data_2YAU
#
_model_server_result.job_id            WgoBf4Gckoi336DzpU2a9g 
_model_server_result.datetime_utc      '2024-11-17 10:23:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yau 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":550}' 
#
_entry.id    2YAU 
#
_exptl.entry_id    2YAU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YAU 
_cell.length_a            103.058 
_cell.length_b            103.058 
_cell.length_c            191.604 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YAU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 109 A CYS 89 1_555 A SG CYS 233 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 B SG CYS 109 B CYS 89 1_555 B SG CYS 233 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 A SG CYS 72 A CYS 52 1_555 E AU AU . A AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc2 A SG CYS 77 A CYS 57 1_555 E AU AU . A AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 E AU AU . A AU 600 1_555 G CL CL . A CL 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc4 B SG CYS 72 B CYS 52 1_555 K AU AU . B AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc5 B SG CYS 77 B CYS 57 1_555 K AU AU . B AU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc6 K AU AU . B AU 600 1_555 M CL CL . B CL 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 326 n n 
PA O2A NDP sing 327 n n 
PA O5B NDP sing 328 n n 
PA O3 NDP sing 329 n n 
O2A HOA2 NDP sing 330 n n 
O5B C5B NDP sing 331 n n 
C5B C4B NDP sing 332 n n 
C5B H51A NDP sing 333 n n 
C5B H52A NDP sing 334 n n 
C4B O4B NDP sing 335 n n 
C4B C3B NDP sing 336 n n 
C4B H4B NDP sing 337 n n 
O4B C1B NDP sing 338 n n 
C3B O3B NDP sing 339 n n 
C3B C2B NDP sing 340 n n 
C3B H3B NDP sing 341 n n 
O3B HO3A NDP sing 342 n n 
C2B O2B NDP sing 343 n n 
C2B C1B NDP sing 344 n n 
C2B H2B NDP sing 345 n n 
O2B P2B NDP sing 346 n n 
C1B N9A NDP sing 347 n n 
C1B H1B NDP sing 348 n n 
N9A C8A NDP sing 349 n y 
N9A C4A NDP sing 350 n y 
C8A N7A NDP doub 351 n y 
C8A H8A NDP sing 352 n n 
N7A C5A NDP sing 353 n y 
C5A C6A NDP sing 354 n y 
C5A C4A NDP doub 355 n y 
C6A N6A NDP sing 356 n n 
C6A N1A NDP doub 357 n y 
N6A H61A NDP sing 358 n n 
N6A H62A NDP sing 359 n n 
N1A C2A NDP sing 360 n y 
C2A N3A NDP doub 361 n y 
C2A H2A NDP sing 362 n n 
N3A C4A NDP sing 363 n y 
O3 PN NDP sing 364 n n 
PN O1N NDP doub 365 n n 
PN O2N NDP sing 366 n n 
PN O5D NDP sing 367 n n 
O2N H21N NDP sing 368 n n 
O5D C5D NDP sing 369 n n 
C5D C4D NDP sing 370 n n 
C5D H51N NDP sing 371 n n 
C5D H52N NDP sing 372 n n 
C4D O4D NDP sing 373 n n 
C4D C3D NDP sing 374 n n 
C4D H4D NDP sing 375 n n 
O4D C1D NDP sing 376 n n 
C3D O3D NDP sing 377 n n 
C3D C2D NDP sing 378 n n 
C3D H3D NDP sing 379 n n 
O3D HO3N NDP sing 380 n n 
C2D O2D NDP sing 381 n n 
C2D C1D NDP sing 382 n n 
C2D H2D NDP sing 383 n n 
O2D HO2N NDP sing 384 n n 
C1D N1N NDP sing 385 n n 
C1D H1D NDP sing 386 n n 
N1N C2N NDP sing 387 n n 
N1N C6N NDP sing 388 n n 
C2N C3N NDP doub 389 n n 
C2N H2N NDP sing 390 n n 
C3N C7N NDP sing 391 n n 
C3N C4N NDP sing 392 n n 
C7N O7N NDP doub 393 n n 
C7N N7N NDP sing 394 n n 
N7N H71N NDP sing 395 n n 
N7N H72N NDP sing 396 n n 
C4N C5N NDP sing 397 n n 
C4N H41N NDP sing 398 n n 
C4N H42N NDP sing 399 n n 
C5N C6N NDP doub 400 n n 
C5N H5N NDP sing 401 n n 
C6N H6N NDP sing 402 n n 
P2B O1X NDP doub 403 n n 
P2B O2X NDP sing 404 n n 
P2B O3X NDP sing 405 n n 
O2X HOP2 NDP sing 406 n n 
O3X HOP3 NDP sing 407 n n 
#
_atom_sites.entry_id                     2YAU 
_atom_sites.fract_transf_matrix[1][1]    0.009703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009703 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 500 500 FAD FAD . 
D 3 NDP A 1 550 550 NDP NDP . 
E 4 AU A 1 600 600 AU AU . 
F 5 TS8 A 1 650 650 TS8 TS8 . 
G 6 CL A 1 1489 1489 CL CL . 
H 7 SO4 A 1 1490 1490 SO4 SO4 . 
I 2 FAD B 1 500 500 FAD FAD . 
J 3 NDP B 1 550 550 NDP NDP . 
K 4 AU B 1 600 600 AU AU . 
L 5 TS8 B 1 650 650 TS8 TS8 . 
M 6 CL B 1 1489 1489 CL CL . 
N 7 SO4 B 1 1490 1490 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . J 3 2.889 -20.428 -8.106 1 60 ? PA NDP 550 B 1 
HETATM 2 O O1A NDP . . . J 3 1.911 -21.751 -8.092 1 60 ? O1A NDP 550 B 1 
HETATM 3 O O2A NDP . . . J 3 4.176 -20.573 -7.365 1 60 ? O2A NDP 550 B 1 
HETATM 4 O O5B NDP . . . J 3 3.147 -20.088 -9.647 1 60 ? O5B NDP 550 B 1 
HETATM 5 C C5B NDP . . . J 3 3.053 -18.725 -10.091 1 60 ? C5B NDP 550 B 1 
HETATM 6 C C4B NDP . . . J 3 2.096 -18.576 -11.289 1 60 ? C4B NDP 550 B 1 
HETATM 7 O O4B NDP . . . J 3 2.096 -17.18 -11.753 1 60 ? O4B NDP 550 B 1 
HETATM 8 C C3B NDP . . . J 3 2.652 -19.456 -12.423 1 60 ? C3B NDP 550 B 1 
HETATM 9 O O3B NDP . . . J 3 1.597 -20.068 -13.199 1 60 ? O3B NDP 550 B 1 
HETATM 10 C C2B NDP . . . J 3 3.482 -18.464 -13.24 1 60 ? C2B NDP 550 B 1 
HETATM 11 O O2B NDP . . . J 3 3.484 -18.823 -14.614 1 60 ? O2B NDP 550 B 1 
HETATM 12 C C1B NDP . . . J 3 2.765 -17.125 -13.052 1 60 ? C1B NDP 550 B 1 
HETATM 13 N N9A NDP . . . J 3 3.787 -16.05 -13.051 1 60 ? N9A NDP 550 B 1 
HETATM 14 C C8A NDP . . . J 3 4.962 -16.106 -12.421 1 60 ? C8A NDP 550 B 1 
HETATM 15 N N7A NDP . . . J 3 5.63 -14.971 -12.634 1 60 ? N7A NDP 550 B 1 
HETATM 16 C C5A NDP . . . J 3 4.879 -14.184 -13.401 1 60 ? C5A NDP 550 B 1 
HETATM 17 C C6A NDP . . . J 3 5.05 -12.902 -13.936 1 60 ? C6A NDP 550 B 1 
HETATM 18 N N6A NDP . . . J 3 6.166 -12.208 -13.693 1 60 ? N6A NDP 550 B 1 
HETATM 19 N N1A NDP . . . J 3 4.064 -12.374 -14.694 1 60 ? N1A NDP 550 B 1 
HETATM 20 C C2A NDP . . . J 3 2.947 -13.062 -14.939 1 60 ? C2A NDP 550 B 1 
HETATM 21 N N3A NDP . . . J 3 2.758 -14.288 -14.442 1 60 ? N3A NDP 550 B 1 
HETATM 22 C C4A NDP . . . J 3 3.701 -14.872 -13.671 1 60 ? C4A NDP 550 B 1 
HETATM 23 O O3 NDP . . . J 3 1.991 -19.17 -7.524 1 60 ? O3 NDP 550 B 1 
HETATM 24 P PN NDP . . . J 3 1.417 -18.973 -6.001 1 60 ? PN NDP 550 B 1 
HETATM 25 O O1N NDP . . . J 3 1.386 -17.339 -5.779 1 60 ? O1N NDP 550 B 1 
HETATM 26 O O2N NDP . . . J 3 0.066 -19.584 -5.847 1 60 ? O2N NDP 550 B 1 
HETATM 27 O O5D NDP . . . J 3 2.525 -19.546 -4.915 1 60 ? O5D NDP 550 B 1 
HETATM 28 C C5D NDP . . . J 3 2.134 -19.877 -3.549 1 60 ? C5D NDP 550 B 1 
HETATM 29 C C4D NDP . . . J 3 2.53 -21.313 -3.107 1 60 ? C4D NDP 550 B 1 
HETATM 30 O O4D NDP . . . J 3 1.937 -21.587 -1.789 1 60 ? O4D NDP 550 B 1 
HETATM 31 C C3D NDP . . . J 3 1.956 -22.388 -4.047 1 60 ? C3D NDP 550 B 1 
HETATM 32 O O3D NDP . . . J 3 2.893 -22.74 -5.077 1 60 ? O3D NDP 550 B 1 
HETATM 33 C C2D NDP . . . J 3 1.778 -23.586 -3.126 1 60 ? C2D NDP 550 B 1 
HETATM 34 O O2D NDP . . . J 3 3.023 -24.288 -2.946 1 60 ? O2D NDP 550 B 1 
HETATM 35 C C1D NDP . . . J 3 1.314 -22.928 -1.826 1 60 ? C1D NDP 550 B 1 
HETATM 36 N N1N NDP . . . J 3 -0.183 -22.932 -1.859 1 60 ? N1N NDP 550 B 1 
HETATM 37 C C2N NDP . . . J 3 -0.885 -24.134 -1.634 1 60 ? C2N NDP 550 B 1 
HETATM 38 C C3N NDP . . . J 3 -2.283 -24.169 -1.657 1 60 ? C3N NDP 550 B 1 
HETATM 39 C C7N NDP . . . J 3 -3.057 -25.504 -1.417 1 60 ? C7N NDP 550 B 1 
HETATM 40 O O7N NDP . . . J 3 -4.292 -25.54 -1.432 1 60 ? O7N NDP 550 B 1 
HETATM 41 N N7N NDP . . . J 3 -2.3 -26.589 -1.209 1 60 ? N7N NDP 550 B 1 
HETATM 42 C C4N NDP . . . J 3 -3.085 -22.871 -1.901 1 60 ? C4N NDP 550 B 1 
HETATM 43 C C5N NDP . . . J 3 -2.296 -21.731 -2.096 1 60 ? C5N NDP 550 B 1 
HETATM 44 C C6N NDP . . . J 3 -0.903 -21.746 -2.079 1 60 ? C6N NDP 550 B 1 
HETATM 45 P P2B NDP . . . J 3 4.537 -19.899 -15.148 1 60 ? P2B NDP 550 B 1 
HETATM 46 O O1X NDP . . . J 3 5.024 -19.233 -16.543 1 60 ? O1X NDP 550 B 1 
HETATM 47 O O2X NDP . . . J 3 5.82 -19.819 -14.157 1 60 ? O2X NDP 550 B 1 
HETATM 48 O O3X NDP . . . J 3 3.976 -21.265 -15.282 1 60 ? O3X NDP 550 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#