data_2Y6Z # _model_server_result.job_id CEXyxgC4vdnbUdv6uUNDZQ _model_server_result.datetime_utc '2024-10-19 12:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1266}' # _entry.id 2Y6Z # _exptl.entry_id 2Y6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIAMIN PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Y6Z _cell.length_a 126.3 _cell.length_b 126.3 _cell.length_c 107.29 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 34 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 25 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 34 _struct_conn.ptnr2_symmetry 8_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.453 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H18 N4 O4 P S 1' _chem_comp.formula_weight 345.334 _chem_comp.id TPS _chem_comp.mon_nstd_flag . _chem_comp.name 'THIAMIN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM2 C2A TPS sing 316 n n CM2 HM21 TPS sing 317 n n CM2 HM22 TPS sing 318 n n CM2 HM23 TPS sing 319 n n N3 C2 TPS doub 320 n y N3 C4 TPS sing 321 n y N3 C7A TPS sing 322 n n C2 S1 TPS sing 323 n y C2 H2 TPS sing 324 n n S1 C5 TPS sing 325 n y C5 C4 TPS doub 326 n y C5 C6 TPS sing 327 n n C4 CM4 TPS sing 328 n n CM4 HM41 TPS sing 329 n n CM4 HM42 TPS sing 330 n n CM4 HM43 TPS sing 331 n n C6 C7 TPS sing 332 n n C6 H61 TPS sing 333 n n C6 H62 TPS sing 334 n n C7 O7 TPS sing 335 n n C7 H71 TPS sing 336 n n C7 H72 TPS sing 337 n n O7 P1 TPS sing 338 n n N1A C2A TPS doub 339 n y N1A C6A TPS sing 340 n y C2A N3A TPS sing 341 n y N3A C4A TPS doub 342 n y C4A N4A TPS sing 343 n n C4A C5A TPS sing 344 n y N4A H41N TPS sing 345 n n N4A H42N TPS sing 346 n n C5A C6A TPS doub 347 n y C5A C7A TPS sing 348 n n C6A H6A TPS sing 349 n n C7A H7A1 TPS sing 350 n n C7A H7A2 TPS sing 351 n n P1 O1 TPS doub 352 n n P1 O2 TPS sing 353 n n P1 O3 TPS sing 354 n n O2 HO2 TPS sing 355 n n O3 HO3 TPS sing 356 n n # _atom_sites.entry_id 2Y6Z _atom_sites.fract_transf_matrix[1][1] 0.007918 _atom_sites.fract_transf_matrix[1][2] 0.004571 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TPS A 1 1266 1266 TPS TPS . C 3 POP A 1 1267 1267 POP POP . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM2 TPS . . . B 2 52.277 -6.448 -1.248 1 133.23 ? CM2 TPS 1266 A 1 HETATM 2 N N3 TPS . . . B 2 58.177 -9.022 -0.698 1 101.71 ? N3 TPS 1266 A 1 HETATM 3 C C2 TPS . . . B 2 57.56 -9.224 -2.081 1 92.1 ? C2 TPS 1266 A 1 HETATM 4 S S1 TPS . . . B 2 58.817 -9.675 -3.09 1 177.67 ? S1 TPS 1266 A 1 HETATM 5 C C5 TPS . . . B 2 60.033 -10.307 -2.012 1 97.83 ? C5 TPS 1266 A 1 HETATM 6 C C4 TPS . . . B 2 59.558 -9.855 -0.607 1 115.83 ? C4 TPS 1266 A 1 HETATM 7 C CM4 TPS . . . B 2 60.009 -10.564 0.639 1 111.4 ? CM4 TPS 1266 A 1 HETATM 8 C C6 TPS . . . B 2 60.954 -11.542 -2.217 1 65.04 ? C6 TPS 1266 A 1 HETATM 9 C C7 TPS . . . B 2 62.505 -11.441 -2.041 1 75.78 ? C7 TPS 1266 A 1 HETATM 10 O O7 TPS . . . B 2 63.156 -11.013 -0.861 1 64.66 ? O7 TPS 1266 A 1 HETATM 11 N N1A TPS . . . B 2 54.782 -6.132 -0.734 1 126.25 ? N1A TPS 1266 A 1 HETATM 12 C C2A TPS . . . B 2 53.618 -7.023 -0.75 1 125.2 ? C2A TPS 1266 A 1 HETATM 13 N N3A TPS . . . B 2 53.731 -8.389 -0.355 1 115.41 ? N3A TPS 1266 A 1 HETATM 14 C C4A TPS . . . B 2 54.938 -8.865 0.035 1 109.52 ? C4A TPS 1266 A 1 HETATM 15 N N4A TPS . . . B 2 55.108 -10.256 0.441 1 91.04 ? N4A TPS 1266 A 1 HETATM 16 C C5A TPS . . . B 2 56.131 -7.922 0.046 1 112.88 ? C5A TPS 1266 A 1 HETATM 17 C C6A TPS . . . B 2 56.031 -6.618 -0.332 1 117.67 ? C6A TPS 1266 A 1 HETATM 18 C C7A TPS . . . B 2 57.504 -8.466 0.477 1 104.98 ? C7A TPS 1266 A 1 HETATM 19 P P1 TPS . . . B 2 64.798 -11.129 -0.927 1 49.98 ? P1 TPS 1266 A 1 HETATM 20 O O1 TPS . . . B 2 65.525 -9.648 -0.798 1 103.29 ? O1 TPS 1266 A 1 HETATM 21 O O2 TPS . . . B 2 65.29 -12.016 0.104 1 50.39 ? O2 TPS 1266 A 1 HETATM 22 O O3 TPS . . . B 2 65.123 -11.84 -2.37 1 50.65 ? O3 TPS 1266 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #