data_2YAZ # _model_server_result.job_id vy7ENMtOxo-yQ4vUr1bf0g _model_server_result.datetime_utc '2024-11-05 00:15:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yaz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1267}' # _entry.id 2YAZ # _exptl.entry_id 2YAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YAZ _cell.length_a 109.11 _cell.length_b 109.11 _cell.length_c 309.311 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,P,Q 1 1 C,D,J,K,L,M,N,O,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 51 A GLU 48 1_555 G MG MG . A MG 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc2 A OE1 GLU 79 A GLU 76 1_555 G MG MG . A MG 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A OE2 GLU 79 A GLU 76 1_555 G MG MG . A MG 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc4 A OD2 ASP 82 A ASP 79 1_555 G MG MG . A MG 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 C OD2 ASP 82 D ASP 79 1_555 K MG MG . D MG 1266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 D OE1 GLU 51 E GLU 48 1_555 O MG MG . E MG 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc7 D OE2 GLU 79 E GLU 76 1_555 O MG MG . E MG 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc8 N OP3 UMP . E UMP 1266 1_555 O MG MG . E MG 1267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YAZ _atom_sites.fract_transf_matrix[1][1] 0.009165 _atom_sites.fract_transf_matrix[1][2] 0.005291 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UMP A 1 1265 1265 UMP UMP . F 3 SO4 A 1 1266 1266 SO4 SO4 . G 4 MG A 1 1267 1267 MG MG . H 3 SO4 A 1 1268 1268 SO4 SO4 . I 2 UMP B 1 1265 1265 UMP UMP . J 2 UMP D 1 1265 1265 UMP UMP . K 4 MG D 1 1266 1266 MG MG . L 3 SO4 D 1 1267 1267 SO4 SO4 . M 3 SO4 E 1 1265 1265 SO4 SO4 . N 2 UMP E 1 1266 1266 UMP UMP . O 4 MG E 1 1267 1267 MG MG . P 5 HOH A 1 2001 2001 HOH HOH . P 5 HOH A 2 2002 2002 HOH HOH . P 5 HOH A 3 2003 2003 HOH HOH . P 5 HOH A 4 2004 2004 HOH HOH . P 5 HOH A 5 2005 2005 HOH HOH . P 5 HOH A 6 2006 2006 HOH HOH . P 5 HOH A 7 2007 2007 HOH HOH . P 5 HOH A 8 2008 2008 HOH HOH . P 5 HOH A 9 2009 2009 HOH HOH . P 5 HOH A 10 2010 2010 HOH HOH . P 5 HOH A 11 2011 2011 HOH HOH . P 5 HOH A 12 2012 2012 HOH HOH . Q 5 HOH B 1 2001 2001 HOH HOH . Q 5 HOH B 2 2002 2002 HOH HOH . Q 5 HOH B 3 2003 2003 HOH HOH . Q 5 HOH B 4 2004 2004 HOH HOH . Q 5 HOH B 5 2005 2005 HOH HOH . Q 5 HOH B 6 2006 2006 HOH HOH . R 5 HOH D 1 2001 2001 HOH HOH . R 5 HOH D 2 2002 2002 HOH HOH . R 5 HOH D 3 2003 2003 HOH HOH . R 5 HOH D 4 2004 2004 HOH HOH . R 5 HOH D 5 2005 2005 HOH HOH . R 5 HOH D 6 2006 2006 HOH HOH . R 5 HOH D 7 2007 2007 HOH HOH . R 5 HOH D 8 2008 2008 HOH HOH . R 5 HOH D 9 2009 2009 HOH HOH . R 5 HOH D 10 2010 2010 HOH HOH . R 5 HOH D 11 2011 2011 HOH HOH . S 5 HOH E 1 2001 2001 HOH HOH . S 5 HOH E 2 2002 2002 HOH HOH . S 5 HOH E 3 2003 2003 HOH HOH . S 5 HOH E 4 2004 2004 HOH HOH . S 5 HOH E 5 2005 2005 HOH HOH . S 5 HOH E 6 2006 2006 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x -45.257 _atom_site.Cartn_y 34.726 _atom_site.Cartn_z -38.94 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1267 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #