data_2Y76
#
_model_server_result.job_id            M805ydvDg_OVO9mUeWvmYg 
_model_server_result.datetime_utc      '2025-01-18 11:16:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1144}' 
#
_entry.id    2Y76 
#
_exptl.entry_id    2Y76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              482.569 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,4S,5R)-3-(BENZO[b]THIOPHEN-5-YL)METHOXY-2-(BENZO[b]THIOPHEN-5-YL)METHYL-1,4,5-TRIHYDROXYCYCLOHEX-2-ENE-1-CARBOXYLATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Y76 
_cell.length_a            126.43 
_cell.length_b            126.43 
_cell.length_c            126.43 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        196 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'F 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
3 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H22 O6 S2' 
_chem_comp.formula_weight    482.569 
_chem_comp.id                CB7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,4S,5R)-3-(BENZO[b]THIOPHEN-5-YL)METHOXY-2-(BENZO[b]THIOPHEN-5-YL)METHYL-1,4,5-TRIHYDROXYCYCLOHEX-2-ENE-1-CARBOXYLATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAO CBB CB7 sing 70 n y 
CAO CAZ CB7 doub 71 n y 
CBB CAK CB7 sing 72 n y 
CBB CBD CB7 doub 73 n y 
CAK CAG CB7 doub 74 n y 
CAG SAU CB7 sing 75 n y 
SAU CBD CB7 sing 76 n y 
CBD CAM CB7 sing 77 n y 
CAM CAI CB7 doub 78 n y 
CAI CAZ CB7 sing 79 n y 
CAZ CAQ CB7 sing 80 n n 
CAQ CAW CB7 sing 81 n n 
CAW CBG CB7 sing 82 n n 
CAW CAX CB7 doub 83 n n 
CBG CAV CB7 sing 84 n n 
CBG OAE CB7 sing 85 n n 
CBG CAR CB7 sing 86 n n 
CAV OAB CB7 doub 87 n n 
CAV OAA CB7 sing 88 n n 
CAR CBE CB7 sing 89 n n 
CBE OAC CB7 sing 90 n n 
CBE CBF CB7 sing 91 n n 
CBF OAD CB7 sing 92 n n 
CBF CAX CB7 sing 93 n n 
CAX OAS CB7 sing 94 n n 
OAS CAP CB7 sing 95 n n 
CAP CAY CB7 sing 96 n n 
CAY CAN CB7 sing 97 n y 
CAY CAH CB7 doub 98 n y 
CAN CBA CB7 doub 99 n y 
CBA CAJ CB7 sing 100 n y 
CBA CBC CB7 sing 101 n y 
CAJ CAF CB7 doub 102 n y 
CAF SAT CB7 sing 103 n y 
SAT CBC CB7 sing 104 n y 
CBC CAL CB7 doub 105 n y 
CAL CAH CB7 sing 106 n y 
CAO HAO CB7 sing 107 n n 
CAK HAK CB7 sing 108 n n 
CAG HAG CB7 sing 109 n n 
CAM HAM CB7 sing 110 n n 
CAI HAI CB7 sing 111 n n 
CAQ HAQ1 CB7 sing 112 n n 
CAQ HAQ2 CB7 sing 113 n n 
OAE HAE CB7 sing 114 n n 
CAR HAR1 CB7 sing 115 n n 
CAR HAR2 CB7 sing 116 n n 
OAA HAA CB7 sing 117 n n 
CBE HBE CB7 sing 118 n n 
OAC HAC CB7 sing 119 n n 
CBF HBF CB7 sing 120 n n 
OAD HAD CB7 sing 121 n n 
CAP HAP1 CB7 sing 122 n n 
CAP HAP2 CB7 sing 123 n n 
CAN HAN CB7 sing 124 n n 
CAH HAH CB7 sing 125 n n 
CAJ HAJ CB7 sing 126 n n 
CAF HAF CB7 sing 127 n n 
CAL HAL CB7 sing 128 n n 
#
_atom_sites.entry_id                     2Y76 
_atom_sites.fract_transf_matrix[1][1]    0.00791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00791 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00791 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CB7 A 1 1144 1144 CB7 CB7 . 
C 3 SO4 A 1 1145 1145 SO4 SO4 . 
D 3 SO4 A 1 1146 1146 SO4 SO4 . 
E 3 SO4 A 1 1147 1147 SO4 SO4 . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
F 4 HOH A 29 2029 2029 HOH HOH . 
F 4 HOH A 30 2030 2030 HOH HOH . 
F 4 HOH A 31 2031 2031 HOH HOH . 
F 4 HOH A 32 2032 2032 HOH HOH . 
F 4 HOH A 33 2033 2033 HOH HOH . 
F 4 HOH A 34 2034 2034 HOH HOH . 
F 4 HOH A 35 2035 2035 HOH HOH . 
F 4 HOH A 36 2036 2036 HOH HOH . 
F 4 HOH A 37 2037 2037 HOH HOH . 
F 4 HOH A 38 2038 2038 HOH HOH . 
F 4 HOH A 39 2039 2039 HOH HOH . 
F 4 HOH A 40 2040 2040 HOH HOH . 
F 4 HOH A 41 2041 2041 HOH HOH . 
F 4 HOH A 42 2042 2042 HOH HOH . 
F 4 HOH A 43 2043 2043 HOH HOH . 
F 4 HOH A 44 2044 2044 HOH HOH . 
F 4 HOH A 45 2045 2045 HOH HOH . 
F 4 HOH A 46 2046 2046 HOH HOH . 
F 4 HOH A 47 2047 2047 HOH HOH . 
F 4 HOH A 48 2048 2048 HOH HOH . 
F 4 HOH A 49 2049 2049 HOH HOH . 
F 4 HOH A 50 2050 2050 HOH HOH . 
F 4 HOH A 51 2051 2051 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAO CB7 . . . B 2 5.169 15.248 28.897 1 25.62 ? CAO CB7 1144 A 1 
HETATM 2 C CBB CB7 . . . B 2 4.651 14.343 29.824 1 27.71 ? CBB CB7 1144 A 1 
HETATM 3 C CAK CB7 . . . B 2 4.446 13.015 29.68 1 28.29 ? CAK CB7 1144 A 1 
HETATM 4 C CAG CB7 . . . B 2 3.926 12.347 30.72 1 27.85 ? CAG CB7 1144 A 1 
HETATM 5 S SAU CB7 . . . B 2 3.659 13.477 31.944 1 29.64 ? SAU CB7 1144 A 1 
HETATM 6 C CBD CB7 . . . B 2 4.25 14.822 31.088 1 28.58 ? CBD CB7 1144 A 1 
HETATM 7 C CAM CB7 . . . B 2 4.384 16.169 31.42 1 27.67 ? CAM CB7 1144 A 1 
HETATM 8 C CAI CB7 . . . B 2 4.906 17.058 30.477 1 26.73 ? CAI CB7 1144 A 1 
HETATM 9 C CAZ CB7 . . . B 2 5.314 16.597 29.22 1 25.23 ? CAZ CB7 1144 A 1 
HETATM 10 C CAQ CB7 . . . B 2 5.873 17.565 28.172 1 23.94 ? CAQ CB7 1144 A 1 
HETATM 11 C CAW CB7 . . . B 2 7.17 18.248 28.573 1 23.09 ? CAW CB7 1144 A 1 
HETATM 12 C CBG CB7 . . . B 2 7.102 19.727 29.002 1 20.67 ? CBG CB7 1144 A 1 
HETATM 13 C CAV CB7 . . . B 2 5.877 20.085 29.847 1 17.08 ? CAV CB7 1144 A 1 
HETATM 14 O OAB CB7 . . . B 2 6.014 20.124 31.087 1 13.1 ? OAB CB7 1144 A 1 
HETATM 15 O OAA CB7 . . . B 2 4.847 20.39 29.211 1 14.67 ? OAA CB7 1144 A 1 
HETATM 16 O OAE CB7 . . . B 2 7.008 20.483 27.781 1 23.42 ? OAE CB7 1144 A 1 
HETATM 17 C CAR CB7 . . . B 2 8.361 20.134 29.778 1 19.52 ? CAR CB7 1144 A 1 
HETATM 18 C CBE CB7 . . . B 2 9.574 19.826 28.909 1 20.19 ? CBE CB7 1144 A 1 
HETATM 19 O OAC CB7 . . . B 2 10.739 20.392 29.522 1 19.15 ? OAC CB7 1144 A 1 
HETATM 20 C CBF CB7 . . . B 2 9.739 18.303 28.753 1 22.01 ? CBF CB7 1144 A 1 
HETATM 21 O OAD CB7 . . . B 2 10.604 17.959 27.663 1 18.66 ? OAD CB7 1144 A 1 
HETATM 22 C CAX CB7 . . . B 2 8.414 17.637 28.428 1 25.23 ? CAX CB7 1144 A 1 
HETATM 23 O OAS CB7 . . . B 2 8.52 16.354 28.044 1 32.61 ? OAS CB7 1144 A 1 
HETATM 24 C CAP CB7 . A . B 2 8.67 15.633 29.345 0.5 36.06 ? CAP CB7 1144 A 1 
HETATM 25 C CAP CB7 . B . B 2 7.956 15.391 28.968 0.5 35.85 ? CAP CB7 1144 A 1 
HETATM 26 C CAY CB7 . A . B 2 8.297 14.292 29.551 0.5 39.24 ? CAY CB7 1144 A 1 
HETATM 27 C CAY CB7 . B . B 2 8.542 14.941 30.158 0.5 38.65 ? CAY CB7 1144 A 1 
HETATM 28 C CAN CB7 . A . B 2 8.445 13.659 30.785 0.5 40.64 ? CAN CB7 1144 A 1 
HETATM 29 C CAN CB7 . B . B 2 8.751 13.569 30.337 0.5 40.01 ? CAN CB7 1144 A 1 
HETATM 30 C CBA CB7 . A . B 2 8.072 12.325 30.973 0.5 41.07 ? CBA CB7 1144 A 1 
HETATM 31 C CBA CB7 . B . B 2 9.322 13.058 31.505 0.5 41.09 ? CBA CB7 1144 A 1 
HETATM 32 C CAJ CB7 . A . B 2 8.147 11.56 32.087 0.5 41.8 ? CAJ CB7 1144 A 1 
HETATM 33 C CAJ CB7 . B . B 2 9.599 11.772 31.831 0.5 41.04 ? CAJ CB7 1144 A 1 
HETATM 34 C CAF CB7 . A . B 2 7.709 10.299 31.984 0.5 41.66 ? CAF CB7 1144 A 1 
HETATM 35 C CAF CB7 . B . B 2 10.146 11.567 33.04 0.5 41.43 ? CAF CB7 1144 A 1 
HETATM 36 S SAT CB7 . A . B 2 7.187 10.118 30.384 0.5 41.95 ? SAT CB7 1144 A 1 
HETATM 37 S SAT CB7 . B . B 2 10.311 13.083 33.777 0.5 41.68 ? SAT CB7 1144 A 1 
HETATM 38 C CBC CB7 . A . B 2 7.542 11.642 29.882 0.5 40.78 ? CBC CB7 1144 A 1 
HETATM 39 C CBC CB7 . B . B 2 9.665 13.978 32.505 0.5 40.58 ? CBC CB7 1144 A 1 
HETATM 40 C CAL CB7 . A . B 2 7.384 12.261 28.669 0.5 40.38 ? CAL CB7 1144 A 1 
HETATM 41 C CAL CB7 . B . B 2 9.439 15.337 32.327 0.5 39.53 ? CAL CB7 1144 A 1 
HETATM 42 C CAH CB7 . A . B 2 7.762 13.58 28.503 0.5 39.91 ? CAH CB7 1144 A 1 
HETATM 43 C CAH CB7 . B . B 2 8.877 15.836 31.166 0.5 38.44 ? CAH CB7 1144 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#