACYCLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.99 _cell.angle_beta 90.27 _cell.angle_gamma 92.87 _cell.entry_id 2Y6R _cell.length_a 67.416 _cell.length_b 78.87 _cell.length_c 86.609 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,X 1 1 B,J,K,L,M,N,Y 2 1 C,O,P,Q,R,Z 3 1 D,S,T,U,V,W,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 P N N ? 3 T N N # _chem_comp.formula 'C22 H23 Cl N2 O8' _chem_comp.formula_weight 478.88 _chem_comp.id CTC _chem_comp.mon_nstd_flag . _chem_comp.name 7-CHLOROTETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CTC doub 70 n n C1 C2 CTC sing 71 n n C1 C4B CTC sing 72 n n C2 C2' CTC sing 73 n n C2 C3 CTC doub 74 n n C2' O2' CTC doub 75 n n C2' N2' CTC sing 76 n n N2' HN21 CTC sing 77 n n N2' HN22 CTC sing 78 n n C3 O3 CTC sing 79 n n C3 C4 CTC sing 80 n n O3 HO3 CTC sing 81 n n C4 N4 CTC sing 82 n n C4 C4A CTC sing 83 n n C4 H4 CTC sing 84 n n N4 C4' CTC sing 85 n n N4 C4D CTC sing 86 n n C4' "H4'1" CTC sing 87 n n C4' "H4'2" CTC sing 88 n n C4' "H4'3" CTC sing 89 n n C4D H4A1 CTC sing 90 n n C4D H4A2 CTC sing 91 n n C4D H4A3 CTC sing 92 n n C4A C5 CTC sing 93 n n C4A C4B CTC sing 94 n n C4A H4A CTC sing 95 n n C5 C5A CTC sing 96 n n C5 H51 CTC sing 97 n n C5 H52 CTC sing 98 n n C5A C6 CTC sing 99 n n C5A C5B CTC sing 100 n n C5A H5A CTC sing 101 n n C6 O6 CTC sing 102 n n C6 C6' CTC sing 103 n n C6 C6A CTC sing 104 n n O6 HO6 CTC sing 105 n n C6' "H6'1" CTC sing 106 n n C6' "H6'2" CTC sing 107 n n C6' "H6'3" CTC sing 108 n n C6A C7 CTC doub 109 n y C6A C6B CTC sing 110 n y C7 CL7 CTC sing 111 n n C7 C8 CTC sing 112 n y C8 C9 CTC doub 113 n y C8 H8 CTC sing 114 n n C9 C10 CTC sing 115 n y C9 H9 CTC sing 116 n n C10 O10 CTC sing 117 n n C10 C6B CTC doub 118 n y O10 HO1 CTC sing 119 n n C6B C11 CTC sing 120 n n C11 O11 CTC doub 121 n n C11 C5B CTC sing 122 n n C5B C12 CTC doub 123 n n C12 O12 CTC sing 124 n n C12 C4B CTC sing 125 n n O12 HO2 CTC sing 126 n n C4B O4B CTC sing 127 n n O4B HO4 CTC sing 128 n n # _atom_sites.entry_id 2Y6R _atom_sites.fract_transf_matrix[1][1] 0.014833 _atom_sites.fract_transf_matrix[1][2] 0.000744 _atom_sites.fract_transf_matrix[1][3] 0.000361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012695 _atom_sites.fract_transf_matrix[2][3] 0.004881 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 1384 1384 FAD FAD . F 3 CTC A 1 1385 1385 CTC CTC . G 4 SO4 A 1 1386 1386 SO4 SO4 . H 4 SO4 A 1 1387 1387 SO4 SO4 . I 4 SO4 A 1 1388 1388 SO4 SO4 . J 2 FAD B 1 1384 1384 FAD FAD . K 3 CTC B 1 1385 1385 CTC CTC . L 4 SO4 B 1 1386 1386 SO4 SO4 . M 4 SO4 B 1 1387 1387 SO4 SO4 . N 4 SO4 B 1 1388 1388 SO4 SO4 . O 2 FAD C 1 1384 1384 FAD FAD . P 3 CTC C 1 1385 1385 CTC CTC . Q 4 SO4 C 1 1386 1386 SO4 SO4 . R 4 SO4 C 1 1387 1387 SO4 SO4 . S 2 FAD D 1 1384 1384 FAD FAD . T 3 CTC D 1 1385 1385 CTC CTC . U 4 SO4 D 1 1386 1386 SO4 SO4 . V 4 SO4 D 1 1387 1387 SO4 SO4 . W 4 SO4 D 1 1388 1388 SO4 SO4 . X 5 HOH A 1 2001 2001 HOH HOH . X 5 HOH A 2 2002 2002 HOH HOH . X 5 HOH A 3 2003 2003 HOH HOH . X 5 HOH A 4 2004 2004 HOH HOH . X 5 HOH A 5 2005 2005 HOH HOH . X 5 HOH A 6 2006 2006 HOH HOH . X 5 HOH A 7 2007 2007 HOH HOH . X 5 HOH A 8 2008 2008 HOH HOH . X 5 HOH A 9 2009 2009 HOH HOH . X 5 HOH A 10 2010 2010 HOH HOH . X 5 HOH A 11 2011 2011 HOH HOH . X 5 HOH A 12 2012 2012 HOH HOH . X 5 HOH A 13 2013 2013 HOH HOH . X 5 HOH A 14 2014 2014 HOH HOH . X 5 HOH A 15 2015 2015 HOH HOH . X 5 HOH A 16 2016 2016 HOH HOH . X 5 HOH A 17 2017 2017 HOH HOH . X 5 HOH A 18 2018 2018 HOH HOH . X 5 HOH A 19 2019 2019 HOH HOH . X 5 HOH A 20 2020 2020 HOH HOH . X 5 HOH A 21 2021 2021 HOH HOH . X 5 HOH A 22 2022 2022 HOH HOH . X 5 HOH A 23 2023 2023 HOH HOH . X 5 HOH A 24 2024 2024 HOH HOH . X 5 HOH A 25 2025 2025 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Y 5 HOH B 3 2003 2003 HOH HOH . Y 5 HOH B 4 2004 2004 HOH HOH . Y 5 HOH B 5 2005 2005 HOH HOH . Y 5 HOH B 6 2006 2006 HOH HOH . Y 5 HOH B 7 2007 2007 HOH HOH . Y 5 HOH B 8 2008 2008 HOH HOH . Y 5 HOH B 9 2009 2009 HOH HOH . Y 5 HOH B 10 2010 2010 HOH HOH . Y 5 HOH B 11 2011 2011 HOH HOH . Y 5 HOH B 12 2012 2012 HOH HOH . Y 5 HOH B 13 2013 2013 HOH HOH . Y 5 HOH B 14 2014 2014 HOH HOH . Y 5 HOH B 15 2015 2015 HOH HOH . Y 5 HOH B 16 2016 2016 HOH HOH . Y 5 HOH B 17 2017 2017 HOH HOH . Y 5 HOH B 18 2018 2018 HOH HOH . Y 5 HOH B 19 2019 2019 HOH HOH . Y 5 HOH B 20 2020 2020 HOH HOH . Y 5 HOH B 21 2021 2021 HOH HOH . Y 5 HOH B 22 2022 2022 HOH HOH . Y 5 HOH B 23 2023 2023 HOH HOH . Y 5 HOH B 24 2024 2024 HOH HOH . Y 5 HOH B 25 2025 2025 HOH HOH . Y 5 HOH B 26 2026 2026 HOH HOH . Y 5 HOH B 27 2027 2027 HOH HOH . Y 5 HOH B 28 2028 2028 HOH HOH . Y 5 HOH B 29 2029 2029 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . Z 5 HOH C 3 2003 2003 HOH HOH . Z 5 HOH C 4 2004 2004 HOH HOH . Z 5 HOH C 5 2005 2005 HOH HOH . Z 5 HOH C 6 2006 2006 HOH HOH . Z 5 HOH C 7 2007 2007 HOH HOH . Z 5 HOH C 8 2008 2008 HOH HOH . Z 5 HOH C 9 2009 2009 HOH HOH . Z 5 HOH C 10 2010 2010 HOH HOH . Z 5 HOH C 11 2011 2011 HOH HOH . Z 5 HOH C 12 2012 2012 HOH HOH . Z 5 HOH C 13 2013 2013 HOH HOH . Z 5 HOH C 14 2014 2014 HOH HOH . Z 5 HOH C 15 2015 2015 HOH HOH . Z 5 HOH C 16 2016 2016 HOH HOH . Z 5 HOH C 17 2017 2017 HOH HOH . Z 5 HOH C 18 2018 2018 HOH HOH . Z 5 HOH C 19 2019 2019 HOH HOH . Z 5 HOH C 20 2020 2020 HOH HOH . Z 5 HOH C 21 2021 2021 HOH HOH . Z 5 HOH C 22 2022 2022 HOH HOH . Z 5 HOH C 23 2023 2023 HOH HOH . AA 5 HOH D 1 2001 2001 HOH HOH . AA 5 HOH D 2 2002 2002 HOH HOH . AA 5 HOH D 3 2003 2003 HOH HOH . AA 5 HOH D 4 2004 2004 HOH HOH . AA 5 HOH D 5 2005 2005 HOH HOH . AA 5 HOH D 6 2006 2006 HOH HOH . AA 5 HOH D 7 2007 2007 HOH HOH . AA 5 HOH D 8 2008 2008 HOH HOH . AA 5 HOH D 9 2009 2009 HOH HOH . AA 5 HOH D 10 2010 2010 HOH HOH . AA 5 HOH D 11 2011 2011 HOH HOH . AA 5 HOH D 12 2012 2012 HOH HOH . AA 5 HOH D 13 2013 2013 HOH HOH . AA 5 HOH D 14 2014 2014 HOH HOH . AA 5 HOH D 15 2015 2015 HOH HOH . AA 5 HOH D 16 2016 2016 HOH HOH . AA 5 HOH D 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CTC . . . F 3 0.781 6.362 20.584 1 100.7 ? C1 CTC 1385 A 1 HETATM 2 O O1 CTC . . . F 3 0.698 5.802 21.706 1 101.14 ? O1 CTC 1385 A 1 HETATM 3 C C2 CTC . . . F 3 1.895 6.03 19.725 1 101.13 ? C2 CTC 1385 A 1 HETATM 4 C C2' CTC . . . F 3 2.389 4.628 19.806 1 101.42 ? C2' CTC 1385 A 1 HETATM 5 O O2' CTC . . . F 3 3.467 4.306 19.321 1 101.36 ? O2' CTC 1385 A 1 HETATM 6 N N2' CTC . . . F 3 1.674 3.708 20.481 1 101.24 ? N2' CTC 1385 A 1 HETATM 7 C C3 CTC . . . F 3 2.371 7.051 18.92 1 101.36 ? C3 CTC 1385 A 1 HETATM 8 O O3 CTC . . . F 3 3.391 6.874 18.076 1 102.22 ? O3 CTC 1385 A 1 HETATM 9 C C4 CTC . . . F 3 1.793 8.481 18.98 1 100.83 ? C4 CTC 1385 A 1 HETATM 10 N N4 CTC . . . F 3 1.769 9.156 17.659 1 101.03 ? N4 CTC 1385 A 1 HETATM 11 C C4' CTC . . . F 3 1.247 8.325 16.546 1 99.85 ? C4' CTC 1385 A 1 HETATM 12 C C4D CTC . . . F 3 1.051 10.457 17.735 1 101.39 ? C4D CTC 1385 A 1 HETATM 13 C C4A CTC . . . F 3 0.48 8.676 19.784 1 100.52 ? C4A CTC 1385 A 1 HETATM 14 C C5 CTC . . . F 3 0.765 9.388 21.112 1 101.36 ? C5 CTC 1385 A 1 HETATM 15 C C5A CTC . . . F 3 -0.498 9.743 21.92 1 101.83 ? C5A CTC 1385 A 1 HETATM 16 C C6 CTC . . . F 3 -0.239 10.231 23.355 1 101.91 ? C6 CTC 1385 A 1 HETATM 17 O O6 CTC . . . F 3 0.269 9.156 24.18 1 101.69 ? O6 CTC 1385 A 1 HETATM 18 C C6' CTC . . . F 3 0.823 11.331 23.365 1 101.78 ? C6' CTC 1385 A 1 HETATM 19 C C6A CTC . . . F 3 -1.562 10.623 23.99 1 102.92 ? C6A CTC 1385 A 1 HETATM 20 C C7 CTC . . . F 3 -1.746 11.772 24.785 1 103.68 ? C7 CTC 1385 A 1 HETATM 21 CL CL7 CTC . . . F 3 -0.419 12.9 25.113 1 105.43 ? CL7 CTC 1385 A 1 HETATM 22 C C8 CTC . . . F 3 -2.981 12.092 25.357 1 103.44 ? C8 CTC 1385 A 1 HETATM 23 C C9 CTC . . . F 3 -4.066 11.254 25.169 1 103.52 ? C9 CTC 1385 A 1 HETATM 24 C C10 CTC . . . F 3 -3.909 10.104 24.388 1 104.06 ? C10 CTC 1385 A 1 HETATM 25 O O10 CTC . . . F 3 -4.972 9.319 24.222 1 105.28 ? O10 CTC 1385 A 1 HETATM 26 C C6B CTC . . . F 3 -2.669 9.778 23.798 1 103.47 ? C6B CTC 1385 A 1 HETATM 27 C C11 CTC . . . F 3 -2.513 8.581 22.967 1 102.96 ? C11 CTC 1385 A 1 HETATM 28 O O11 CTC . . . F 3 -3.374 7.609 23.062 1 103.92 ? O11 CTC 1385 A 1 HETATM 29 C C5B CTC . . . F 3 -1.477 8.559 21.988 1 101.77 ? C5B CTC 1385 A 1 HETATM 30 C C12 CTC . . . F 3 -1.366 7.46 21.092 1 100.38 ? C12 CTC 1385 A 1 HETATM 31 O O12 CTC . . . F 3 -2.19 6.424 21.143 1 99.24 ? O12 CTC 1385 A 1 HETATM 32 C C4B CTC . . . F 3 -0.25 7.373 20.051 1 100.27 ? C4B CTC 1385 A 1 HETATM 33 O O4B CTC . . . F 3 -0.841 6.96 18.802 1 100.04 ? O4B CTC 1385 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #