data_2YAC # _model_server_result.job_id K4BOUCgE7wbprXll4ww1Gg _model_server_result.datetime_utc '2024-11-22 19:09:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2YAC # _exptl.entry_id 2YAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.518 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-HYDROXYETHYL)-8-[[5-(4-METHYLPIPERAZIN-1-YL)-2-(TRIFLUOROMETHOXY)PHENYL]AMINO]-4,5-DIHYDROPYRIMIDO[5,4-G]INDAZOLE-3-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YAC _cell.length_a 66.595 _cell.length_b 66.595 _cell.length_c 154.035 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 51.345 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 59 A HIS 93 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A SG CYS 178 A CYS 212 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A SG CYS 221 A CYS 255 5_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 C ZN ZN . A ZN 502 1_555 D O4 TLA . A TLA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'C24 H27 F3 N8 O3' _chem_comp.formula_weight 532.518 _chem_comp.id 937 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-HYDROXYETHYL)-8-[[5-(4-METHYLPIPERAZIN-1-YL)-2-(TRIFLUOROMETHOXY)PHENYL]AMINO]-4,5-DIHYDROPYRIMIDO[5,4-G]INDAZOLE-3-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 937 sing 1 n y N1 C4 937 doub 2 n y C2 N3 937 doub 3 n y C2 N14 937 sing 4 n n N3 C6 937 sing 5 n y C4 C5 937 sing 6 n y C5 C6 937 doub 7 n y C5 C8 937 sing 8 n n C6 C10 937 sing 9 n y C7 C8 937 sing 10 n n C7 C9 937 sing 11 n n C9 C10 937 doub 12 n y C9 C13 937 sing 13 n y C10 N11 937 sing 14 n y N11 N12 937 sing 15 n y N11 C29 937 sing 16 n n N12 C13 937 doub 17 n y C13 C15 937 sing 18 n n N14 C17 937 sing 19 n n C15 O16 937 doub 20 n n C15 N28 937 sing 21 n n C17 C18 937 sing 22 n y C17 C22 937 doub 23 n y C18 C19 937 doub 24 n y C19 C20 937 sing 25 n y C19 N32 937 sing 26 n n C20 C21 937 doub 27 n y C21 C22 937 sing 28 n y C22 O23 937 sing 29 n n O23 C24 937 sing 30 n n C24 F25 937 sing 31 n n C24 F26 937 sing 32 n n C24 F27 937 sing 33 n n C29 C30 937 sing 34 n n C30 O31 937 sing 35 n n N32 C33 937 sing 36 n n N32 C37 937 sing 37 n n C33 C34 937 sing 38 n n C34 N35 937 sing 39 n n N35 C36 937 sing 40 n n N35 C38 937 sing 41 n n C36 C37 937 sing 42 n n C4 H4 937 sing 43 n n N14 H14 937 sing 44 n n C8 H81C 937 sing 45 n n C8 H82C 937 sing 46 n n C7 H71C 937 sing 47 n n C7 H72C 937 sing 48 n n C29 H291 937 sing 49 n n C29 H292 937 sing 50 n n N28 H281 937 sing 51 n n N28 H282 937 sing 52 n n C18 H18 937 sing 53 n n C20 H20 937 sing 54 n n C21 H21 937 sing 55 n n C30 H301 937 sing 56 n n C30 H302 937 sing 57 n n O31 H31 937 sing 58 n n C33 H331 937 sing 59 n n C33 H332 937 sing 60 n n C37 H371 937 sing 61 n n C37 H372 937 sing 62 n n C34 H341 937 sing 63 n n C34 H342 937 sing 64 n n C36 H361 937 sing 65 n n C36 H362 937 sing 66 n n C38 H381 937 sing 67 n n C38 H382 937 sing 68 n n C38 H383 937 sing 69 n n # _atom_sites.entry_id 2YAC _atom_sites.fract_transf_matrix[1][1] 0.015016 _atom_sites.fract_transf_matrix[1][2] 0.00867 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 937 A 1 501 501 937 937 . C 3 ZN A 1 502 502 ZN ZN . D 4 TLA A 1 503 503 TLA TLA . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 937 . . . B 2 -43.959 14.987 8.022 1 30.81 ? N1 937 501 A 1 HETATM 2 C C2 937 . . . B 2 -44.17 13.741 8.211 1 32.28 ? C2 937 501 A 1 HETATM 3 N N3 937 . . . B 2 -43.809 13.116 9.424 1 33.3 ? N3 937 501 A 1 HETATM 4 C C4 937 . . . B 2 -43.349 15.775 9.031 1 33.36 ? C4 937 501 A 1 HETATM 5 C C5 937 . . . B 2 -42.992 15.185 10.193 1 33.26 ? C5 937 501 A 1 HETATM 6 C C6 937 . . . B 2 -43.249 13.756 10.359 1 32.88 ? C6 937 501 A 1 HETATM 7 C C7 937 . . . B 2 -41.405 15.095 12.249 1 30.83 ? C7 937 501 A 1 HETATM 8 C C8 937 . . . B 2 -42.331 15.977 11.325 1 31.53 ? C8 937 501 A 1 HETATM 9 C C9 937 . . . B 2 -41.861 13.645 12.355 1 31.96 ? C9 937 501 A 1 HETATM 10 C C10 937 . . . B 2 -42.724 13.081 11.541 1 32.5 ? C10 937 501 A 1 HETATM 11 N N11 937 . . . B 2 -42.914 11.763 11.977 1 34.52 ? N11 937 501 A 1 HETATM 12 N N12 937 . . . B 2 -42.137 11.543 13.076 1 32.21 ? N12 937 501 A 1 HETATM 13 C C13 937 . . . B 2 -41.488 12.622 13.335 1 31.18 ? C13 937 501 A 1 HETATM 14 N N14 937 . . . B 2 -44.702 12.908 7.219 1 34.53 ? N14 937 501 A 1 HETATM 15 C C15 937 . . . B 2 -40.51 12.742 14.454 1 32.2 ? C15 937 501 A 1 HETATM 16 O O16 937 . . . B 2 -39.982 13.815 14.738 1 30.16 ? O16 937 501 A 1 HETATM 17 C C17 937 . . . B 2 -45.103 11.514 7.284 1 35.09 ? C17 937 501 A 1 HETATM 18 C C18 937 . . . B 2 -44.195 10.59 7.72 1 33.47 ? C18 937 501 A 1 HETATM 19 C C19 937 . . . B 2 -44.561 9.134 7.798 1 33.55 ? C19 937 501 A 1 HETATM 20 C C20 937 . . . B 2 -45.816 8.749 7.423 1 35.03 ? C20 937 501 A 1 HETATM 21 C C21 937 . . . B 2 -46.793 9.732 6.956 1 34.29 ? C21 937 501 A 1 HETATM 22 C C22 937 . . . B 2 -46.474 11.05 6.883 1 36.53 ? C22 937 501 A 1 HETATM 23 O O23 937 . . . B 2 -47.39 12.033 6.438 1 39.96 ? O23 937 501 A 1 HETATM 24 C C24 937 . . . B 2 -47.858 11.964 5.076 1 38.12 ? C24 937 501 A 1 HETATM 25 F F25 937 . . . B 2 -48.865 11.048 4.992 1 38.37 ? F25 937 501 A 1 HETATM 26 F F26 937 . . . B 2 -48.336 13.205 4.673 1 38.93 ? F26 937 501 A 1 HETATM 27 F F27 937 . . . B 2 -46.864 11.55 4.2 1 38.67 ? F27 937 501 A 1 HETATM 28 N N28 937 . . . B 2 -40.171 11.604 15.192 1 29.39 ? N28 937 501 A 1 HETATM 29 C C29 937 . . . B 2 -43.759 10.766 11.35 1 37.69 ? C29 937 501 A 1 HETATM 30 C C30 937 . . . B 2 -44.422 9.875 12.402 1 41.92 ? C30 937 501 A 1 HETATM 31 O O31 937 . . . B 2 -43.65 8.677 12.505 1 48.32 ? O31 937 501 A 1 HETATM 32 N N32 937 . . . B 2 -43.622 8.15 8.249 1 30.95 ? N32 937 501 A 1 HETATM 33 C C33 937 . . . B 2 -44.124 6.921 8.92 1 28.97 ? C33 937 501 A 1 HETATM 34 C C34 937 . . . B 2 -43.078 6.214 9.812 1 26.96 ? C34 937 501 A 1 HETATM 35 N N35 937 . . . B 2 -41.716 6.273 9.227 1 27.56 ? N35 937 501 A 1 HETATM 36 C C36 937 . . . B 2 -41.308 7.688 9.088 1 25.58 ? C36 937 501 A 1 HETATM 37 C C37 937 . . . B 2 -42.185 8.37 8.01 1 29.49 ? C37 937 501 A 1 HETATM 38 C C38 937 . . . B 2 -40.777 5.598 10.127 1 24.87 ? C38 937 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #