data_2Y7B # _model_server_result.job_id o_BvTpfHTEzPIuegbzexUg _model_server_result.datetime_utc '2024-11-05 00:55:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 2Y7B # _exptl.entry_id 2Y7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y7B _cell.length_a 34.3 _cell.length_b 59.417 _cell.length_c 64.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 97 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1076 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 102 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 1081 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.072 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2Y7B _atom_sites.fract_transf_matrix[1][1] 0.029155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2000 2000 EDO EDO . C 2 EDO A 1 2001 2001 EDO EDO . D 2 EDO A 1 2002 2002 EDO EDO . E 2 EDO A 1 2004 2004 EDO EDO . F 2 EDO A 1 2005 2005 EDO EDO . G 3 HOH A 1 3001 3001 HOH HOH . G 3 HOH A 2 3002 3002 HOH HOH . G 3 HOH A 3 3003 3003 HOH HOH . G 3 HOH A 4 3004 3004 HOH HOH . G 3 HOH A 5 3005 3005 HOH HOH . G 3 HOH A 6 3006 3006 HOH HOH . G 3 HOH A 7 3007 3007 HOH HOH . G 3 HOH A 8 3008 3008 HOH HOH . G 3 HOH A 9 3009 3009 HOH HOH . G 3 HOH A 10 3010 3010 HOH HOH . G 3 HOH A 11 3011 3011 HOH HOH . G 3 HOH A 12 3012 3012 HOH HOH . G 3 HOH A 13 3013 3013 HOH HOH . G 3 HOH A 14 3014 3014 HOH HOH . G 3 HOH A 15 3015 3015 HOH HOH . G 3 HOH A 16 3016 3016 HOH HOH . G 3 HOH A 17 3017 3017 HOH HOH . G 3 HOH A 18 3018 3018 HOH HOH . G 3 HOH A 19 3019 3019 HOH HOH . G 3 HOH A 20 3020 3020 HOH HOH . G 3 HOH A 21 3021 3021 HOH HOH . G 3 HOH A 22 3022 3022 HOH HOH . G 3 HOH A 23 3023 3023 HOH HOH . G 3 HOH A 24 3024 3024 HOH HOH . G 3 HOH A 25 3025 3025 HOH HOH . G 3 HOH A 26 3026 3026 HOH HOH . G 3 HOH A 27 3027 3027 HOH HOH . G 3 HOH A 28 3028 3028 HOH HOH . G 3 HOH A 29 3029 3029 HOH HOH . G 3 HOH A 30 3030 3030 HOH HOH . G 3 HOH A 31 3031 3031 HOH HOH . G 3 HOH A 32 3032 3032 HOH HOH . G 3 HOH A 33 3033 3033 HOH HOH . G 3 HOH A 34 3034 3034 HOH HOH . G 3 HOH A 35 3035 3035 HOH HOH . G 3 HOH A 36 3036 3036 HOH HOH . G 3 HOH A 37 3037 3037 HOH HOH . G 3 HOH A 38 3038 3038 HOH HOH . G 3 HOH A 39 3039 3039 HOH HOH . G 3 HOH A 40 3040 3040 HOH HOH . G 3 HOH A 41 3041 3041 HOH HOH . G 3 HOH A 42 3042 3042 HOH HOH . G 3 HOH A 43 3043 3043 HOH HOH . G 3 HOH A 44 3044 3044 HOH HOH . G 3 HOH A 45 3045 3045 HOH HOH . G 3 HOH A 46 3046 3046 HOH HOH . G 3 HOH A 47 3047 3047 HOH HOH . G 3 HOH A 48 3048 3048 HOH HOH . G 3 HOH A 49 3049 3049 HOH HOH . G 3 HOH A 50 3050 3050 HOH HOH . G 3 HOH A 51 3051 3051 HOH HOH . G 3 HOH A 52 3052 3052 HOH HOH . G 3 HOH A 53 3053 3053 HOH HOH . G 3 HOH A 54 3054 3054 HOH HOH . G 3 HOH A 55 3055 3055 HOH HOH . G 3 HOH A 56 3056 3056 HOH HOH . G 3 HOH A 57 3057 3057 HOH HOH . G 3 HOH A 58 3058 3058 HOH HOH . G 3 HOH A 59 3059 3059 HOH HOH . G 3 HOH A 60 3060 3060 HOH HOH . G 3 HOH A 61 3061 3061 HOH HOH . G 3 HOH A 62 3062 3062 HOH HOH . G 3 HOH A 63 3063 3063 HOH HOH . G 3 HOH A 64 3064 3064 HOH HOH . G 3 HOH A 65 3065 3065 HOH HOH . G 3 HOH A 66 3066 3066 HOH HOH . G 3 HOH A 67 3067 3067 HOH HOH . G 3 HOH A 68 3068 3068 HOH HOH . G 3 HOH A 69 3069 3069 HOH HOH . G 3 HOH A 70 3070 3070 HOH HOH . G 3 HOH A 71 3071 3071 HOH HOH . G 3 HOH A 72 3072 3072 HOH HOH . G 3 HOH A 73 3073 3073 HOH HOH . G 3 HOH A 74 3074 3074 HOH HOH . G 3 HOH A 75 3075 3075 HOH HOH . G 3 HOH A 76 3076 3076 HOH HOH . G 3 HOH A 77 3077 3077 HOH HOH . G 3 HOH A 78 3078 3078 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -5.55 -12.049 35.684 1 38.13 ? C1 EDO 2002 A 1 HETATM 2 O O1 EDO . . . D 2 -4.184 -11.924 35.236 1 38.9 ? O1 EDO 2002 A 1 HETATM 3 C C2 EDO . . . D 2 -6.139 -10.665 35.965 1 38.99 ? C2 EDO 2002 A 1 HETATM 4 O O2 EDO . . . D 2 -7.487 -10.576 35.497 1 46.96 ? O2 EDO 2002 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #