data_2Y6Z
#
_model_server_result.job_id            ZMFatFGIGW01h7C_a06-GQ 
_model_server_result.datetime_utc      '2024-12-26 13:39:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y6z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1266}' 
#
_entry.id    2Y6Z 
#
_exptl.entry_id    2Y6Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              345.334 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'THIAMIN PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2Y6Z 
_cell.length_a            126.3 
_cell.length_b            126.3 
_cell.length_c            107.29 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y6Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             25 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              34 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             25 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              34 
_struct_conn.ptnr2_symmetry                 8_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.453 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C12 H18 N4 O4 P S 1' 
_chem_comp.formula_weight    345.334 
_chem_comp.id                TPS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'THIAMIN PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM2 C2A TPS sing 316 n n 
CM2 HM21 TPS sing 317 n n 
CM2 HM22 TPS sing 318 n n 
CM2 HM23 TPS sing 319 n n 
N3 C2 TPS doub 320 n y 
N3 C4 TPS sing 321 n y 
N3 C7A TPS sing 322 n n 
C2 S1 TPS sing 323 n y 
C2 H2 TPS sing 324 n n 
S1 C5 TPS sing 325 n y 
C5 C4 TPS doub 326 n y 
C5 C6 TPS sing 327 n n 
C4 CM4 TPS sing 328 n n 
CM4 HM41 TPS sing 329 n n 
CM4 HM42 TPS sing 330 n n 
CM4 HM43 TPS sing 331 n n 
C6 C7 TPS sing 332 n n 
C6 H61 TPS sing 333 n n 
C6 H62 TPS sing 334 n n 
C7 O7 TPS sing 335 n n 
C7 H71 TPS sing 336 n n 
C7 H72 TPS sing 337 n n 
O7 P1 TPS sing 338 n n 
N1A C2A TPS doub 339 n y 
N1A C6A TPS sing 340 n y 
C2A N3A TPS sing 341 n y 
N3A C4A TPS doub 342 n y 
C4A N4A TPS sing 343 n n 
C4A C5A TPS sing 344 n y 
N4A H41N TPS sing 345 n n 
N4A H42N TPS sing 346 n n 
C5A C6A TPS doub 347 n y 
C5A C7A TPS sing 348 n n 
C6A H6A TPS sing 349 n n 
C7A H7A1 TPS sing 350 n n 
C7A H7A2 TPS sing 351 n n 
P1 O1 TPS doub 352 n n 
P1 O2 TPS sing 353 n n 
P1 O3 TPS sing 354 n n 
O2 HO2 TPS sing 355 n n 
O3 HO3 TPS sing 356 n n 
#
_atom_sites.entry_id                     2Y6Z 
_atom_sites.fract_transf_matrix[1][1]    0.007918 
_atom_sites.fract_transf_matrix[1][2]    0.004571 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TPS A 1 1266 1266 TPS TPS . 
C 3 POP A 1 1267 1267 POP POP . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
D 4 HOH A 56 2056 2056 HOH HOH . 
D 4 HOH A 57 2057 2057 HOH HOH . 
D 4 HOH A 58 2058 2058 HOH HOH . 
D 4 HOH A 59 2059 2059 HOH HOH . 
D 4 HOH A 60 2060 2060 HOH HOH . 
D 4 HOH A 61 2061 2061 HOH HOH . 
D 4 HOH A 62 2062 2062 HOH HOH . 
D 4 HOH A 63 2063 2063 HOH HOH . 
D 4 HOH A 64 2064 2064 HOH HOH . 
D 4 HOH A 65 2065 2065 HOH HOH . 
D 4 HOH A 66 2066 2066 HOH HOH . 
D 4 HOH A 67 2067 2067 HOH HOH . 
D 4 HOH A 68 2068 2068 HOH HOH . 
D 4 HOH A 69 2069 2069 HOH HOH . 
D 4 HOH A 70 2070 2070 HOH HOH . 
D 4 HOH A 71 2071 2071 HOH HOH . 
D 4 HOH A 72 2072 2072 HOH HOH . 
D 4 HOH A 73 2073 2073 HOH HOH . 
D 4 HOH A 74 2074 2074 HOH HOH . 
D 4 HOH A 75 2075 2075 HOH HOH . 
D 4 HOH A 76 2076 2076 HOH HOH . 
D 4 HOH A 77 2077 2077 HOH HOH . 
D 4 HOH A 78 2078 2078 HOH HOH . 
D 4 HOH A 79 2079 2079 HOH HOH . 
D 4 HOH A 80 2080 2080 HOH HOH . 
D 4 HOH A 81 2081 2081 HOH HOH . 
D 4 HOH A 82 2082 2082 HOH HOH . 
D 4 HOH A 83 2083 2083 HOH HOH . 
D 4 HOH A 84 2084 2084 HOH HOH . 
D 4 HOH A 85 2085 2085 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM2 TPS . . . B 2 52.277 -6.448 -1.248 1 133.23 ? CM2 TPS 1266 A 1 
HETATM 2 N N3 TPS . . . B 2 58.177 -9.022 -0.698 1 101.71 ? N3 TPS 1266 A 1 
HETATM 3 C C2 TPS . . . B 2 57.56 -9.224 -2.081 1 92.1 ? C2 TPS 1266 A 1 
HETATM 4 S S1 TPS . . . B 2 58.817 -9.675 -3.09 1 177.67 ? S1 TPS 1266 A 1 
HETATM 5 C C5 TPS . . . B 2 60.033 -10.307 -2.012 1 97.83 ? C5 TPS 1266 A 1 
HETATM 6 C C4 TPS . . . B 2 59.558 -9.855 -0.607 1 115.83 ? C4 TPS 1266 A 1 
HETATM 7 C CM4 TPS . . . B 2 60.009 -10.564 0.639 1 111.4 ? CM4 TPS 1266 A 1 
HETATM 8 C C6 TPS . . . B 2 60.954 -11.542 -2.217 1 65.04 ? C6 TPS 1266 A 1 
HETATM 9 C C7 TPS . . . B 2 62.505 -11.441 -2.041 1 75.78 ? C7 TPS 1266 A 1 
HETATM 10 O O7 TPS . . . B 2 63.156 -11.013 -0.861 1 64.66 ? O7 TPS 1266 A 1 
HETATM 11 N N1A TPS . . . B 2 54.782 -6.132 -0.734 1 126.25 ? N1A TPS 1266 A 1 
HETATM 12 C C2A TPS . . . B 2 53.618 -7.023 -0.75 1 125.2 ? C2A TPS 1266 A 1 
HETATM 13 N N3A TPS . . . B 2 53.731 -8.389 -0.355 1 115.41 ? N3A TPS 1266 A 1 
HETATM 14 C C4A TPS . . . B 2 54.938 -8.865 0.035 1 109.52 ? C4A TPS 1266 A 1 
HETATM 15 N N4A TPS . . . B 2 55.108 -10.256 0.441 1 91.04 ? N4A TPS 1266 A 1 
HETATM 16 C C5A TPS . . . B 2 56.131 -7.922 0.046 1 112.88 ? C5A TPS 1266 A 1 
HETATM 17 C C6A TPS . . . B 2 56.031 -6.618 -0.332 1 117.67 ? C6A TPS 1266 A 1 
HETATM 18 C C7A TPS . . . B 2 57.504 -8.466 0.477 1 104.98 ? C7A TPS 1266 A 1 
HETATM 19 P P1 TPS . . . B 2 64.798 -11.129 -0.927 1 49.98 ? P1 TPS 1266 A 1 
HETATM 20 O O1 TPS . . . B 2 65.525 -9.648 -0.798 1 103.29 ? O1 TPS 1266 A 1 
HETATM 21 O O2 TPS . . . B 2 65.29 -12.016 0.104 1 50.39 ? O2 TPS 1266 A 1 
HETATM 22 O O3 TPS . . . B 2 65.123 -11.84 -2.37 1 50.65 ? O3 TPS 1266 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           22 
#