data_2YCJ
#
_model_server_result.job_id            7JvNvGlk7w0I-7cuYaRVBA 
_model_server_result.datetime_utc      '2024-11-24 06:21:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ycj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3000}' 
#
_entry.id    2YCJ 
#
_exptl.entry_id    2YCJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.456 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YCJ 
_cell.length_a            64.702 
_cell.length_b            64.702 
_cell.length_c            177.302 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YCJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H25 N7 O6' 
_chem_comp.formula_weight    459.456 
_chem_comp.id                C2F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 C2F doub 70 n y 
N1 C8A C2F sing 71 n y 
C2 NA2 C2F sing 72 n n 
C2 N3 C2F sing 73 n y 
NA2 HN21 C2F sing 74 n n 
NA2 HN22 C2F sing 75 n n 
N3 C4 C2F sing 76 n y 
N3 HN3 C2F sing 77 n n 
C4 O4 C2F doub 78 n n 
C4 C4A C2F sing 79 n y 
C4A N5 C2F sing 80 n n 
C4A C8A C2F doub 81 n y 
N5 C6 C2F sing 82 n n 
N5 C11 C2F sing 83 n n 
C6 C7 C2F sing 84 n n 
C6 C9 C2F sing 85 n n 
C6 H6 C2F sing 86 n n 
C7 N8 C2F sing 87 n n 
C7 H71 C2F sing 88 n n 
C7 H72 C2F sing 89 n n 
N8 C8A C2F sing 90 n n 
N8 HN8 C2F sing 91 n n 
C9 N10 C2F sing 92 n n 
C9 H91 C2F sing 93 n n 
C9 H92 C2F sing 94 n n 
N10 C15 C2F sing 95 n n 
N10 HN1 C2F sing 96 n n 
C11 H111 C2F sing 97 n n 
C11 H112 C2F sing 98 n n 
C11 H113 C2F sing 99 n n 
C12 C13 C2F doub 100 n y 
C12 C17 C2F sing 101 n y 
C12 C C2F sing 102 n n 
C13 C14 C2F sing 103 n y 
C13 H13 C2F sing 104 n n 
C14 C15 C2F doub 105 n y 
C14 H14 C2F sing 106 n n 
C15 C16 C2F sing 107 n y 
C16 C17 C2F doub 108 n y 
C16 H16 C2F sing 109 n n 
C17 H17 C2F sing 110 n n 
C O C2F doub 111 n n 
C N C2F sing 112 n n 
N CA C2F sing 113 n n 
N HN C2F sing 114 n n 
CA CB C2F sing 115 n n 
CA CT C2F sing 116 n n 
CA HA C2F sing 117 n n 
CB CG C2F sing 118 n n 
CB HB1 C2F sing 119 n n 
CB HB2 C2F sing 120 n n 
CG CD C2F sing 121 n n 
CG HG1 C2F sing 122 n n 
CG HG2 C2F sing 123 n n 
CD OE1 C2F doub 124 n n 
CD OE2 C2F sing 125 n n 
OE2 HOE2 C2F sing 126 n n 
CT O1 C2F doub 127 n n 
CT O2 C2F sing 128 n n 
O2 HO2 C2F sing 129 n n 
#
_atom_sites.entry_id                     2YCJ 
_atom_sites.fract_transf_matrix[1][1]    0.015455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1264 1264 SO4 SO4 . 
C 2 SO4 A 1 1265 1265 SO4 SO4 . 
D 2 SO4 A 1 1266 1266 SO4 SO4 . 
E 2 SO4 A 1 1267 1267 SO4 SO4 . 
F 3 GOL A 1 1268 1268 GOL GOL . 
G 3 GOL A 1 1269 1269 GOL GOL . 
H 3 GOL A 1 1270 1270 GOL GOL . 
I 2 SO4 A 1 1271 1271 SO4 SO4 . 
J 4 C2F A 1 3000 3000 C2F C2F . 
K 5 HOH A 1 2001 2001 HOH HOH . 
K 5 HOH A 2 2002 2002 HOH HOH . 
K 5 HOH A 3 2003 2003 HOH HOH . 
K 5 HOH A 4 2004 2004 HOH HOH . 
K 5 HOH A 5 2005 2005 HOH HOH . 
K 5 HOH A 6 2006 2006 HOH HOH . 
K 5 HOH A 7 2007 2007 HOH HOH . 
K 5 HOH A 8 2008 2008 HOH HOH . 
K 5 HOH A 9 2009 2009 HOH HOH . 
K 5 HOH A 10 2010 2010 HOH HOH . 
K 5 HOH A 11 2011 2011 HOH HOH . 
K 5 HOH A 12 2012 2012 HOH HOH . 
K 5 HOH A 13 2013 2013 HOH HOH . 
K 5 HOH A 14 2014 2014 HOH HOH . 
K 5 HOH A 15 2015 2015 HOH HOH . 
K 5 HOH A 16 2016 2016 HOH HOH . 
K 5 HOH A 17 2017 2017 HOH HOH . 
K 5 HOH A 18 2018 2018 HOH HOH . 
K 5 HOH A 19 2019 2019 HOH HOH . 
K 5 HOH A 20 2020 2020 HOH HOH . 
K 5 HOH A 21 2021 2021 HOH HOH . 
K 5 HOH A 22 2022 2022 HOH HOH . 
K 5 HOH A 23 2023 2023 HOH HOH . 
K 5 HOH A 24 2024 2024 HOH HOH . 
K 5 HOH A 25 2025 2025 HOH HOH . 
K 5 HOH A 26 2026 2026 HOH HOH . 
K 5 HOH A 27 2027 2027 HOH HOH . 
K 5 HOH A 28 2028 2028 HOH HOH . 
K 5 HOH A 29 2029 2029 HOH HOH . 
K 5 HOH A 30 2030 2030 HOH HOH . 
K 5 HOH A 31 2031 2031 HOH HOH . 
K 5 HOH A 32 2032 2032 HOH HOH . 
K 5 HOH A 33 2033 2033 HOH HOH . 
K 5 HOH A 34 2034 2034 HOH HOH . 
K 5 HOH A 35 2035 2035 HOH HOH . 
K 5 HOH A 36 2036 2036 HOH HOH . 
K 5 HOH A 37 2037 2037 HOH HOH . 
K 5 HOH A 38 2038 2038 HOH HOH . 
K 5 HOH A 39 2039 2039 HOH HOH . 
K 5 HOH A 40 2040 2040 HOH HOH . 
K 5 HOH A 41 2041 2041 HOH HOH . 
K 5 HOH A 42 2042 2042 HOH HOH . 
K 5 HOH A 43 2043 2043 HOH HOH . 
K 5 HOH A 44 2044 2044 HOH HOH . 
K 5 HOH A 45 2045 2045 HOH HOH . 
K 5 HOH A 46 2046 2046 HOH HOH . 
K 5 HOH A 47 2047 2047 HOH HOH . 
K 5 HOH A 48 2048 2048 HOH HOH . 
K 5 HOH A 49 2049 2049 HOH HOH . 
K 5 HOH A 50 2050 2050 HOH HOH . 
K 5 HOH A 51 2051 2051 HOH HOH . 
K 5 HOH A 52 2052 2052 HOH HOH . 
K 5 HOH A 53 2053 2053 HOH HOH . 
K 5 HOH A 54 2054 2054 HOH HOH . 
K 5 HOH A 55 2055 2055 HOH HOH . 
K 5 HOH A 56 2056 2056 HOH HOH . 
K 5 HOH A 57 2057 2057 HOH HOH . 
K 5 HOH A 58 2058 2058 HOH HOH . 
K 5 HOH A 59 2059 2059 HOH HOH . 
K 5 HOH A 60 2060 2060 HOH HOH . 
K 5 HOH A 61 2061 2061 HOH HOH . 
K 5 HOH A 62 2062 2062 HOH HOH . 
K 5 HOH A 63 2063 2063 HOH HOH . 
K 5 HOH A 64 2064 2064 HOH HOH . 
K 5 HOH A 65 2065 2065 HOH HOH . 
K 5 HOH A 66 2066 2066 HOH HOH . 
K 5 HOH A 67 2067 2067 HOH HOH . 
K 5 HOH A 68 2068 2068 HOH HOH . 
K 5 HOH A 69 2069 2069 HOH HOH . 
K 5 HOH A 70 2070 2070 HOH HOH . 
K 5 HOH A 71 2071 2071 HOH HOH . 
K 5 HOH A 72 2072 2072 HOH HOH . 
K 5 HOH A 73 2073 2073 HOH HOH . 
K 5 HOH A 74 2074 2074 HOH HOH . 
K 5 HOH A 75 2075 2075 HOH HOH . 
K 5 HOH A 76 2076 2076 HOH HOH . 
K 5 HOH A 77 2077 2077 HOH HOH . 
K 5 HOH A 78 2078 2078 HOH HOH . 
K 5 HOH A 79 2079 2079 HOH HOH . 
K 5 HOH A 80 2080 2080 HOH HOH . 
K 5 HOH A 81 2081 2081 HOH HOH . 
K 5 HOH A 82 2082 2082 HOH HOH . 
K 5 HOH A 83 2083 2083 HOH HOH . 
K 5 HOH A 84 2084 2084 HOH HOH . 
K 5 HOH A 85 2085 2085 HOH HOH . 
K 5 HOH A 86 2086 2086 HOH HOH . 
K 5 HOH A 87 2087 2087 HOH HOH . 
K 5 HOH A 88 2088 2088 HOH HOH . 
K 5 HOH A 89 2089 2089 HOH HOH . 
K 5 HOH A 90 2090 2090 HOH HOH . 
K 5 HOH A 91 2091 2091 HOH HOH . 
K 5 HOH A 92 2092 2092 HOH HOH . 
K 5 HOH A 93 2093 2093 HOH HOH . 
K 5 HOH A 94 2094 2094 HOH HOH . 
K 5 HOH A 95 2095 2095 HOH HOH . 
K 5 HOH A 96 2096 2096 HOH HOH . 
K 5 HOH A 97 2097 2097 HOH HOH . 
K 5 HOH A 98 2098 2098 HOH HOH . 
K 5 HOH A 99 2099 2099 HOH HOH . 
K 5 HOH A 100 2100 2100 HOH HOH . 
K 5 HOH A 101 2101 2101 HOH HOH . 
K 5 HOH A 102 2102 2102 HOH HOH . 
K 5 HOH A 103 2103 2103 HOH HOH . 
K 5 HOH A 104 2104 2104 HOH HOH . 
K 5 HOH A 105 2105 2105 HOH HOH . 
K 5 HOH A 106 2106 2106 HOH HOH . 
K 5 HOH A 107 2107 2107 HOH HOH . 
K 5 HOH A 108 2108 2108 HOH HOH . 
K 5 HOH A 109 2109 2109 HOH HOH . 
K 5 HOH A 110 2110 2110 HOH HOH . 
K 5 HOH A 111 2111 2111 HOH HOH . 
K 5 HOH A 112 2112 2112 HOH HOH . 
K 5 HOH A 113 2113 2113 HOH HOH . 
K 5 HOH A 114 2114 2114 HOH HOH . 
K 5 HOH A 115 2115 2115 HOH HOH . 
K 5 HOH A 116 2116 2116 HOH HOH . 
K 5 HOH A 117 2117 2117 HOH HOH . 
K 5 HOH A 118 2118 2118 HOH HOH . 
K 5 HOH A 119 2119 2119 HOH HOH . 
K 5 HOH A 120 2120 2120 HOH HOH . 
K 5 HOH A 121 2121 2121 HOH HOH . 
K 5 HOH A 122 2122 2122 HOH HOH . 
K 5 HOH A 123 2123 2123 HOH HOH . 
K 5 HOH A 124 2124 2124 HOH HOH . 
K 5 HOH A 125 2125 2125 HOH HOH . 
K 5 HOH A 126 2126 2126 HOH HOH . 
K 5 HOH A 127 2127 2127 HOH HOH . 
K 5 HOH A 128 2128 2128 HOH HOH . 
K 5 HOH A 129 2129 2129 HOH HOH . 
K 5 HOH A 130 2130 2130 HOH HOH . 
K 5 HOH A 131 2131 2131 HOH HOH . 
K 5 HOH A 132 2132 2132 HOH HOH . 
K 5 HOH A 133 2133 2133 HOH HOH . 
K 5 HOH A 134 2134 2134 HOH HOH . 
K 5 HOH A 135 2135 2135 HOH HOH . 
K 5 HOH A 136 2136 2136 HOH HOH . 
K 5 HOH A 137 2137 2137 HOH HOH . 
K 5 HOH A 138 2138 2138 HOH HOH . 
K 5 HOH A 139 2139 2139 HOH HOH . 
K 5 HOH A 140 2140 2140 HOH HOH . 
K 5 HOH A 141 2141 2141 HOH HOH . 
K 5 HOH A 142 2142 2142 HOH HOH . 
K 5 HOH A 143 2143 2143 HOH HOH . 
K 5 HOH A 144 2144 2144 HOH HOH . 
K 5 HOH A 145 2145 2145 HOH HOH . 
K 5 HOH A 146 2146 2146 HOH HOH . 
K 5 HOH A 147 2147 2147 HOH HOH . 
K 5 HOH A 148 2148 2148 HOH HOH . 
K 5 HOH A 149 2149 2149 HOH HOH . 
K 5 HOH A 150 2150 2150 HOH HOH . 
K 5 HOH A 151 2151 2151 HOH HOH . 
K 5 HOH A 152 2152 2152 HOH HOH . 
K 5 HOH A 153 2153 2153 HOH HOH . 
K 5 HOH A 154 2154 2154 HOH HOH . 
K 5 HOH A 155 2155 2155 HOH HOH . 
K 5 HOH A 156 2156 2156 HOH HOH . 
K 5 HOH A 157 2157 2157 HOH HOH . 
K 5 HOH A 158 2158 2158 HOH HOH . 
K 5 HOH A 159 2159 2159 HOH HOH . 
K 5 HOH A 160 2160 2160 HOH HOH . 
K 5 HOH A 161 2161 2161 HOH HOH . 
K 5 HOH A 162 2162 2162 HOH HOH . 
K 5 HOH A 163 2163 2163 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 C2F . . . J 4 -10.077 0.993 -20.057 0.81 32.5 ? N1 C2F 3000 A 1 
HETATM 2 C C2 C2F . . . J 4 -10.78 0.174 -19.237 0.81 33.65 ? C2 C2F 3000 A 1 
HETATM 3 N NA2 C2F . . . J 4 -10.962 -1.12 -19.596 0.81 26.91 ? NA2 C2F 3000 A 1 
HETATM 4 N N3 C2F . . . J 4 -11.304 0.592 -18.073 0.81 36.22 ? N3 C2F 3000 A 1 
HETATM 5 C C4 C2F . . . J 4 -11.176 1.852 -17.65 0.81 31.53 ? C4 C2F 3000 A 1 
HETATM 6 O O4 C2F . . . J 4 -11.698 2.175 -16.561 0.81 39.53 ? O4 C2F 3000 A 1 
HETATM 7 C C4A C2F . . . J 4 -10.418 2.819 -18.488 0.81 36.93 ? C4A C2F 3000 A 1 
HETATM 8 N N5 C2F . . . J 4 -10.245 4.171 -18.111 0.81 37.49 ? N5 C2F 3000 A 1 
HETATM 9 C C6 C2F . . . J 4 -9.088 4.776 -18.789 0.81 38.65 ? C6 C2F 3000 A 1 
HETATM 10 C C7 C2F . . . J 4 -9.075 4.504 -20.3 0.81 37.63 ? C7 C2F 3000 A 1 
HETATM 11 N N8 C2F . . . J 4 -9.156 3.082 -20.588 0.81 35.19 ? N8 C2F 3000 A 1 
HETATM 12 C C8A C2F . . . J 4 -9.861 2.289 -19.755 0.81 35.09 ? C8A C2F 3000 A 1 
HETATM 13 C C9 C2F . . . J 4 -7.799 4.279 -18.137 0.81 43.94 ? C9 C2F 3000 A 1 
HETATM 14 N N10 C2F . . . J 4 -6.71 5.143 -18.553 0.81 41.25 ? N10 C2F 3000 A 1 
HETATM 15 C C11 C2F . . . J 4 -11.443 4.948 -18.458 0.81 32.08 ? C11 C2F 3000 A 1 
HETATM 16 C C12 C2F . . . J 4 -5.92 8.77 -16.688 0.81 40.62 ? C12 C2F 3000 A 1 
HETATM 17 C C13 C2F . . . J 4 -6.926 7.95 -16.184 0.81 40.77 ? C13 C2F 3000 A 1 
HETATM 18 C C14 C2F . . . J 4 -7.196 6.732 -16.809 0.81 37.44 ? C14 C2F 3000 A 1 
HETATM 19 C C15 C2F . . . J 4 -6.467 6.33 -17.93 0.81 35.73 ? C15 C2F 3000 A 1 
HETATM 20 C C16 C2F . . . J 4 -5.466 7.155 -18.429 0.81 31.21 ? C16 C2F 3000 A 1 
HETATM 21 C C17 C2F . . . J 4 -5.205 8.368 -17.811 0.81 40.75 ? C17 C2F 3000 A 1 
HETATM 22 C C C2F . . . J 4 -5.6 10.097 -16.047 0.81 44.82 ? C C2F 3000 A 1 
HETATM 23 O O C2F . . . J 4 -5.348 10.141 -14.858 0.81 41.74 ? O C2F 3000 A 1 
HETATM 24 N N C2F . . . J 4 -5.597 11.201 -16.806 0.81 49.6 ? N C2F 3000 A 1 
HETATM 25 C CA C2F . . . J 4 -4.913 12.441 -16.452 0.81 48.12 ? CA C2F 3000 A 1 
HETATM 26 C CB C2F . . . J 4 -4.624 13.227 -17.732 0.81 41.37 ? CB C2F 3000 A 1 
HETATM 27 C CG C2F . . . J 4 -3.568 14.309 -17.526 0.81 47.25 ? CG C2F 3000 A 1 
HETATM 28 C CD C2F . . . J 4 -3.558 15.254 -18.709 0.81 43.34 ? CD C2F 3000 A 1 
HETATM 29 O OE1 C2F . . . J 4 -2.487 15.829 -19.018 0.81 53.28 ? OE1 C2F 3000 A 1 
HETATM 30 O OE2 C2F . . . J 4 -4.623 15.43 -19.346 0.81 50.05 ? OE2 C2F 3000 A 1 
HETATM 31 C CT C2F . . . J 4 -5.71 13.303 -15.506 0.81 45.87 ? CT C2F 3000 A 1 
HETATM 32 O O1 C2F . . . J 4 -5.121 13.871 -14.556 0.81 50.99 ? O1 C2F 3000 A 1 
HETATM 33 O O2 C2F . . . J 4 -6.942 13.431 -15.7 0.81 43.89 ? O2 C2F 3000 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#