data_2Y9X # _model_server_result.job_id K571X8OULoyi7gnWk-YbSA _model_server_result.datetime_utc '2024-11-28 11:45:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":410}' # _entry.id 2Y9X # _exptl.entry_id 2Y9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-ONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.45 _cell.angle_gamma 90 _cell.entry_id 2Y9X _cell.length_a 103.84 _cell.length_b 104.82 _cell.length_c 119.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,Y,CA 1 1 B,F,M,N,O,P,Z,DA 2 1 C,G,Q,R,S,T,AA,EA 3 1 D,H,U,V,W,X,BA,FA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 P N N ? 5 T N N ? 5 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 60 A HIS 61 1_555 I CU CU . A CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 A NE2 HIS 84 A HIS 85 1_555 I CU CU . A CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc3 A NE2 HIS 93 A HIS 94 1_555 I CU CU . A CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc4 A NE2 HIS 258 A HIS 259 1_555 J CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 A NE2 HIS 262 A HIS 263 1_555 J CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 A NE2 HIS 295 A HIS 296 1_555 J CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc7 A OD1 ASP 311 A ASP 312 1_555 O HO HO . B HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc8 A OD1 ASP 335 A ASP 336 1_555 K HO HO . A HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc9 A OE1 GLN 350 A GLN 351 1_555 K HO HO . A HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc10 A OD2 ASP 352 A ASP 353 1_555 K HO HO . A HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc11 K HO HO . A HO 402 1_555 B OD1 ASP 311 B ASP 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.276 ? metalc ? metalc12 B NE2 HIS 60 B HIS 61 1_555 M CU CU . B CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc13 B NE2 HIS 84 B HIS 85 1_555 M CU CU . B CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc14 B NE2 HIS 93 B HIS 94 1_555 M CU CU . B CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc15 B NE2 HIS 258 B HIS 259 1_555 N CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc16 B NE2 HIS 262 B HIS 263 1_555 N CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc17 B NE2 HIS 295 B HIS 296 1_555 N CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc18 B OD2 ASP 335 B ASP 336 1_555 O HO HO . B HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc19 B OE1 GLN 350 B GLN 351 1_555 O HO HO . B HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc20 B OD2 ASP 352 B ASP 353 1_555 O HO HO . B HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc21 O HO HO . B HO 402 1_555 Z O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.494 ? metalc ? metalc22 C NE2 HIS 60 C HIS 61 1_555 Q CU CU . C CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc23 C NE2 HIS 84 C HIS 85 1_555 Q CU CU . C CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc24 C NE2 HIS 93 C HIS 94 1_555 Q CU CU . C CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc25 C NE2 HIS 258 C HIS 259 1_555 R CU CU . C CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc26 C NE2 HIS 262 C HIS 263 1_555 R CU CU . C CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc27 C NE2 HIS 295 C HIS 296 1_555 R CU CU . C CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc28 C OD1 ASP 311 C ASP 312 1_555 W HO HO . D HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc29 C OD1 ASP 335 C ASP 336 1_555 S HO HO . C HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc30 C OE1 GLN 350 C GLN 351 1_555 S HO HO . C HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc31 C OD2 ASP 352 C ASP 353 1_555 S HO HO . C HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc32 S HO HO . C HO 402 1_555 AA O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc33 S HO HO . C HO 402 1_555 D OD1 ASP 311 D ASP 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc34 D NE2 HIS 60 D HIS 61 1_555 U CU CU . D CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc35 D NE2 HIS 84 D HIS 85 1_555 U CU CU . D CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc36 D NE2 HIS 93 D HIS 94 1_555 U CU CU . D CU 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc37 D NE2 HIS 258 D HIS 259 1_555 V CU CU . D CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc38 D NE2 HIS 262 D HIS 263 1_555 V CU CU . D CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc39 D NE2 HIS 295 D HIS 296 1_555 V CU CU . D CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc40 D OD1 ASP 335 D ASP 336 1_555 W HO HO . D HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc41 D OE1 GLN 350 D GLN 351 1_555 W HO HO . D HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.232 ? metalc ? metalc42 D OD2 ASP 352 D ASP 353 1_555 W HO HO . D HO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc43 W HO HO . D HO 402 1_555 BA O HOH . D HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id 0TR _chem_comp.mon_nstd_flag . _chem_comp.name 2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TROPOLONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 OA1 0TR doub 1 n n CA1 CA2 0TR sing 2 n n CA1 CA6 0TR sing 3 n n CA2 OA2 0TR sing 4 n n CA2 CA3 0TR doub 5 n n CA3 CB3 0TR sing 6 n n CB3 CAE 0TR doub 7 n n CA5 CA6 0TR doub 8 n n CA5 CAE 0TR sing 9 n n CA6 HA6 0TR sing 10 n n OA2 HA2 0TR sing 11 n n CAE HAE 0TR sing 12 n n CA5 HA5 0TR sing 13 n n CA3 HA3 0TR sing 14 n n CB3 HB3 0TR sing 15 n n # _atom_sites.entry_id 2Y9X _atom_sites.fract_transf_matrix[1][1] 0.00963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003591 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CU A 1 400 400 CU CU . J 3 CU A 1 401 401 CU CU . K 4 HO A 1 402 402 HO HO . L 5 0TR A 1 410 410 0TR 0TR . M 3 CU B 1 400 400 CU CU . N 3 CU B 1 401 401 CU CU . O 4 HO B 1 402 402 HO HO . P 5 0TR B 1 410 410 0TR 0TR . Q 3 CU C 1 400 400 CU CU . R 3 CU C 1 401 401 CU CU . S 4 HO C 1 402 402 HO HO . T 5 0TR C 1 410 410 0TR 0TR . U 3 CU D 1 400 400 CU CU . V 3 CU D 1 401 401 CU CU . W 4 HO D 1 402 402 HO HO . X 5 0TR D 1 410 410 0TR 0TR . Y 6 HOH A 1 2001 2001 HOH HOH . Y 6 HOH A 2 2002 2002 HOH HOH . Y 6 HOH A 3 2003 2003 HOH HOH . Y 6 HOH A 4 2004 2004 HOH HOH . Z 6 HOH B 1 2001 2001 HOH HOH . Z 6 HOH B 2 2002 2002 HOH HOH . Z 6 HOH B 3 2003 2003 HOH HOH . Z 6 HOH B 4 2004 2004 HOH HOH . Z 6 HOH B 5 2005 2005 HOH HOH . Z 6 HOH B 6 2006 2006 HOH HOH . AA 6 HOH C 1 2001 2001 HOH HOH . AA 6 HOH C 2 2002 2002 HOH HOH . AA 6 HOH C 3 2003 2003 HOH HOH . AA 6 HOH C 4 2004 2004 HOH HOH . BA 6 HOH D 1 2001 2001 HOH HOH . BA 6 HOH D 2 2002 2002 HOH HOH . BA 6 HOH D 3 2003 2003 HOH HOH . BA 6 HOH D 4 2004 2004 HOH HOH . BA 6 HOH D 5 2005 2005 HOH HOH . CA 6 HOH E 1 2001 2001 HOH HOH . DA 6 HOH F 1 2001 2001 HOH HOH . EA 6 HOH G 1 2001 2001 HOH HOH . EA 6 HOH G 2 2002 2002 HOH HOH . EA 6 HOH G 3 2003 2003 HOH HOH . FA 6 HOH H 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 0TR . . . L 5 -10.264 -29.165 -42.511 1 82.77 ? CA1 0TR 410 A 1 HETATM 2 O OA1 0TR . . . L 5 -10.474 -29.204 -41.269 1 82.71 ? OA1 0TR 410 A 1 HETATM 3 C CA2 0TR . . . L 5 -9.923 -27.857 -43.059 1 82.84 ? CA2 0TR 410 A 1 HETATM 4 O OA2 0TR . . . L 5 -9.877 -26.859 -42.174 1 82.77 ? OA2 0TR 410 A 1 HETATM 5 C CA3 0TR . . . L 5 -9.642 -27.519 -44.374 1 82.93 ? CA3 0TR 410 A 1 HETATM 6 C CB3 0TR . . . L 5 -9.613 -28.29 -45.466 1 83.1 ? CB3 0TR 410 A 1 HETATM 7 C CA5 0TR . . . L 5 -10.188 -30.553 -44.62 1 82.8 ? CA5 0TR 410 A 1 HETATM 8 C CA6 0TR . . . L 5 -10.367 -30.351 -43.275 1 82.76 ? CA6 0TR 410 A 1 HETATM 9 C CAE 0TR . . . L 5 -9.843 -29.61 -45.617 1 83.09 ? CAE 0TR 410 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #