data_2YAT
#
_model_server_result.job_id            ArqAVYbOvzy8DJNY4MnvWw 
_model_server_result.datetime_utc      '2025-02-18 08:52:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1549}' 
#
_entry.id    2YAT 
#
_exptl.entry_id    2YAT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.714 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ESTRADIOL-PYRIDINIUM TETRAACETIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2YAT 
_cell.length_a            64.693 
_cell.length_b            64.693 
_cell.length_c            133.345 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        153 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 1 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 -x+y,y,-z-1/3 -1 0 0 0 1 0 0 0 -1 0 0 -44.448333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C N1 EEU . A EEU 1549 1_555 B EU EU . A EU 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc2 C N2 EEU . A EEU 1549 1_555 B EU EU . A EU 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc3 C N3 EEU . A EEU 1549 1_555 B EU EU . A EU 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc4 C O3 EEU . A EEU 1549 1_555 B EU EU . A EU 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc5 C O4 EEU . A EEU 1549 1_555 B EU EU . A EU 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc6 C O5 EEU . A EEU 1549 1_555 B EU EU . A EU 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc7 C O6 EEU . A EEU 1549 1_555 B EU EU . A EU 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
#
_chem_comp.formula           'C35 H41 N3 O10' 
_chem_comp.formula_weight    663.714 
_chem_comp.id                EEU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ESTRADIOL-PYRIDINIUM TETRAACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O9 C34 EEU doub 83 n n 
O5 C34 EEU sing 84 n n 
O10 C35 EEU doub 85 n n 
C34 C30 EEU sing 86 n n 
C35 O6 EEU sing 87 n n 
C35 C31 EEU sing 88 n n 
O4 C33 EEU doub 89 n n 
C30 N3 EEU sing 90 n n 
C33 O8 EEU sing 91 n n 
C33 C29 EEU sing 92 n n 
C31 N3 EEU sing 93 n n 
N3 C27 EEU sing 94 n n 
C29 N2 EEU sing 95 n n 
O3 C32 EEU doub 96 n n 
C27 C25 EEU sing 97 n n 
N2 C28 EEU sing 98 n n 
N2 C26 EEU sing 99 n n 
N1 C25 EEU doub 100 n y 
N1 C24 EEU sing 101 n y 
C28 C32 EEU sing 102 n n 
C32 O7 EEU sing 103 n n 
C25 C23 EEU sing 104 n y 
C26 C24 EEU sing 105 n n 
C24 C22 EEU doub 106 n y 
C23 C21 EEU doub 107 n y 
C22 C21 EEU sing 108 n y 
C21 C1 EEU sing 109 n n 
C1 C2 EEU trip 110 n n 
C2 C3 EEU sing 111 n n 
C5 C4 EEU sing 112 n n 
C5 C6 EEU sing 113 n n 
C4 C3 EEU sing 114 n n 
C8 C9 EEU sing 115 n n 
C8 C7 EEU sing 116 n n 
C6 C7 EEU sing 117 n n 
C6 C10 EEU sing 118 n n 
C3 O1 EEU sing 119 n n 
C3 C10 EEU sing 120 n n 
C9 C17 EEU sing 121 n n 
C7 C14 EEU sing 122 n n 
C10 C12 EEU sing 123 n n 
C10 C11 EEU sing 124 n n 
C14 C15 EEU sing 125 n n 
C14 C13 EEU sing 126 n n 
C17 C15 EEU doub 127 n y 
C17 C18 EEU sing 128 n y 
C12 C13 EEU sing 129 n n 
C15 C16 EEU sing 130 n y 
C18 C19 EEU doub 131 n y 
C16 C20 EEU doub 132 n y 
C19 C20 EEU sing 133 n y 
C19 O2 EEU sing 134 n n 
O1 H1 EEU sing 135 n n 
C4 H2 EEU sing 136 n n 
C4 H3 EEU sing 137 n n 
C5 H4 EEU sing 138 n n 
C5 H5 EEU sing 139 n n 
C6 H6 EEU sing 140 n n 
C7 H7 EEU sing 141 n n 
C8 H8 EEU sing 142 n n 
C8 H9 EEU sing 143 n n 
C9 H10 EEU sing 144 n n 
C9 H11 EEU sing 145 n n 
C11 H12 EEU sing 146 n n 
C11 H13 EEU sing 147 n n 
C11 H14 EEU sing 148 n n 
C12 H15 EEU sing 149 n n 
C12 H16 EEU sing 150 n n 
C13 H17 EEU sing 151 n n 
C13 H18 EEU sing 152 n n 
C14 H19 EEU sing 153 n n 
C16 H20 EEU sing 154 n n 
C18 H21 EEU sing 155 n n 
O2 H22 EEU sing 156 n n 
C20 H23 EEU sing 157 n n 
C22 H24 EEU sing 158 n n 
C23 H25 EEU sing 159 n n 
C26 H26 EEU sing 160 n n 
C26 H27 EEU sing 161 n n 
C27 H28 EEU sing 162 n n 
C27 H29 EEU sing 163 n n 
O5 H32 EEU sing 164 n n 
O6 H33 EEU sing 165 n n 
C28 H34 EEU sing 166 n n 
C28 H35 EEU sing 167 n n 
C29 H36 EEU sing 168 n n 
C29 H37 EEU sing 169 n n 
C30 H38 EEU sing 170 n n 
C30 H39 EEU sing 171 n n 
C31 H40 EEU sing 172 n n 
C31 H41 EEU sing 173 n n 
O7 H42 EEU sing 174 n n 
O8 H43 EEU sing 175 n n 
#
_atom_sites.entry_id                     2YAT 
_atom_sites.fract_transf_matrix[1][1]    0.015458 
_atom_sites.fract_transf_matrix[1][2]    0.008924 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007499 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EU A 1 1550 1550 EU EU . 
C 3 EEU A 1 1549 1549 EEU EEU . 
D 4 FMT A 1 1551 1551 FMT FMT . 
E 4 FMT A 1 1552 1552 FMT FMT . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
F 5 HOH A 7 2007 2007 HOH HOH . 
F 5 HOH A 8 2008 2008 HOH HOH . 
F 5 HOH A 9 2009 2009 HOH HOH . 
F 5 HOH A 10 2010 2010 HOH HOH . 
F 5 HOH A 11 2011 2011 HOH HOH . 
F 5 HOH A 12 2012 2012 HOH HOH . 
F 5 HOH A 13 2013 2013 HOH HOH . 
F 5 HOH A 14 2014 2014 HOH HOH . 
F 5 HOH A 15 2015 2015 HOH HOH . 
F 5 HOH A 16 2016 2016 HOH HOH . 
F 5 HOH A 17 2017 2017 HOH HOH . 
F 5 HOH A 18 2018 2018 HOH HOH . 
F 5 HOH A 19 2019 2019 HOH HOH . 
F 5 HOH A 20 2020 2020 HOH HOH . 
F 5 HOH A 21 2021 2021 HOH HOH . 
F 5 HOH A 22 2022 2022 HOH HOH . 
F 5 HOH A 23 2023 2023 HOH HOH . 
F 5 HOH A 24 2024 2024 HOH HOH . 
F 5 HOH A 25 2025 2025 HOH HOH . 
F 5 HOH A 26 2026 2026 HOH HOH . 
F 5 HOH A 27 2027 2027 HOH HOH . 
F 5 HOH A 28 2028 2028 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EEU . . . C 3 -14.199 2.057 -25.678 1 61 ? C1 EEU 1549 A 1 
HETATM 2 C C2 EEU . . . C 3 -13.62 1.873 -24.594 1 60.05 ? C2 EEU 1549 A 1 
HETATM 3 C C3 EEU . . . C 3 -12.944 1.496 -23.352 1 54.54 ? C3 EEU 1549 A 1 
HETATM 4 O O1 EEU . . . C 3 -12.525 2.606 -22.596 1 55.01 ? O1 EEU 1549 A 1 
HETATM 5 C C4 EEU . . . C 3 -11.78 0.664 -23.82 1 52.34 ? C4 EEU 1549 A 1 
HETATM 6 C C5 EEU . . . C 3 -12.324 -0.746 -23.965 1 48.9 ? C5 EEU 1549 A 1 
HETATM 7 C C6 EEU . . . C 3 -13.706 -0.688 -23.39 1 44.96 ? C6 EEU 1549 A 1 
HETATM 8 C C7 EEU . . . C 3 -14.191 -1.9 -22.655 1 41.34 ? C7 EEU 1549 A 1 
HETATM 9 C C8 EEU . . . C 3 -14.075 -3.125 -23.537 1 40.47 ? C8 EEU 1549 A 1 
HETATM 10 C C9 EEU . . . C 3 -14.757 -4.362 -23.034 1 40.23 ? C9 EEU 1549 A 1 
HETATM 11 C C10 EEU . . . C 3 -13.731 0.532 -22.534 1 48.49 ? C10 EEU 1549 A 1 
HETATM 12 C C11 EEU . . . C 3 -12.922 0.317 -21.297 1 48.09 ? C11 EEU 1549 A 1 
HETATM 13 C C12 EEU . . . C 3 -15.159 0.906 -22.2 1 46.23 ? C12 EEU 1549 A 1 
HETATM 14 C C13 EEU . . . C 3 -15.816 -0.292 -21.524 1 44.3 ? C13 EEU 1549 A 1 
HETATM 15 C C14 EEU . . . C 3 -15.632 -1.559 -22.367 1 43.11 ? C14 EEU 1549 A 1 
HETATM 16 C C15 EEU . . . C 3 -16.389 -2.727 -21.898 1 43.29 ? C15 EEU 1549 A 1 
HETATM 17 C C16 EEU . . . C 3 -17.541 -2.533 -21.139 1 39.78 ? C16 EEU 1549 A 1 
HETATM 18 C C17 EEU . . . C 3 -15.978 -4.087 -22.226 1 43.13 ? C17 EEU 1549 A 1 
HETATM 19 C C18 EEU . . . C 3 -16.762 -5.142 -21.748 1 43.55 ? C18 EEU 1549 A 1 
HETATM 20 C C19 EEU . . . C 3 -17.917 -4.893 -20.975 1 40.82 ? C19 EEU 1549 A 1 
HETATM 21 O O2 EEU . . . C 3 -18.654 -5.921 -20.532 1 42.2 ? O2 EEU 1549 A 1 
HETATM 22 C C20 EEU . . . C 3 -18.293 -3.592 -20.681 1 37.19 ? C20 EEU 1549 A 1 
HETATM 23 C C21 EEU . . . C 3 -15.035 2.522 -26.9 1 102.04 ? C21 EEU 1549 A 1 
HETATM 24 C C22 EEU . . . C 3 -16.251 2.664 -27.41 1 100.64 ? C22 EEU 1549 A 1 
HETATM 25 C C23 EEU . . . C 3 -13.959 2.935 -27.69 1 103.01 ? C23 EEU 1549 A 1 
HETATM 26 C C24 EEU . . . C 3 -16.848 3.104 -28.509 1 100.12 ? C24 EEU 1549 A 1 
HETATM 27 C C25 EEU . . . C 3 -14.477 3.445 -28.945 1 104.3 ? C25 EEU 1549 A 1 
HETATM 28 N N1 EEU . . . C 3 -15.847 3.531 -29.345 1 104.65 ? N1 EEU 1549 A 1 
HETATM 29 C C26 EEU . . . C 3 -18.308 3.125 -28.782 1 97.53 ? C26 EEU 1549 A 1 
HETATM 30 C C27 EEU . . . C 3 -13.461 3.949 -29.941 1 104.87 ? C27 EEU 1549 A 1 
HETATM 31 N N2 EEU . . . C 3 -18.483 4.021 -29.871 1 94.28 ? N2 EEU 1549 A 1 
HETATM 32 N N3 EEU . . . C 3 -14.011 3.842 -31.264 1 105.09 ? N3 EEU 1549 A 1 
HETATM 33 O O3 EEU . . . C 3 -16.849 6.633 -30.442 1 73.59 ? O3 EEU 1549 A 1 
HETATM 34 O O4 EEU . . . C 3 -18.949 5.314 -32.212 1 109.33 ? O4 EEU 1549 A 1 
HETATM 35 O O5 EEU . . . C 3 -15.123 5.12 -33.563 1 119.14 ? O5 EEU 1549 A 1 
HETATM 36 O O6 EEU . . . C 3 -16.337 2.274 -32.73 1 91.44 ? O6 EEU 1549 A 1 
HETATM 37 C C28 EEU . . . C 3 -18.797 5.36 -29.313 1 86.23 ? C28 EEU 1549 A 1 
HETATM 38 C C29 EEU . . . C 3 -19.511 3.394 -30.696 1 97.98 ? C29 EEU 1549 A 1 
HETATM 39 C C30 EEU . . . C 3 -13.093 4.587 -32.116 1 110.44 ? C30 EEU 1549 A 1 
HETATM 40 C C31 EEU . . . C 3 -14.005 2.412 -31.618 1 100.8 ? C31 EEU 1549 A 1 
HETATM 41 C C32 EEU . . . C 3 -17.632 6.378 -29.261 1 79.3 ? C32 EEU 1549 A 1 
HETATM 42 C C33 EEU . . . C 3 -19.938 4.404 -31.72 1 104.2 ? C33 EEU 1549 A 1 
HETATM 43 C C34 EEU . . . C 3 -13.773 5.473 -33.145 1 115.93 ? C34 EEU 1549 A 1 
HETATM 44 C C35 EEU . . . C 3 -14.943 1.956 -32.743 1 95.86 ? C35 EEU 1549 A 1 
HETATM 45 O O7 EEU . . . C 3 -17.826 7.415 -28.55 1 79.73 ? O7 EEU 1549 A 1 
HETATM 46 O O8 EEU . . . C 3 -21.161 4.749 -31.689 1 104.45 ? O8 EEU 1549 A 1 
HETATM 47 O O9 EEU . . . C 3 -13.015 6.082 -33.978 1 116.56 ? O9 EEU 1549 A 1 
HETATM 48 O O10 EEU . . . C 3 -14.613 0.914 -33.402 1 96.56 ? O10 EEU 1549 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#