data_2YCK
#
_model_server_result.job_id            uUOyg-nnlYaJx0Q4eZ9f9w 
_model_server_result.datetime_utc      '2025-07-18 19:55:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yck 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":7216}' 
#
_entry.id    2YCK 
#
_exptl.entry_id    2YCK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              445.429 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6S)-5,6,7,8-TETRAHYDROFOLATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YCK 
_cell.length_a            63.955 
_cell.length_b            63.955 
_cell.length_c            175.095 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YCK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H23 N7 O6' 
_chem_comp.formula_weight    445.429 
_chem_comp.id                THG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6S)-5,6,7,8-TETRAHYDROFOLATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C2 THG sing 307 n y 
N3 C4 THG sing 308 n y 
N3 HN3 THG sing 309 n n 
C2 N1 THG doub 310 n y 
C2 N2 THG sing 311 n n 
N1 C8A THG sing 312 n y 
C8A C4A THG doub 313 n y 
C8A N8 THG sing 314 n n 
C4A C4 THG sing 315 n y 
C4A N5 THG sing 316 n n 
C4 O4 THG doub 317 n n 
N8 C7 THG sing 318 n n 
N8 HN8 THG sing 319 n n 
C7 C6 THG sing 320 n n 
C7 HC71 THG sing 321 n n 
C7 HC72 THG sing 322 n n 
C6 N5 THG sing 323 n n 
C6 C9 THG sing 324 n n 
C6 HC6 THG sing 325 n n 
N5 HN5 THG sing 326 n n 
C9 N10 THG sing 327 n n 
C9 HC91 THG sing 328 n n 
C9 HC92 THG sing 329 n n 
N10 C4' THG sing 330 n n 
N10 H10 THG sing 331 n n 
C4' C3' THG doub 332 n y 
C4' C5' THG sing 333 n y 
C3' C2' THG sing 334 n y 
C3' HC3 THG sing 335 n n 
C2' C1' THG doub 336 n y 
C2' HC2 THG sing 337 n n 
C1' C6' THG sing 338 n y 
C1' C11 THG sing 339 n n 
C6' C5' THG doub 340 n y 
C6' HC61 THG sing 341 n n 
C5' HC5 THG sing 342 n n 
C11 N THG sing 343 n n 
C11 O11 THG doub 344 n n 
N CA THG sing 345 n n 
N HN THG sing 346 n n 
CA C THG sing 347 n n 
CA CB THG sing 348 n n 
CA HCA THG sing 349 n n 
C OX2 THG sing 350 n n 
C OX1 THG doub 351 n n 
OX2 HX2 THG sing 352 n n 
CB CG THG sing 353 n n 
CB HCB1 THG sing 354 n n 
CB HCB2 THG sing 355 n n 
CG CD THG sing 356 n n 
CG HCG1 THG sing 357 n n 
CG HCG2 THG sing 358 n n 
CD OE1 THG doub 359 n n 
CD OE2 THG sing 360 n n 
OE2 HE2 THG sing 361 n n 
N2 HN21 THG sing 362 n n 
N2 HN22 THG sing 363 n n 
#
_atom_sites.entry_id                     2YCK 
_atom_sites.fract_transf_matrix[1][1]    0.015636 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015636 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 X 1 1264 1264 SO4 SO4 . 
C 2 SO4 X 1 1265 1265 SO4 SO4 . 
D 2 SO4 X 1 1266 1266 SO4 SO4 . 
E 2 SO4 X 1 1267 1267 SO4 SO4 . 
F 2 SO4 X 1 1268 1268 SO4 SO4 . 
G 2 SO4 X 1 1269 1269 SO4 SO4 . 
H 2 SO4 X 1 1270 1270 SO4 SO4 . 
I 3 GOL X 1 1271 1271 GOL GOL . 
J 4 THG X 1 7216 7216 THG THG . 
K 5 HOH X 1 2001 2001 HOH HOH . 
K 5 HOH X 2 2002 2002 HOH HOH . 
K 5 HOH X 3 2003 2003 HOH HOH . 
K 5 HOH X 4 2004 2004 HOH HOH . 
K 5 HOH X 5 2005 2005 HOH HOH . 
K 5 HOH X 6 2006 2006 HOH HOH . 
K 5 HOH X 7 2007 2007 HOH HOH . 
K 5 HOH X 8 2008 2008 HOH HOH . 
K 5 HOH X 9 2009 2009 HOH HOH . 
K 5 HOH X 10 2010 2010 HOH HOH . 
K 5 HOH X 11 2011 2011 HOH HOH . 
K 5 HOH X 12 2012 2012 HOH HOH . 
K 5 HOH X 13 2013 2013 HOH HOH . 
K 5 HOH X 14 2014 2014 HOH HOH . 
K 5 HOH X 15 2015 2015 HOH HOH . 
K 5 HOH X 16 2016 2016 HOH HOH . 
K 5 HOH X 17 2017 2017 HOH HOH . 
K 5 HOH X 18 2018 2018 HOH HOH . 
K 5 HOH X 19 2019 2019 HOH HOH . 
K 5 HOH X 20 2020 2020 HOH HOH . 
K 5 HOH X 21 2021 2021 HOH HOH . 
K 5 HOH X 22 2022 2022 HOH HOH . 
K 5 HOH X 23 2023 2023 HOH HOH . 
K 5 HOH X 24 2024 2024 HOH HOH . 
K 5 HOH X 25 2025 2025 HOH HOH . 
K 5 HOH X 26 2026 2026 HOH HOH . 
K 5 HOH X 27 2027 2027 HOH HOH . 
K 5 HOH X 28 2028 2028 HOH HOH . 
K 5 HOH X 29 2029 2029 HOH HOH . 
K 5 HOH X 30 2030 2030 HOH HOH . 
K 5 HOH X 31 2031 2031 HOH HOH . 
K 5 HOH X 32 2032 2032 HOH HOH . 
K 5 HOH X 33 2033 2033 HOH HOH . 
K 5 HOH X 34 2034 2034 HOH HOH . 
K 5 HOH X 35 2035 2035 HOH HOH . 
K 5 HOH X 36 2036 2036 HOH HOH . 
K 5 HOH X 37 2037 2037 HOH HOH . 
K 5 HOH X 38 2038 2038 HOH HOH . 
K 5 HOH X 39 2039 2039 HOH HOH . 
K 5 HOH X 40 2040 2040 HOH HOH . 
K 5 HOH X 41 2041 2041 HOH HOH . 
K 5 HOH X 42 2042 2042 HOH HOH . 
K 5 HOH X 43 2043 2043 HOH HOH . 
K 5 HOH X 44 2044 2044 HOH HOH . 
K 5 HOH X 45 2045 2045 HOH HOH . 
K 5 HOH X 46 2046 2046 HOH HOH . 
K 5 HOH X 47 2047 2047 HOH HOH . 
K 5 HOH X 48 2048 2048 HOH HOH . 
K 5 HOH X 49 2049 2049 HOH HOH . 
K 5 HOH X 50 2050 2050 HOH HOH . 
K 5 HOH X 51 2051 2051 HOH HOH . 
K 5 HOH X 52 2052 2052 HOH HOH . 
K 5 HOH X 53 2053 2053 HOH HOH . 
K 5 HOH X 54 2054 2054 HOH HOH . 
K 5 HOH X 55 2055 2055 HOH HOH . 
K 5 HOH X 56 2056 2056 HOH HOH . 
K 5 HOH X 57 2057 2057 HOH HOH . 
K 5 HOH X 58 2058 2058 HOH HOH . 
K 5 HOH X 59 2059 2059 HOH HOH . 
K 5 HOH X 60 2060 2060 HOH HOH . 
K 5 HOH X 61 2061 2061 HOH HOH . 
K 5 HOH X 62 2062 2062 HOH HOH . 
K 5 HOH X 63 2063 2063 HOH HOH . 
K 5 HOH X 64 2064 2064 HOH HOH . 
K 5 HOH X 65 2065 2065 HOH HOH . 
K 5 HOH X 66 2066 2066 HOH HOH . 
K 5 HOH X 67 2067 2067 HOH HOH . 
K 5 HOH X 68 2068 2068 HOH HOH . 
K 5 HOH X 69 2069 2069 HOH HOH . 
K 5 HOH X 70 2070 2070 HOH HOH . 
K 5 HOH X 71 2071 2071 HOH HOH . 
K 5 HOH X 72 2072 2072 HOH HOH . 
K 5 HOH X 73 2073 2073 HOH HOH . 
K 5 HOH X 74 2074 2074 HOH HOH . 
K 5 HOH X 75 2075 2075 HOH HOH . 
K 5 HOH X 76 2076 2076 HOH HOH . 
K 5 HOH X 77 2077 2077 HOH HOH . 
K 5 HOH X 78 2078 2078 HOH HOH . 
K 5 HOH X 79 2079 2079 HOH HOH . 
K 5 HOH X 80 2080 2080 HOH HOH . 
K 5 HOH X 81 2081 2081 HOH HOH . 
K 5 HOH X 82 2082 2082 HOH HOH . 
K 5 HOH X 83 2083 2083 HOH HOH . 
K 5 HOH X 84 2084 2084 HOH HOH . 
K 5 HOH X 85 2085 2085 HOH HOH . 
K 5 HOH X 86 2086 2086 HOH HOH . 
K 5 HOH X 87 2087 2087 HOH HOH . 
K 5 HOH X 88 2088 2088 HOH HOH . 
K 5 HOH X 89 2089 2089 HOH HOH . 
K 5 HOH X 90 2090 2090 HOH HOH . 
K 5 HOH X 91 2091 2091 HOH HOH . 
K 5 HOH X 92 2092 2092 HOH HOH . 
K 5 HOH X 93 2093 2093 HOH HOH . 
K 5 HOH X 94 2094 2094 HOH HOH . 
K 5 HOH X 95 2095 2095 HOH HOH . 
K 5 HOH X 96 2096 2096 HOH HOH . 
K 5 HOH X 97 2097 2097 HOH HOH . 
K 5 HOH X 98 2098 2098 HOH HOH . 
K 5 HOH X 99 2099 2099 HOH HOH . 
K 5 HOH X 100 2100 2100 HOH HOH . 
K 5 HOH X 101 2101 2101 HOH HOH . 
K 5 HOH X 102 2102 2102 HOH HOH . 
K 5 HOH X 103 2103 2103 HOH HOH . 
K 5 HOH X 104 2104 2104 HOH HOH . 
K 5 HOH X 105 2105 2105 HOH HOH . 
K 5 HOH X 106 2106 2106 HOH HOH . 
K 5 HOH X 107 2107 2107 HOH HOH . 
K 5 HOH X 108 2108 2108 HOH HOH . 
K 5 HOH X 109 2109 2109 HOH HOH . 
K 5 HOH X 110 2110 2110 HOH HOH . 
K 5 HOH X 111 2111 2111 HOH HOH . 
K 5 HOH X 112 2112 2112 HOH HOH . 
K 5 HOH X 113 2113 2113 HOH HOH . 
K 5 HOH X 114 2114 2114 HOH HOH . 
K 5 HOH X 115 2115 2115 HOH HOH . 
K 5 HOH X 116 2116 2116 HOH HOH . 
K 5 HOH X 117 2117 2117 HOH HOH . 
K 5 HOH X 118 2118 2118 HOH HOH . 
K 5 HOH X 119 2119 2119 HOH HOH . 
K 5 HOH X 120 2120 2120 HOH HOH . 
K 5 HOH X 121 2121 2121 HOH HOH . 
K 5 HOH X 122 2122 2122 HOH HOH . 
K 5 HOH X 123 2123 2123 HOH HOH . 
K 5 HOH X 124 2124 2124 HOH HOH . 
K 5 HOH X 125 2125 2125 HOH HOH . 
K 5 HOH X 126 2126 2126 HOH HOH . 
K 5 HOH X 127 2127 2127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 THG . . . J 4 -0.595 11.005 17.98 0.9 25.95 ? N3 THG 7216 X 1 
HETATM 2 C C2 THG . . . J 4 -0.228 10.539 19.177 0.9 26.69 ? C2 THG 7216 X 1 
HETATM 3 N N1 THG . . . J 4 -1.101 9.843 19.964 0.9 28.45 ? N1 THG 7216 X 1 
HETATM 4 C C8A THG . . . J 4 -2.387 9.623 19.521 0.9 31.1 ? C8A THG 7216 X 1 
HETATM 5 C C4A THG . . . J 4 -2.753 10.101 18.302 0.9 33.72 ? C4A THG 7216 X 1 
HETATM 6 C C4 THG . . . J 4 -1.823 10.801 17.515 0.9 31.06 ? C4 THG 7216 X 1 
HETATM 7 N N8 THG . . . J 4 -3.312 8.948 20.374 0.9 33.54 ? N8 THG 7216 X 1 
HETATM 8 C C7 THG . . . J 4 -4.72 8.878 20.008 0.9 30.48 ? C7 THG 7216 X 1 
HETATM 9 C C6 THG . . . J 4 -4.86 8.878 18.484 0.9 33.52 ? C6 THG 7216 X 1 
HETATM 10 N N5 THG . . . J 4 -4.073 9.884 17.799 0.9 34.54 ? N5 THG 7216 X 1 
HETATM 11 C C9 THG . . . J 4 -4.402 7.529 17.916 0.9 32.78 ? C9 THG 7216 X 1 
HETATM 12 N N10 THG . . . J 4 -5.274 6.468 18.396 0.9 40.18 ? N10 THG 7216 X 1 
HETATM 13 C C4' THG . . . J 4 -6.54 6.202 17.708 0.9 42.18 ? C4' THG 7216 X 1 
HETATM 14 C C3' THG . . . J 4 -6.934 6.987 16.619 0.9 38.82 ? C3' THG 7216 X 1 
HETATM 15 C C2' THG . . . J 4 -8.137 6.712 15.973 0.9 38.74 ? C2' THG 7216 X 1 
HETATM 16 C C1' THG . . . J 4 -8.928 5.66 16.4 0.9 41.62 ? C1' THG 7216 X 1 
HETATM 17 C C6' THG . . . J 4 -8.524 4.882 17.491 0.9 48.7 ? C6' THG 7216 X 1 
HETATM 18 C C5' THG . . . J 4 -7.322 5.158 18.139 0.9 43.25 ? C5' THG 7216 X 1 
HETATM 19 C C11 THG . . . J 4 -10.259 5.369 15.742 0.9 43.17 ? C11 THG 7216 X 1 
HETATM 20 N N THG . . . J 4 -11.418 5.113 16.59 0.9 49.32 ? N THG 7216 X 1 
HETATM 21 C CA THG . . . J 4 -12.72 4.675 16.075 0.9 53.39 ? CA THG 7216 X 1 
HETATM 22 C C THG . . . J 4 -13.419 5.715 15.293 0.9 47.19 ? C THG 7216 X 1 
HETATM 23 O OX2 THG . . . J 4 -14.179 5.394 14.336 0.9 45.49 ? OX2 THG 7216 X 1 
HETATM 24 O OX1 THG . . . J 4 -13.358 6.912 15.659 0.9 38.22 ? OX1 THG 7216 X 1 
HETATM 25 C CB THG . . . J 4 -13.61 4.265 17.254 0.9 51.87 ? CB THG 7216 X 1 
HETATM 26 C CG THG . . . J 4 -14.798 3.369 16.764 0.9 46.25 ? CG THG 7216 X 1 
HETATM 27 C CD THG . . . J 4 -15.541 2.851 17.952 0.9 46.92 ? CD THG 7216 X 1 
HETATM 28 O OE1 THG . . . J 4 -15.921 1.646 17.967 0.9 52.14 ? OE1 THG 7216 X 1 
HETATM 29 O OE2 THG . . . J 4 -15.71 3.591 18.951 0.9 44.56 ? OE2 THG 7216 X 1 
HETATM 30 O O11 THG . . . J 4 -10.416 5.628 14.58 0.9 39.15 ? O11 THG 7216 X 1 
HETATM 31 O O4 THG . . . J 4 -2.139 11.251 16.421 0.9 31.56 ? O4 THG 7216 X 1 
HETATM 32 N N2 THG . . . J 4 1.113 10.796 19.634 0.9 28.9 ? N2 THG 7216 X 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#