data_2YAU
#
_model_server_result.job_id            sKojr14pim_gUIn5PMp8YQ 
_model_server_result.datetime_utc      '2024-11-17 10:54:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yau 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    2YAU 
#
_exptl.entry_id    2YAU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YAU 
_cell.length_a            103.058 
_cell.length_b            103.058 
_cell.length_c            191.604 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YAU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 109 A CYS 89 1_555 A SG CYS 233 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 B SG CYS 109 B CYS 89 1_555 B SG CYS 233 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 A SG CYS 72 A CYS 52 1_555 E AU AU . A AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc2 A SG CYS 77 A CYS 57 1_555 E AU AU . A AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 E AU AU . A AU 600 1_555 G CL CL . A CL 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc4 B SG CYS 72 B CYS 52 1_555 K AU AU . B AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc5 B SG CYS 77 B CYS 57 1_555 K AU AU . B AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc6 K AU AU . B AU 600 1_555 M CL CL . B CL 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     2YAU 
_atom_sites.fract_transf_matrix[1][1]    0.009703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009703 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 500 500 FAD FAD . 
D 3 NDP A 1 550 550 NDP NDP . 
E 4 AU A 1 600 600 AU AU . 
F 5 TS8 A 1 650 650 TS8 TS8 . 
G 6 CL A 1 1489 1489 CL CL . 
H 7 SO4 A 1 1490 1490 SO4 SO4 . 
I 2 FAD B 1 500 500 FAD FAD . 
J 3 NDP B 1 550 550 NDP NDP . 
K 4 AU B 1 600 600 AU AU . 
L 5 TS8 B 1 650 650 TS8 TS8 . 
M 6 CL B 1 1489 1489 CL CL . 
N 7 SO4 B 1 1490 1490 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 -31.227 -56.582 -7.97 1 87.71 ? PA FAD 500 A 1 
HETATM 2 O O1A FAD . . . C 2 -31.898 -56.791 -6.643 1 87.96 ? O1A FAD 500 A 1 
HETATM 3 O O2A FAD . . . C 2 -30.567 -55.231 -8.035 1 88.03 ? O2A FAD 500 A 1 
HETATM 4 O O5B FAD . . . C 2 -32.271 -56.789 -9.167 1 88.15 ? O5B FAD 500 A 1 
HETATM 5 C C5B FAD . . . C 2 -33.183 -57.858 -9.112 1 89.4 ? C5B FAD 500 A 1 
HETATM 6 C C4B FAD . . . C 2 -34.11 -57.829 -10.321 1 90.39 ? C4B FAD 500 A 1 
HETATM 7 O O4B FAD . . . C 2 -34.748 -59.085 -10.458 1 90.63 ? O4B FAD 500 A 1 
HETATM 8 C C3B FAD . . . C 2 -35.222 -56.795 -10.163 1 90.78 ? C3B FAD 500 A 1 
HETATM 9 O O3B FAD . . . C 2 -35.212 -55.904 -11.261 1 91.36 ? O3B FAD 500 A 1 
HETATM 10 C C2B FAD . . . C 2 -36.506 -57.599 -10.131 1 90.52 ? C2B FAD 500 A 1 
HETATM 11 O O2B FAD . . . C 2 -37.559 -56.969 -10.822 1 89.53 ? O2B FAD 500 A 1 
HETATM 12 C C1B FAD . . . C 2 -36.095 -58.88 -10.823 1 90.89 ? C1B FAD 500 A 1 
HETATM 13 N N9A FAD . . . C 2 -36.98 -59.996 -10.443 1 91.52 ? N9A FAD 500 A 1 
HETATM 14 C C8A FAD . . . C 2 -37.516 -60.249 -9.206 1 91.81 ? C8A FAD 500 A 1 
HETATM 15 N N7A FAD . . . C 2 -38.283 -61.361 -9.3 1 92.01 ? N7A FAD 500 A 1 
HETATM 16 C C5A FAD . . . C 2 -38.249 -61.82 -10.571 1 91.53 ? C5A FAD 500 A 1 
HETATM 17 C C6A FAD . . . C 2 -38.86 -62.907 -11.191 1 91.21 ? C6A FAD 500 A 1 
HETATM 18 N N6A FAD . . . C 2 -40.076 -63.24 -10.771 1 90.8 ? N6A FAD 500 A 1 
HETATM 19 N N1A FAD . . . C 2 -38.608 -63.121 -12.529 1 91.36 ? N1A FAD 500 A 1 
HETATM 20 C C2A FAD . . . C 2 -37.8 -62.267 -13.249 1 91.43 ? C2A FAD 500 A 1 
HETATM 21 N N3A FAD . . . C 2 -37.212 -61.189 -12.619 1 91.4 ? N3A FAD 500 A 1 
HETATM 22 C C4A FAD . . . C 2 -37.433 -60.968 -11.3 1 91.5 ? C4A FAD 500 A 1 
HETATM 23 N N1 FAD . . . C 2 -26.424 -50.693 -2.275 1 91.18 ? N1 FAD 500 A 1 
HETATM 24 C C2 FAD . . . C 2 -25.305 -49.881 -2.374 1 91.4 ? C2 FAD 500 A 1 
HETATM 25 O O2 FAD . . . C 2 -24.199 -50.362 -2.58 1 91.5 ? O2 FAD 500 A 1 
HETATM 26 N N3 FAD . . . C 2 -25.424 -48.515 -2.217 1 91.37 ? N3 FAD 500 A 1 
HETATM 27 C C4 FAD . . . C 2 -26.657 -47.97 -1.977 1 91.18 ? C4 FAD 500 A 1 
HETATM 28 O O4 FAD . . . C 2 -26.772 -46.761 -1.842 1 91.07 ? O4 FAD 500 A 1 
HETATM 29 C C4X FAD . . . C 2 -27.776 -48.774 -1.828 1 90.94 ? C4X FAD 500 A 1 
HETATM 30 N N5 FAD . . . C 2 -28.991 -48.198 -1.576 1 90.47 ? N5 FAD 500 A 1 
HETATM 31 C C5X FAD . . . C 2 -30.118 -48.975 -1.417 1 90.15 ? C5X FAD 500 A 1 
HETATM 32 C C6 FAD . . . C 2 -31.333 -48.364 -1.109 1 90.04 ? C6 FAD 500 A 1 
HETATM 33 C C7 FAD . . . C 2 -32.485 -49.132 -0.947 1 90.03 ? C7 FAD 500 A 1 
HETATM 34 C C7M FAD . . . C 2 -33.784 -48.45 -0.618 1 90 ? C7M FAD 500 A 1 
HETATM 35 C C8 FAD . . . C 2 -32.409 -50.52 -1.084 1 89.99 ? C8 FAD 500 A 1 
HETATM 36 C C8M FAD . . . C 2 -33.624 -51.389 -0.91 1 89.66 ? C8M FAD 500 A 1 
HETATM 37 C C9 FAD . . . C 2 -31.187 -51.125 -1.385 1 90.07 ? C9 FAD 500 A 1 
HETATM 38 C C9A FAD . . . C 2 -30.028 -50.359 -1.555 1 90.02 ? C9A FAD 500 A 1 
HETATM 39 N N10 FAD . . . C 2 -28.8 -50.943 -1.865 1 90.14 ? N10 FAD 500 A 1 
HETATM 40 C C10 FAD . . . C 2 -27.666 -50.15 -1.994 1 90.79 ? C10 FAD 500 A 1 
HETATM 41 C C1' FAD . . . C 2 -28.684 -52.435 -1.995 1 89.66 ? C1' FAD 500 A 1 
HETATM 42 C C2' FAD . . . C 2 -28.755 -52.861 -3.448 1 89.26 ? C2' FAD 500 A 1 
HETATM 43 O O2' FAD . . . C 2 -30.059 -52.599 -3.893 1 89.39 ? O2' FAD 500 A 1 
HETATM 44 C C3' FAD . . . C 2 -28.516 -54.362 -3.609 1 89.11 ? C3' FAD 500 A 1 
HETATM 45 O O3' FAD . . . C 2 -27.481 -54.81 -2.761 1 89.3 ? O3' FAD 500 A 1 
HETATM 46 C C4' FAD . . . C 2 -28.176 -54.719 -5.05 1 89.31 ? C4' FAD 500 A 1 
HETATM 47 O O4' FAD . . . C 2 -28.752 -53.786 -5.935 1 89.09 ? O4' FAD 500 A 1 
HETATM 48 C C5' FAD . . . C 2 -28.716 -56.112 -5.353 1 89.66 ? C5' FAD 500 A 1 
HETATM 49 O O5' FAD . . . C 2 -28.61 -56.365 -6.732 1 89.67 ? O5' FAD 500 A 1 
HETATM 50 P P FAD . . . C 2 -28.831 -57.843 -7.326 1 89.57 ? P FAD 500 A 1 
HETATM 51 O O1P FAD . . . C 2 -27.697 -58.14 -8.273 1 89.38 ? O1P FAD 500 A 1 
HETATM 52 O O2P FAD . . . C 2 -28.953 -58.896 -6.25 1 88.97 ? O2P FAD 500 A 1 
HETATM 53 O O3P FAD . . . C 2 -30.179 -57.768 -8.188 1 88.97 ? O3P FAD 500 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           405 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#