data_2YAN # _model_server_result.job_id Iy4X8MlBsJOlY2-0-PPN6g _model_server_result.datetime_utc '2024-10-20 07:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1341}' # _entry.id 2YAN # _exptl.entry_id 2YAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YAN _cell.length_a 118.317 _cell.length_b 118.317 _cell.length_c 58.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,O 1 1 B,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 32 A CYS 261 1_555 J SG2 GSH . A GSH 1341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? covale ? covale2 B SG CYS 32 B CYS 261 1_555 N SG2 GSH . B GSH 1338 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.138 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 138 n n N1 HN11 GSH sing 139 n n N1 HN12 GSH sing 140 n n CA1 C1 GSH sing 141 n n CA1 CB1 GSH sing 142 n n CA1 HA1 GSH sing 143 n n C1 O11 GSH doub 144 n n C1 O12 GSH sing 145 n n O12 H12 GSH sing 146 n n CB1 CG1 GSH sing 147 n n CB1 HB12 GSH sing 148 n n CB1 HB13 GSH sing 149 n n CG1 CD1 GSH sing 150 n n CG1 HG12 GSH sing 151 n n CG1 HG13 GSH sing 152 n n CD1 OE1 GSH doub 153 n n CD1 N2 GSH sing 154 n n N2 CA2 GSH sing 155 n n N2 HN2 GSH sing 156 n n CA2 C2 GSH sing 157 n n CA2 CB2 GSH sing 158 n n CA2 HA2 GSH sing 159 n n C2 O2 GSH doub 160 n n C2 N3 GSH sing 161 n n CB2 SG2 GSH sing 162 n n CB2 HB22 GSH sing 163 n n CB2 HB23 GSH sing 164 n n SG2 HSG GSH sing 165 n n N3 CA3 GSH sing 166 n n N3 HN3 GSH sing 167 n n CA3 C3 GSH sing 168 n n CA3 HA31 GSH sing 169 n n CA3 HA32 GSH sing 170 n n C3 O31 GSH doub 171 n n C3 O32 GSH sing 172 n n O32 H32 GSH sing 173 n n # _atom_sites.entry_id 2YAN _atom_sites.fract_transf_matrix[1][1] 0.008452 _atom_sites.fract_transf_matrix[1][2] 0.00488 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 1334 1334 EDO EDO . D 2 EDO A 1 1335 1335 EDO EDO . E 2 EDO A 1 1336 1336 EDO EDO . F 2 EDO A 1 1337 1337 EDO EDO . G 3 FE A 1 1338 1338 FE FE . H 4 SO4 A 1 1339 1339 SO4 SO4 . I 5 CL A 1 1340 1340 CL CL . J 6 GSH A 1 1341 1341 GSH GSH . K 2 EDO B 1 1335 1335 EDO EDO . L 2 EDO B 1 1336 1336 EDO EDO . M 2 EDO B 1 1337 1337 EDO EDO . N 6 GSH B 1 1338 1338 GSH GSH . O 7 HOH A 1 2001 2001 HOH HOH . O 7 HOH A 2 2002 2002 HOH HOH . O 7 HOH A 3 2003 2003 HOH HOH . O 7 HOH A 4 2004 2004 HOH HOH . O 7 HOH A 5 2005 2005 HOH HOH . O 7 HOH A 6 2006 2006 HOH HOH . O 7 HOH A 7 2007 2007 HOH HOH . O 7 HOH A 8 2008 2008 HOH HOH . O 7 HOH A 9 2009 2009 HOH HOH . O 7 HOH A 10 2010 2010 HOH HOH . O 7 HOH A 11 2011 2011 HOH HOH . O 7 HOH A 12 2012 2012 HOH HOH . O 7 HOH A 13 2013 2013 HOH HOH . O 7 HOH A 14 2014 2014 HOH HOH . O 7 HOH A 15 2015 2015 HOH HOH . O 7 HOH A 16 2016 2016 HOH HOH . O 7 HOH A 17 2017 2017 HOH HOH . O 7 HOH A 18 2018 2018 HOH HOH . O 7 HOH A 19 2019 2019 HOH HOH . O 7 HOH A 20 2020 2020 HOH HOH . O 7 HOH A 21 2021 2021 HOH HOH . O 7 HOH A 22 2022 2022 HOH HOH . O 7 HOH A 23 2023 2023 HOH HOH . O 7 HOH A 24 2024 2024 HOH HOH . O 7 HOH A 25 2025 2025 HOH HOH . O 7 HOH A 26 2026 2026 HOH HOH . O 7 HOH A 27 2027 2027 HOH HOH . O 7 HOH A 28 2028 2028 HOH HOH . O 7 HOH A 29 2029 2029 HOH HOH . O 7 HOH A 30 2030 2030 HOH HOH . O 7 HOH A 31 2031 2031 HOH HOH . O 7 HOH A 32 2032 2032 HOH HOH . O 7 HOH A 33 2033 2033 HOH HOH . O 7 HOH A 34 2034 2034 HOH HOH . O 7 HOH A 35 2035 2035 HOH HOH . O 7 HOH A 36 2036 2036 HOH HOH . O 7 HOH A 37 2037 2037 HOH HOH . O 7 HOH A 38 2038 2038 HOH HOH . O 7 HOH A 39 2039 2039 HOH HOH . O 7 HOH A 40 2040 2040 HOH HOH . O 7 HOH A 41 2041 2041 HOH HOH . O 7 HOH A 42 2042 2042 HOH HOH . O 7 HOH A 43 2043 2043 HOH HOH . O 7 HOH A 44 2044 2044 HOH HOH . O 7 HOH A 45 2045 2045 HOH HOH . O 7 HOH A 46 2046 2046 HOH HOH . O 7 HOH A 47 2047 2047 HOH HOH . O 7 HOH A 48 2048 2048 HOH HOH . O 7 HOH A 49 2049 2049 HOH HOH . O 7 HOH A 50 2050 2050 HOH HOH . O 7 HOH A 51 2051 2051 HOH HOH . O 7 HOH A 52 2052 2052 HOH HOH . O 7 HOH A 53 2053 2053 HOH HOH . O 7 HOH A 54 2054 2054 HOH HOH . O 7 HOH A 55 2055 2055 HOH HOH . O 7 HOH A 56 2056 2056 HOH HOH . O 7 HOH A 57 2057 2057 HOH HOH . O 7 HOH A 58 2058 2058 HOH HOH . O 7 HOH A 59 2059 2059 HOH HOH . O 7 HOH A 60 2060 2060 HOH HOH . O 7 HOH A 61 2061 2061 HOH HOH . O 7 HOH A 62 2062 2062 HOH HOH . O 7 HOH A 63 2063 2063 HOH HOH . O 7 HOH A 64 2064 2064 HOH HOH . O 7 HOH A 65 2065 2065 HOH HOH . O 7 HOH A 66 2066 2066 HOH HOH . O 7 HOH A 67 2067 2067 HOH HOH . O 7 HOH A 68 2068 2068 HOH HOH . O 7 HOH A 69 2069 2069 HOH HOH . O 7 HOH A 70 2070 2070 HOH HOH . O 7 HOH A 71 2071 2071 HOH HOH . O 7 HOH A 72 2072 2072 HOH HOH . O 7 HOH A 73 2073 2073 HOH HOH . O 7 HOH A 74 2074 2074 HOH HOH . O 7 HOH A 75 2075 2075 HOH HOH . O 7 HOH A 76 2076 2076 HOH HOH . O 7 HOH A 77 2077 2077 HOH HOH . O 7 HOH A 78 2078 2078 HOH HOH . O 7 HOH A 79 2079 2079 HOH HOH . O 7 HOH A 80 2080 2080 HOH HOH . O 7 HOH A 81 2081 2081 HOH HOH . O 7 HOH A 82 2082 2082 HOH HOH . O 7 HOH A 83 2083 2083 HOH HOH . O 7 HOH A 84 2084 2084 HOH HOH . O 7 HOH A 85 2085 2085 HOH HOH . O 7 HOH A 86 2086 2086 HOH HOH . O 7 HOH A 87 2087 2087 HOH HOH . O 7 HOH A 88 2088 2088 HOH HOH . O 7 HOH A 89 2089 2089 HOH HOH . O 7 HOH A 90 2090 2090 HOH HOH . O 7 HOH A 91 2091 2091 HOH HOH . O 7 HOH A 92 2092 2092 HOH HOH . O 7 HOH A 93 2093 2093 HOH HOH . O 7 HOH A 94 2094 2094 HOH HOH . O 7 HOH A 95 2095 2095 HOH HOH . O 7 HOH A 96 2096 2096 HOH HOH . O 7 HOH A 97 2097 2097 HOH HOH . P 7 HOH B 1 2001 2001 HOH HOH . P 7 HOH B 2 2002 2002 HOH HOH . P 7 HOH B 3 2003 2003 HOH HOH . P 7 HOH B 4 2004 2004 HOH HOH . P 7 HOH B 5 2005 2005 HOH HOH . P 7 HOH B 6 2006 2006 HOH HOH . P 7 HOH B 7 2007 2007 HOH HOH . P 7 HOH B 8 2008 2008 HOH HOH . P 7 HOH B 9 2009 2009 HOH HOH . P 7 HOH B 10 2010 2010 HOH HOH . P 7 HOH B 11 2011 2011 HOH HOH . P 7 HOH B 12 2012 2012 HOH HOH . P 7 HOH B 13 2013 2013 HOH HOH . P 7 HOH B 14 2014 2014 HOH HOH . P 7 HOH B 15 2015 2015 HOH HOH . P 7 HOH B 16 2016 2016 HOH HOH . P 7 HOH B 17 2017 2017 HOH HOH . P 7 HOH B 18 2018 2018 HOH HOH . P 7 HOH B 19 2019 2019 HOH HOH . P 7 HOH B 20 2020 2020 HOH HOH . P 7 HOH B 21 2021 2021 HOH HOH . P 7 HOH B 22 2022 2022 HOH HOH . P 7 HOH B 23 2023 2023 HOH HOH . P 7 HOH B 24 2024 2024 HOH HOH . P 7 HOH B 25 2025 2025 HOH HOH . P 7 HOH B 26 2026 2026 HOH HOH . P 7 HOH B 27 2027 2027 HOH HOH . P 7 HOH B 28 2028 2028 HOH HOH . P 7 HOH B 29 2029 2029 HOH HOH . P 7 HOH B 30 2030 2030 HOH HOH . P 7 HOH B 31 2031 2031 HOH HOH . P 7 HOH B 32 2032 2032 HOH HOH . P 7 HOH B 33 2033 2033 HOH HOH . P 7 HOH B 34 2034 2034 HOH HOH . P 7 HOH B 35 2035 2035 HOH HOH . P 7 HOH B 36 2036 2036 HOH HOH . P 7 HOH B 37 2037 2037 HOH HOH . P 7 HOH B 38 2038 2038 HOH HOH . P 7 HOH B 39 2039 2039 HOH HOH . P 7 HOH B 40 2040 2040 HOH HOH . P 7 HOH B 41 2041 2041 HOH HOH . P 7 HOH B 42 2042 2042 HOH HOH . P 7 HOH B 43 2043 2043 HOH HOH . P 7 HOH B 44 2044 2044 HOH HOH . P 7 HOH B 45 2045 2045 HOH HOH . P 7 HOH B 46 2046 2046 HOH HOH . P 7 HOH B 47 2047 2047 HOH HOH . P 7 HOH B 48 2048 2048 HOH HOH . P 7 HOH B 49 2049 2049 HOH HOH . P 7 HOH B 50 2050 2050 HOH HOH . P 7 HOH B 51 2051 2051 HOH HOH . P 7 HOH B 52 2052 2052 HOH HOH . P 7 HOH B 53 2053 2053 HOH HOH . P 7 HOH B 54 2054 2054 HOH HOH . P 7 HOH B 55 2055 2055 HOH HOH . P 7 HOH B 56 2056 2056 HOH HOH . P 7 HOH B 57 2057 2057 HOH HOH . P 7 HOH B 58 2058 2058 HOH HOH . P 7 HOH B 59 2059 2059 HOH HOH . P 7 HOH B 60 2060 2060 HOH HOH . P 7 HOH B 61 2061 2061 HOH HOH . P 7 HOH B 62 2062 2062 HOH HOH . P 7 HOH B 63 2063 2063 HOH HOH . P 7 HOH B 64 2064 2064 HOH HOH . P 7 HOH B 65 2065 2065 HOH HOH . P 7 HOH B 66 2066 2066 HOH HOH . P 7 HOH B 67 2067 2067 HOH HOH . P 7 HOH B 68 2068 2068 HOH HOH . P 7 HOH B 69 2069 2069 HOH HOH . P 7 HOH B 70 2070 2070 HOH HOH . P 7 HOH B 71 2071 2071 HOH HOH . P 7 HOH B 72 2072 2072 HOH HOH . P 7 HOH B 73 2073 2073 HOH HOH . P 7 HOH B 74 2074 2074 HOH HOH . P 7 HOH B 75 2075 2075 HOH HOH . P 7 HOH B 76 2076 2076 HOH HOH . P 7 HOH B 77 2077 2077 HOH HOH . P 7 HOH B 78 2078 2078 HOH HOH . P 7 HOH B 79 2079 2079 HOH HOH . P 7 HOH B 80 2080 2080 HOH HOH . P 7 HOH B 81 2081 2081 HOH HOH . P 7 HOH B 82 2082 2082 HOH HOH . P 7 HOH B 83 2083 2083 HOH HOH . P 7 HOH B 84 2084 2084 HOH HOH . P 7 HOH B 85 2085 2085 HOH HOH . P 7 HOH B 86 2086 2086 HOH HOH . P 7 HOH B 87 2087 2087 HOH HOH . P 7 HOH B 88 2088 2088 HOH HOH . P 7 HOH B 89 2089 2089 HOH HOH . P 7 HOH B 90 2090 2090 HOH HOH . P 7 HOH B 91 2091 2091 HOH HOH . P 7 HOH B 92 2092 2092 HOH HOH . P 7 HOH B 93 2093 2093 HOH HOH . P 7 HOH B 94 2094 2094 HOH HOH . P 7 HOH B 95 2095 2095 HOH HOH . P 7 HOH B 96 2096 2096 HOH HOH . P 7 HOH B 97 2097 2097 HOH HOH . P 7 HOH B 98 2098 2098 HOH HOH . P 7 HOH B 99 2099 2099 HOH HOH . P 7 HOH B 100 2100 2100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . J 6 19.19 -48.98 24.306 1 25.31 ? N1 GSH 1341 A 1 HETATM 2 C CA1 GSH . . . J 6 18.449 -47.949 23.508 1 24.95 ? CA1 GSH 1341 A 1 HETATM 3 C C1 GSH . . . J 6 18.782 -48.192 22.077 1 25.12 ? C1 GSH 1341 A 1 HETATM 4 O O11 GSH . . . J 6 17.964 -47.896 21.142 1 25.06 ? O11 GSH 1341 A 1 HETATM 5 O O12 GSH . . . J 6 19.927 -48.671 21.821 1 23.44 ? O12 GSH 1341 A 1 HETATM 6 C CB1 GSH . . . J 6 18.873 -46.502 23.863 1 26.73 ? CB1 GSH 1341 A 1 HETATM 7 C CG1 GSH . . . J 6 18.304 -45.363 23.005 1 26.06 ? CG1 GSH 1341 A 1 HETATM 8 C CD1 GSH . . . J 6 18.358 -43.98 23.669 1 23.29 ? CD1 GSH 1341 A 1 HETATM 9 O OE1 GSH . . . J 6 19.039 -43.787 24.857 1 25.99 ? OE1 GSH 1341 A 1 HETATM 10 N N2 GSH . . . J 6 17.727 -43.017 23.07 1 26.13 ? N2 GSH 1341 A 1 HETATM 11 C CA2 GSH . . . J 6 17.438 -41.742 23.664 1 28.26 ? CA2 GSH 1341 A 1 HETATM 12 C C2 GSH . . . J 6 15.964 -41.447 23.619 1 28.15 ? C2 GSH 1341 A 1 HETATM 13 O O2 GSH . . . J 6 15.224 -41.912 22.563 1 28.05 ? O2 GSH 1341 A 1 HETATM 14 C CB2 GSH . . . J 6 18.226 -40.667 22.885 1 30.88 ? CB2 GSH 1341 A 1 HETATM 15 S SG2 GSH . . . J 6 20.014 -40.938 22.994 1 32.96 ? SG2 GSH 1341 A 1 HETATM 16 N N3 GSH . . . J 6 15.424 -40.676 24.551 1 31.38 ? N3 GSH 1341 A 1 HETATM 17 C CA3 GSH . . . J 6 13.994 -40.388 24.579 1 35 ? CA3 GSH 1341 A 1 HETATM 18 C C3 GSH . . . J 6 13.455 -39.49 23.486 1 38.21 ? C3 GSH 1341 A 1 HETATM 19 O O31 GSH . . . J 6 12.194 -39.419 23.28 1 37.66 ? O31 GSH 1341 A 1 HETATM 20 O O32 GSH . . . J 6 14.227 -38.817 22.759 1 35.68 ? O32 GSH 1341 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #