data_2Y6R
#
_model_server_result.job_id            q3ijY0BHpX0VgkuU168qww 
_model_server_result.datetime_utc      '2024-11-07 21:31:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1385}' 
#
_entry.id    2Y6R 
#
_exptl.entry_id    2Y6R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              478.88 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-CHLOROTETRACYCLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         110.99 
_cell.angle_beta          90.27 
_cell.angle_gamma         92.87 
_cell.entry_id            2Y6R 
_cell.length_a            67.416 
_cell.length_b            78.87 
_cell.length_c            86.609 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,X 1 1 
B,J,K,L,M,N,Y 2 1 
C,O,P,Q,R,Z 3 1 
D,S,T,U,V,W,AA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
? 3 P N N 
? 3 T N N 
#
_chem_comp.formula           'C22 H23 Cl N2 O8' 
_chem_comp.formula_weight    478.88 
_chem_comp.id                CTC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-CHLOROTETRACYCLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CTC doub 70 n n 
C1 C2 CTC sing 71 n n 
C1 C4B CTC sing 72 n n 
C2 C2' CTC sing 73 n n 
C2 C3 CTC doub 74 n n 
C2' O2' CTC doub 75 n n 
C2' N2' CTC sing 76 n n 
N2' HN21 CTC sing 77 n n 
N2' HN22 CTC sing 78 n n 
C3 O3 CTC sing 79 n n 
C3 C4 CTC sing 80 n n 
O3 HO3 CTC sing 81 n n 
C4 N4 CTC sing 82 n n 
C4 C4A CTC sing 83 n n 
C4 H4 CTC sing 84 n n 
N4 C4' CTC sing 85 n n 
N4 C4D CTC sing 86 n n 
C4' "H4'1" CTC sing 87 n n 
C4' "H4'2" CTC sing 88 n n 
C4' "H4'3" CTC sing 89 n n 
C4D H4A1 CTC sing 90 n n 
C4D H4A2 CTC sing 91 n n 
C4D H4A3 CTC sing 92 n n 
C4A C5 CTC sing 93 n n 
C4A C4B CTC sing 94 n n 
C4A H4A CTC sing 95 n n 
C5 C5A CTC sing 96 n n 
C5 H51 CTC sing 97 n n 
C5 H52 CTC sing 98 n n 
C5A C6 CTC sing 99 n n 
C5A C5B CTC sing 100 n n 
C5A H5A CTC sing 101 n n 
C6 O6 CTC sing 102 n n 
C6 C6' CTC sing 103 n n 
C6 C6A CTC sing 104 n n 
O6 HO6 CTC sing 105 n n 
C6' "H6'1" CTC sing 106 n n 
C6' "H6'2" CTC sing 107 n n 
C6' "H6'3" CTC sing 108 n n 
C6A C7 CTC doub 109 n y 
C6A C6B CTC sing 110 n y 
C7 CL7 CTC sing 111 n n 
C7 C8 CTC sing 112 n y 
C8 C9 CTC doub 113 n y 
C8 H8 CTC sing 114 n n 
C9 C10 CTC sing 115 n y 
C9 H9 CTC sing 116 n n 
C10 O10 CTC sing 117 n n 
C10 C6B CTC doub 118 n y 
O10 HO1 CTC sing 119 n n 
C6B C11 CTC sing 120 n n 
C11 O11 CTC doub 121 n n 
C11 C5B CTC sing 122 n n 
C5B C12 CTC doub 123 n n 
C12 O12 CTC sing 124 n n 
C12 C4B CTC sing 125 n n 
O12 HO2 CTC sing 126 n n 
C4B O4B CTC sing 127 n n 
O4B HO4 CTC sing 128 n n 
#
_atom_sites.entry_id                     2Y6R 
_atom_sites.fract_transf_matrix[1][1]    0.014833 
_atom_sites.fract_transf_matrix[1][2]    0.000744 
_atom_sites.fract_transf_matrix[1][3]    0.000361 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012695 
_atom_sites.fract_transf_matrix[2][3]    0.004881 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 1384 1384 FAD FAD . 
F 3 CTC A 1 1385 1385 CTC CTC . 
G 4 SO4 A 1 1386 1386 SO4 SO4 . 
H 4 SO4 A 1 1387 1387 SO4 SO4 . 
I 4 SO4 A 1 1388 1388 SO4 SO4 . 
J 2 FAD B 1 1384 1384 FAD FAD . 
K 3 CTC B 1 1385 1385 CTC CTC . 
L 4 SO4 B 1 1386 1386 SO4 SO4 . 
M 4 SO4 B 1 1387 1387 SO4 SO4 . 
N 4 SO4 B 1 1388 1388 SO4 SO4 . 
O 2 FAD C 1 1384 1384 FAD FAD . 
P 3 CTC C 1 1385 1385 CTC CTC . 
Q 4 SO4 C 1 1386 1386 SO4 SO4 . 
R 4 SO4 C 1 1387 1387 SO4 SO4 . 
S 2 FAD D 1 1384 1384 FAD FAD . 
T 3 CTC D 1 1385 1385 CTC CTC . 
U 4 SO4 D 1 1386 1386 SO4 SO4 . 
V 4 SO4 D 1 1387 1387 SO4 SO4 . 
W 4 SO4 D 1 1388 1388 SO4 SO4 . 
X 5 HOH A 1 2001 2001 HOH HOH . 
X 5 HOH A 2 2002 2002 HOH HOH . 
X 5 HOH A 3 2003 2003 HOH HOH . 
X 5 HOH A 4 2004 2004 HOH HOH . 
X 5 HOH A 5 2005 2005 HOH HOH . 
X 5 HOH A 6 2006 2006 HOH HOH . 
X 5 HOH A 7 2007 2007 HOH HOH . 
X 5 HOH A 8 2008 2008 HOH HOH . 
X 5 HOH A 9 2009 2009 HOH HOH . 
X 5 HOH A 10 2010 2010 HOH HOH . 
X 5 HOH A 11 2011 2011 HOH HOH . 
X 5 HOH A 12 2012 2012 HOH HOH . 
X 5 HOH A 13 2013 2013 HOH HOH . 
X 5 HOH A 14 2014 2014 HOH HOH . 
X 5 HOH A 15 2015 2015 HOH HOH . 
X 5 HOH A 16 2016 2016 HOH HOH . 
X 5 HOH A 17 2017 2017 HOH HOH . 
X 5 HOH A 18 2018 2018 HOH HOH . 
X 5 HOH A 19 2019 2019 HOH HOH . 
X 5 HOH A 20 2020 2020 HOH HOH . 
X 5 HOH A 21 2021 2021 HOH HOH . 
X 5 HOH A 22 2022 2022 HOH HOH . 
X 5 HOH A 23 2023 2023 HOH HOH . 
X 5 HOH A 24 2024 2024 HOH HOH . 
X 5 HOH A 25 2025 2025 HOH HOH . 
Y 5 HOH B 1 2001 2001 HOH HOH . 
Y 5 HOH B 2 2002 2002 HOH HOH . 
Y 5 HOH B 3 2003 2003 HOH HOH . 
Y 5 HOH B 4 2004 2004 HOH HOH . 
Y 5 HOH B 5 2005 2005 HOH HOH . 
Y 5 HOH B 6 2006 2006 HOH HOH . 
Y 5 HOH B 7 2007 2007 HOH HOH . 
Y 5 HOH B 8 2008 2008 HOH HOH . 
Y 5 HOH B 9 2009 2009 HOH HOH . 
Y 5 HOH B 10 2010 2010 HOH HOH . 
Y 5 HOH B 11 2011 2011 HOH HOH . 
Y 5 HOH B 12 2012 2012 HOH HOH . 
Y 5 HOH B 13 2013 2013 HOH HOH . 
Y 5 HOH B 14 2014 2014 HOH HOH . 
Y 5 HOH B 15 2015 2015 HOH HOH . 
Y 5 HOH B 16 2016 2016 HOH HOH . 
Y 5 HOH B 17 2017 2017 HOH HOH . 
Y 5 HOH B 18 2018 2018 HOH HOH . 
Y 5 HOH B 19 2019 2019 HOH HOH . 
Y 5 HOH B 20 2020 2020 HOH HOH . 
Y 5 HOH B 21 2021 2021 HOH HOH . 
Y 5 HOH B 22 2022 2022 HOH HOH . 
Y 5 HOH B 23 2023 2023 HOH HOH . 
Y 5 HOH B 24 2024 2024 HOH HOH . 
Y 5 HOH B 25 2025 2025 HOH HOH . 
Y 5 HOH B 26 2026 2026 HOH HOH . 
Y 5 HOH B 27 2027 2027 HOH HOH . 
Y 5 HOH B 28 2028 2028 HOH HOH . 
Y 5 HOH B 29 2029 2029 HOH HOH . 
Z 5 HOH C 1 2001 2001 HOH HOH . 
Z 5 HOH C 2 2002 2002 HOH HOH . 
Z 5 HOH C 3 2003 2003 HOH HOH . 
Z 5 HOH C 4 2004 2004 HOH HOH . 
Z 5 HOH C 5 2005 2005 HOH HOH . 
Z 5 HOH C 6 2006 2006 HOH HOH . 
Z 5 HOH C 7 2007 2007 HOH HOH . 
Z 5 HOH C 8 2008 2008 HOH HOH . 
Z 5 HOH C 9 2009 2009 HOH HOH . 
Z 5 HOH C 10 2010 2010 HOH HOH . 
Z 5 HOH C 11 2011 2011 HOH HOH . 
Z 5 HOH C 12 2012 2012 HOH HOH . 
Z 5 HOH C 13 2013 2013 HOH HOH . 
Z 5 HOH C 14 2014 2014 HOH HOH . 
Z 5 HOH C 15 2015 2015 HOH HOH . 
Z 5 HOH C 16 2016 2016 HOH HOH . 
Z 5 HOH C 17 2017 2017 HOH HOH . 
Z 5 HOH C 18 2018 2018 HOH HOH . 
Z 5 HOH C 19 2019 2019 HOH HOH . 
Z 5 HOH C 20 2020 2020 HOH HOH . 
Z 5 HOH C 21 2021 2021 HOH HOH . 
Z 5 HOH C 22 2022 2022 HOH HOH . 
Z 5 HOH C 23 2023 2023 HOH HOH . 
AA 5 HOH D 1 2001 2001 HOH HOH . 
AA 5 HOH D 2 2002 2002 HOH HOH . 
AA 5 HOH D 3 2003 2003 HOH HOH . 
AA 5 HOH D 4 2004 2004 HOH HOH . 
AA 5 HOH D 5 2005 2005 HOH HOH . 
AA 5 HOH D 6 2006 2006 HOH HOH . 
AA 5 HOH D 7 2007 2007 HOH HOH . 
AA 5 HOH D 8 2008 2008 HOH HOH . 
AA 5 HOH D 9 2009 2009 HOH HOH . 
AA 5 HOH D 10 2010 2010 HOH HOH . 
AA 5 HOH D 11 2011 2011 HOH HOH . 
AA 5 HOH D 12 2012 2012 HOH HOH . 
AA 5 HOH D 13 2013 2013 HOH HOH . 
AA 5 HOH D 14 2014 2014 HOH HOH . 
AA 5 HOH D 15 2015 2015 HOH HOH . 
AA 5 HOH D 16 2016 2016 HOH HOH . 
AA 5 HOH D 17 2017 2017 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CTC . . . P 3 -33.39 -13.9 41.272 1 107.38 ? C1 CTC 1385 C 1 
HETATM 2 O O1 CTC . . . P 3 -33.313 -14.349 40.105 1 108.04 ? O1 CTC 1385 C 1 
HETATM 3 C C2 CTC . . . P 3 -34.541 -14.229 42.109 1 106.74 ? C2 CTC 1385 C 1 
HETATM 4 C C2' CTC . . . P 3 -35.323 -15.464 41.854 1 106.66 ? C2' CTC 1385 C 1 
HETATM 5 O O2' CTC . . . P 3 -36.148 -15.864 42.666 1 106.26 ? O2' CTC 1385 C 1 
HETATM 6 N N2' CTC . . . P 3 -35.158 -16.134 40.706 1 106.06 ? N2' CTC 1385 C 1 
HETATM 7 C C3 CTC . . . P 3 -34.867 -13.358 43.113 1 106.49 ? C3 CTC 1385 C 1 
HETATM 8 O O3 CTC . . . P 3 -35.908 -13.61 43.901 1 105.77 ? O3 CTC 1385 C 1 
HETATM 9 C C4 CTC . . . P 3 -34.103 -12.054 43.37 1 107.13 ? C4 CTC 1385 C 1 
HETATM 10 N N4 CTC . . . P 3 -33.644 -11.963 44.753 1 107.36 ? N4 CTC 1385 C 1 
HETATM 11 C C4' CTC . . . P 3 -33.015 -10.638 44.937 1 107.68 ? C4' CTC 1385 C 1 
HETATM 12 C C4D CTC . . . P 3 -34.783 -12.057 45.704 1 106.84 ? C4D CTC 1385 C 1 
HETATM 13 C C4A CTC . . . P 3 -32.889 -11.762 42.455 1 107.77 ? C4A CTC 1385 C 1 
HETATM 14 C C5 CTC . . . P 3 -33.206 -10.723 41.38 1 108.95 ? C5 CTC 1385 C 1 
HETATM 15 C C5A CTC . . . P 3 -31.965 -10.255 40.601 1 109.87 ? C5A CTC 1385 C 1 
HETATM 16 C C6 CTC . . . P 3 -32.329 -9.405 39.38 1 110.84 ? C6 CTC 1385 C 1 
HETATM 17 O O6 CTC . . . P 3 -33.049 -10.185 38.394 1 110.37 ? O6 CTC 1385 C 1 
HETATM 18 C C6' CTC . . . P 3 -33.204 -8.225 39.829 1 110.64 ? C6' CTC 1385 C 1 
HETATM 19 C C6A CTC . . . P 3 -31.084 -8.971 38.64 1 112.27 ? C6A CTC 1385 C 1 
HETATM 20 C C7 CTC . . . P 3 -30.997 -7.683 38.07 1 113.52 ? C7 CTC 1385 C 1 
HETATM 21 CL CL7 CTC . . . P 3 -32.355 -6.53 38.248 1 113.54 ? CL7 CTC 1385 C 1 
HETATM 22 C C8 CTC . . . P 3 -29.841 -7.296 37.375 1 113.68 ? C8 CTC 1385 C 1 
HETATM 23 C C9 CTC . . . P 3 -28.779 -8.198 37.235 1 113.9 ? C9 CTC 1385 C 1 
HETATM 24 C C10 CTC . . . P 3 -28.854 -9.487 37.789 1 113.42 ? C10 CTC 1385 C 1 
HETATM 25 O O10 CTC . . . P 3 -27.806 -10.309 37.633 1 113.66 ? O10 CTC 1385 C 1 
HETATM 26 C C6B CTC . . . P 3 -30.016 -9.882 38.493 1 112.25 ? C6B CTC 1385 C 1 
HETATM 27 C C11 CTC . . . P 3 -30.132 -11.207 39.099 1 111.08 ? C11 CTC 1385 C 1 
HETATM 28 O O11 CTC . . . P 3 -29.356 -12.155 38.66 1 111.4 ? O11 CTC 1385 C 1 
HETATM 29 C C5B CTC . . . P 3 -31.095 -11.427 40.136 1 109.79 ? C5B CTC 1385 C 1 
HETATM 30 C C12 CTC . . . P 3 -31.25 -12.716 40.733 1 108.66 ? C12 CTC 1385 C 1 
HETATM 31 O O12 CTC . . . P 3 -30.517 -13.752 40.345 1 108.88 ? O12 CTC 1385 C 1 
HETATM 32 C C4B CTC . . . P 3 -32.281 -13.006 41.84 1 107.7 ? C4B CTC 1385 C 1 
HETATM 33 O O4B CTC . . . P 3 -31.603 -13.668 42.92 1 107.3 ? O4B CTC 1385 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#