data_2Y71 # _model_server_result.job_id hdZinI8z0CYbLo5rBsBQTw _model_server_result.datetime_utc '2025-08-01 09:12:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1144}' # _entry.id 2Y71 # _exptl.entry_id 2Y71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,4S,5R)-1,4,5-trihydroxy-3-[(5-methyl-1-benzothiophen-2-yl)methoxy]cyclohex-2-ene-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y71 _cell.length_a 126.65 _cell.length_b 126.65 _cell.length_c 126.65 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 24_544 -y,-z-1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 0 -63.325 -63.325 3 'crystal symmetry operation' 30_554 z+1/2,-x,-y-1/2 0 0 1 -1 0 0 0 -1 0 63.325 0 -63.325 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 6 A ASN 6 1_555 C NA NA . A NA 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc2 A OE1 GLU 70 A GLU 70 1_555 C NA NA . A NA 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc3 A O LEU 128 A LEU 128 1_555 D NA NA . A NA 1146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc4 C NA NA . A NA 1145 1_555 J O HOH . A HOH 2025 32_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc5 C NA NA . A NA 1145 1_555 J O HOH . A HOH 2044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc6 C NA NA . A NA 1145 1_555 J O HOH . A HOH 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc7 D NA NA . A NA 1146 1_555 J O HOH . A HOH 2123 16_544 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? # _chem_comp.formula 'C17 H18 O6 S' _chem_comp.formula_weight 350.386 _chem_comp.id CB6 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,4S,5R)-1,4,5-trihydroxy-3-[(5-methyl-1-benzothiophen-2-yl)methoxy]cyclohex-2-ene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAT CB6 sing 70 n y CAK CAS CB6 doub 71 n y CAT CAI CB6 sing 72 n y CAT CAU CB6 doub 73 n y CAI CAH CB6 doub 74 n y CAH CAR CB6 sing 75 n y CAH CAA CB6 sing 76 n n CAR CAJ CB6 doub 77 n y CAJ CAU CB6 sing 78 n y CAU SAO CB6 sing 79 n y SAO CAS CB6 sing 80 n y CAS CAL CB6 sing 81 n n CAL OAN CB6 sing 82 n n OAN CAQ CB6 sing 83 n n CAQ CAG CB6 doub 84 n n CAQ CAW CB6 sing 85 n n CAG CAX CB6 sing 86 n n CAX CAP CB6 sing 87 n n CAX OAF CB6 sing 88 n n CAX CAM CB6 sing 89 n n CAP OAC CB6 doub 90 n n CAP OAB CB6 sing 91 n n CAM CAV CB6 sing 92 n n CAV OAD CB6 sing 93 n n CAV CAW CB6 sing 94 n n CAW OAE CB6 sing 95 n n CAK HAK CB6 sing 96 n n CAI HAI CB6 sing 97 n n CAR HAR CB6 sing 98 n n CAA HAA1 CB6 sing 99 n n CAA HAA2 CB6 sing 100 n n CAA HAA3 CB6 sing 101 n n CAJ HAJ CB6 sing 102 n n CAL HAL1 CB6 sing 103 n n CAL HAL2 CB6 sing 104 n n CAG HAG CB6 sing 105 n n CAW HAW CB6 sing 106 n n OAF HAF CB6 sing 107 n n CAM HAM1 CB6 sing 108 n n CAM HAM2 CB6 sing 109 n n OAB HAB CB6 sing 110 n n CAV HAV CB6 sing 111 n n OAD HAD CB6 sing 112 n n OAE HAE CB6 sing 113 n n # _atom_sites.entry_id 2Y71 _atom_sites.fract_transf_matrix[1][1] 0.007896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CB6 A 1 1144 1144 CB6 CB6 . C 3 NA A 1 1145 1145 NA NA . D 3 NA A 1 1146 1146 NA NA . E 4 SO4 A 1 1147 1147 SO4 SO4 . F 4 SO4 A 1 1148 1148 SO4 SO4 . G 4 SO4 A 1 1149 1149 SO4 SO4 . H 4 SO4 A 1 1150 1150 SO4 SO4 . I 4 SO4 A 1 1151 1151 SO4 SO4 . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH A 8 2008 2008 HOH HOH . J 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH A 10 2010 2010 HOH HOH . J 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH A 12 2012 2012 HOH HOH . J 5 HOH A 13 2013 2013 HOH HOH . J 5 HOH A 14 2014 2014 HOH HOH . J 5 HOH A 15 2015 2015 HOH HOH . J 5 HOH A 16 2016 2016 HOH HOH . J 5 HOH A 17 2017 2017 HOH HOH . J 5 HOH A 18 2018 2018 HOH HOH . J 5 HOH A 19 2019 2019 HOH HOH . J 5 HOH A 20 2020 2020 HOH HOH . J 5 HOH A 21 2021 2021 HOH HOH . J 5 HOH A 22 2022 2022 HOH HOH . J 5 HOH A 23 2023 2023 HOH HOH . J 5 HOH A 24 2024 2024 HOH HOH . J 5 HOH A 25 2025 2025 HOH HOH . J 5 HOH A 26 2026 2026 HOH HOH . J 5 HOH A 27 2027 2027 HOH HOH . J 5 HOH A 28 2028 2028 HOH HOH . J 5 HOH A 29 2029 2029 HOH HOH . J 5 HOH A 30 2030 2030 HOH HOH . J 5 HOH A 31 2031 2031 HOH HOH . J 5 HOH A 32 2032 2032 HOH HOH . J 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH A 34 2034 2034 HOH HOH . J 5 HOH A 35 2035 2035 HOH HOH . J 5 HOH A 36 2036 2036 HOH HOH . J 5 HOH A 37 2037 2037 HOH HOH . J 5 HOH A 38 2038 2038 HOH HOH . J 5 HOH A 39 2039 2039 HOH HOH . J 5 HOH A 40 2040 2040 HOH HOH . J 5 HOH A 41 2041 2041 HOH HOH . J 5 HOH A 42 2042 2042 HOH HOH . J 5 HOH A 43 2043 2043 HOH HOH . J 5 HOH A 44 2044 2044 HOH HOH . J 5 HOH A 45 2045 2045 HOH HOH . J 5 HOH A 46 2046 2046 HOH HOH . J 5 HOH A 47 2047 2047 HOH HOH . J 5 HOH A 48 2048 2048 HOH HOH . J 5 HOH A 49 2049 2049 HOH HOH . J 5 HOH A 50 2050 2050 HOH HOH . J 5 HOH A 51 2051 2051 HOH HOH . J 5 HOH A 52 2052 2052 HOH HOH . J 5 HOH A 53 2053 2053 HOH HOH . J 5 HOH A 54 2054 2054 HOH HOH . J 5 HOH A 55 2055 2055 HOH HOH . J 5 HOH A 56 2056 2056 HOH HOH . J 5 HOH A 57 2057 2057 HOH HOH . J 5 HOH A 58 2058 2058 HOH HOH . J 5 HOH A 59 2059 2059 HOH HOH . J 5 HOH A 60 2060 2060 HOH HOH . J 5 HOH A 61 2061 2061 HOH HOH . J 5 HOH A 62 2062 2062 HOH HOH . J 5 HOH A 63 2063 2063 HOH HOH . J 5 HOH A 64 2064 2064 HOH HOH . J 5 HOH A 65 2065 2065 HOH HOH . J 5 HOH A 66 2066 2066 HOH HOH . J 5 HOH A 67 2067 2067 HOH HOH . J 5 HOH A 68 2068 2068 HOH HOH . J 5 HOH A 69 2069 2069 HOH HOH . J 5 HOH A 70 2070 2070 HOH HOH . J 5 HOH A 71 2071 2071 HOH HOH . J 5 HOH A 72 2072 2072 HOH HOH . J 5 HOH A 73 2073 2073 HOH HOH . J 5 HOH A 74 2074 2074 HOH HOH . J 5 HOH A 75 2075 2075 HOH HOH . J 5 HOH A 76 2076 2076 HOH HOH . J 5 HOH A 77 2077 2077 HOH HOH . J 5 HOH A 78 2078 2078 HOH HOH . J 5 HOH A 79 2079 2079 HOH HOH . J 5 HOH A 80 2080 2080 HOH HOH . J 5 HOH A 81 2081 2081 HOH HOH . J 5 HOH A 82 2082 2082 HOH HOH . J 5 HOH A 83 2083 2083 HOH HOH . J 5 HOH A 84 2084 2084 HOH HOH . J 5 HOH A 85 2085 2085 HOH HOH . J 5 HOH A 86 2086 2086 HOH HOH . J 5 HOH A 87 2087 2087 HOH HOH . J 5 HOH A 88 2088 2088 HOH HOH . J 5 HOH A 89 2089 2089 HOH HOH . J 5 HOH A 90 2090 2090 HOH HOH . J 5 HOH A 91 2091 2091 HOH HOH . J 5 HOH A 92 2092 2092 HOH HOH . J 5 HOH A 93 2093 2093 HOH HOH . J 5 HOH A 94 2094 2094 HOH HOH . J 5 HOH A 95 2095 2095 HOH HOH . J 5 HOH A 96 2096 2096 HOH HOH . J 5 HOH A 97 2097 2097 HOH HOH . J 5 HOH A 98 2098 2098 HOH HOH . J 5 HOH A 99 2099 2099 HOH HOH . J 5 HOH A 100 2100 2100 HOH HOH . J 5 HOH A 101 2101 2101 HOH HOH . J 5 HOH A 102 2102 2102 HOH HOH . J 5 HOH A 103 2103 2103 HOH HOH . J 5 HOH A 104 2104 2104 HOH HOH . J 5 HOH A 105 2105 2105 HOH HOH . J 5 HOH A 106 2106 2106 HOH HOH . J 5 HOH A 107 2107 2107 HOH HOH . J 5 HOH A 108 2108 2108 HOH HOH . J 5 HOH A 109 2109 2109 HOH HOH . J 5 HOH A 110 2110 2110 HOH HOH . J 5 HOH A 111 2111 2111 HOH HOH . J 5 HOH A 112 2112 2112 HOH HOH . J 5 HOH A 113 2113 2113 HOH HOH . J 5 HOH A 114 2114 2114 HOH HOH . J 5 HOH A 115 2115 2115 HOH HOH . J 5 HOH A 116 2116 2116 HOH HOH . J 5 HOH A 117 2117 2117 HOH HOH . J 5 HOH A 118 2118 2118 HOH HOH . J 5 HOH A 119 2119 2119 HOH HOH . J 5 HOH A 120 2120 2120 HOH HOH . J 5 HOH A 121 2121 2121 HOH HOH . J 5 HOH A 122 2122 2122 HOH HOH . J 5 HOH A 123 2123 2123 HOH HOH . J 5 HOH A 124 2124 2124 HOH HOH . J 5 HOH A 125 2125 2125 HOH HOH . J 5 HOH A 126 2126 2126 HOH HOH . J 5 HOH A 127 2127 2127 HOH HOH . J 5 HOH A 128 2128 2128 HOH HOH . J 5 HOH A 129 2129 2129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK CB6 . . . B 2 5.651 -29.087 -49.414 1 22.7 ? CAK CB6 1144 A 1 HETATM 2 C CAT CB6 . . . B 2 5.939 -29.549 -50.651 1 24.59 ? CAT CB6 1144 A 1 HETATM 3 C CAI CB6 . . . B 2 5.109 -29.977 -51.687 1 27.54 ? CAI CB6 1144 A 1 HETATM 4 C CAH CB6 . . . B 2 5.651 -30.412 -52.903 1 28.08 ? CAH CB6 1144 A 1 HETATM 5 C CAR CB6 . . . B 2 7.034 -30.437 -53.091 1 28.9 ? CAR CB6 1144 A 1 HETATM 6 C CAJ CB6 . . . B 2 7.855 -30.022 -52.078 1 27.09 ? CAJ CB6 1144 A 1 HETATM 7 C CAU CB6 . . . B 2 7.312 -29.594 -50.894 1 24.78 ? CAU CB6 1144 A 1 HETATM 8 S SAO CB6 . . . B 2 8.099 -29.076 -49.536 1 23.88 ? SAO CB6 1144 A 1 HETATM 9 C CAS CB6 . . . B 2 6.709 -28.763 -48.665 1 21.56 ? CAS CB6 1144 A 1 HETATM 10 C CAL CB6 . . . B 2 6.742 -28.285 -47.339 1 22.93 ? CAL CB6 1144 A 1 HETATM 11 O OAN CB6 . . . B 2 8.096 -27.967 -46.689 1 22.8 ? OAN CB6 1144 A 1 HETATM 12 C CAQ CB6 . . . B 2 8.225 -28.398 -45.414 1 17.69 ? CAQ CB6 1144 A 1 HETATM 13 C CAG CB6 . . . B 2 7.111 -28.596 -44.601 1 18.28 ? CAG CB6 1144 A 1 HETATM 14 C CAX CB6 . . . B 2 7.231 -29.066 -43.28 1 18.4 ? CAX CB6 1144 A 1 HETATM 15 C CAP CB6 . . . B 2 6.057 -29.996 -42.933 1 16.18 ? CAP CB6 1144 A 1 HETATM 16 O OAC CB6 . . . B 2 6.227 -31.203 -42.61 1 14.65 ? OAC CB6 1144 A 1 HETATM 17 O OAB CB6 . . . B 2 4.945 -29.443 -42.965 1 13.94 ? OAB CB6 1144 A 1 HETATM 18 O OAF CB6 . . . B 2 7.108 -27.879 -42.41 1 22.35 ? OAF CB6 1144 A 1 HETATM 19 C CAM CB6 . . . B 2 8.58 -29.749 -42.966 1 17.33 ? CAM CB6 1144 A 1 HETATM 20 C CAV CB6 . . . B 2 9.732 -28.876 -43.453 1 15.59 ? CAV CB6 1144 A 1 HETATM 21 O OAD CB6 . . . B 2 10.957 -29.526 -43.094 1 16.39 ? OAD CB6 1144 A 1 HETATM 22 C CAW CB6 . . . B 2 9.634 -28.802 -44.964 1 16.37 ? CAW CB6 1144 A 1 HETATM 23 O OAE CB6 . . . B 2 10.589 -27.868 -45.553 1 20.78 ? OAE CB6 1144 A 1 HETATM 24 C CAA CB6 . . . B 2 4.777 -30.884 -54.084 1 30.85 ? CAA CB6 1144 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #