data_2YCQ # _model_server_result.job_id nOK_9L8yaid-7uLc58bVLg _model_server_result.datetime_utc '2024-12-22 01:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ycq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 2YCQ # _exptl.entry_id 2YCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(1E)-N-1H-IMIDAZOL-2-YLETHANEHYDRAZONOYL]PHENYL}-7-NITRO-1H-INDOLE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YCQ _cell.length_a 91.039 _cell.length_b 91.039 _cell.length_c 93.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 31.106667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H17 N7 O3' _chem_comp.formula_weight 403.394 _chem_comp.id UPX _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(1E)-N-1H-IMIDAZOL-2-YLETHANEHYDRAZONOYL]PHENYL}-7-NITRO-1H-INDOLE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBB NAB UPX sing 361 n n NAB OBC UPX doub 362 n n NAB CAJ UPX sing 363 n n CAJ CAI UPX sing 364 n y CAJ CAK UPX doub 365 n y CAI CAH UPX doub 366 n y CAH CAM UPX sing 367 n y CAM CAL UPX doub 368 n y CAL CAO UPX sing 369 n y CAL CAK UPX sing 370 n y CAO CAN UPX doub 371 n y CAK NAA UPX sing 372 n y NAA CAN UPX sing 373 n y CAN CAP UPX sing 374 n n CAP OBD UPX doub 375 n n CAP NAC UPX sing 376 n n NAC CAQ UPX sing 377 n n CAQ CAV UPX sing 378 n y CAQ CAR UPX doub 379 n y CAV CAU UPX doub 380 n y CAU CAT UPX sing 381 n y CAR CAS UPX sing 382 n y CAS CAT UPX doub 383 n y CAT CAW UPX sing 384 n n CAW CAX UPX sing 385 n n CAW NAD UPX doub 386 n n NAD NAE UPX sing 387 n n NAE CAY UPX sing 388 n n CAY NAF UPX sing 389 n y CAY NAG UPX doub 390 n y NAF CAZ UPX sing 391 n y CAZ CBA UPX doub 392 n y CBA NAG UPX sing 393 n y CAI HAI UPX sing 394 n n CAH HAH UPX sing 395 n n CAM HAM UPX sing 396 e n CAO HAO UPX sing 397 n n NAA HAA UPX sing 398 n n NAC HAC UPX sing 399 n n CAV HAV UPX sing 400 n n CAR HAR UPX sing 401 n n CAU HAU UPX sing 402 n n CAS HAS UPX sing 403 n n CAX HAX1 UPX sing 404 n n CAX HAX2 UPX sing 405 n n CAX HAX3 UPX sing 406 n n NAE HAE UPX sing 407 n n NAF HAF UPX sing 408 n n CAZ HAZ UPX sing 409 n n CBA HBA UPX sing 410 n n # _atom_sites.entry_id 2YCQ _atom_sites.fract_transf_matrix[1][1] 0.010984 _atom_sites.fract_transf_matrix[1][2] 0.006342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UPX A 1 600 600 UPX UPX . C 3 NO3 A 1 601 601 NO3 NO3 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . D 4 HOH A 146 2146 2146 HOH HOH . D 4 HOH A 147 2147 2147 HOH HOH . D 4 HOH A 148 2148 2148 HOH HOH . D 4 HOH A 149 2149 2149 HOH HOH . D 4 HOH A 150 2150 2150 HOH HOH . D 4 HOH A 151 2151 2151 HOH HOH . D 4 HOH A 152 2152 2152 HOH HOH . D 4 HOH A 153 2153 2153 HOH HOH . D 4 HOH A 154 2154 2154 HOH HOH . D 4 HOH A 155 2155 2155 HOH HOH . D 4 HOH A 156 2156 2156 HOH HOH . D 4 HOH A 157 2157 2157 HOH HOH . D 4 HOH A 158 2158 2158 HOH HOH . D 4 HOH A 159 2159 2159 HOH HOH . D 4 HOH A 160 2160 2160 HOH HOH . D 4 HOH A 161 2161 2161 HOH HOH . D 4 HOH A 162 2162 2162 HOH HOH . D 4 HOH A 163 2163 2163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OBB UPX . . . B 2 -49.568 -15.812 -11.411 1 52.66 ? OBB UPX 600 A 1 HETATM 2 N NAB UPX . . . B 2 -48.916 -16.967 -11.891 1 49.32 ? NAB UPX 600 A 1 HETATM 3 O OBC UPX . . . B 2 -49.238 -17.374 -13.18 1 55.96 ? OBC UPX 600 A 1 HETATM 4 C CAJ UPX . . . B 2 -47.994 -17.606 -11.175 1 47.6 ? CAJ UPX 600 A 1 HETATM 5 C CAI UPX . . . B 2 -47.338 -18.739 -11.661 1 46.48 ? CAI UPX 600 A 1 HETATM 6 C CAH UPX . . . B 2 -46.375 -19.37 -10.865 1 45.4 ? CAH UPX 600 A 1 HETATM 7 C CAM UPX . . . B 2 -46.067 -18.878 -9.599 1 45.11 ? CAM UPX 600 A 1 HETATM 8 C CAL UPX . . . B 2 -46.715 -17.739 -9.117 1 46.01 ? CAL UPX 600 A 1 HETATM 9 C CAO UPX . . . B 2 -46.633 -17.035 -7.976 1 45.23 ? CAO UPX 600 A 1 HETATM 10 C CAK UPX . . . B 2 -47.671 -17.118 -9.916 1 45.53 ? CAK UPX 600 A 1 HETATM 11 N NAA UPX . . . B 2 -48.133 -16.076 -9.254 1 43.6 ? NAA UPX 600 A 1 HETATM 12 C CAN UPX . . . B 2 -47.51 -16.024 -8.087 1 43.53 ? CAN UPX 600 A 1 HETATM 13 C CAP UPX . . . B 2 -47.848 -14.914 -7.076 1 41.45 ? CAP UPX 600 A 1 HETATM 14 O OBD UPX . . . B 2 -48.742 -14.115 -7.376 1 39.34 ? OBD UPX 600 A 1 HETATM 15 N NAC UPX . . . B 2 -47.127 -14.91 -5.937 1 41.18 ? NAC UPX 600 A 1 HETATM 16 C CAQ UPX . . . B 2 -47.287 -14.087 -4.875 1 39.1 ? CAQ UPX 600 A 1 HETATM 17 C CAV UPX . . . B 2 -46.498 -14.309 -3.742 1 38.69 ? CAV UPX 600 A 1 HETATM 18 C CAU UPX . . . B 2 -46.617 -13.538 -2.587 1 38.96 ? CAU UPX 600 A 1 HETATM 19 C CAR UPX . . . B 2 -48.217 -13.067 -4.826 1 38.46 ? CAR UPX 600 A 1 HETATM 20 C CAS UPX . . . B 2 -48.344 -12.281 -3.671 1 38.79 ? CAS UPX 600 A 1 HETATM 21 C CAT UPX . . . B 2 -47.548 -12.493 -2.542 1 39.02 ? CAT UPX 600 A 1 HETATM 22 C CAW UPX . . . B 2 -47.683 -11.699 -1.392 1 36.62 ? CAW UPX 600 A 1 HETATM 23 C CAX UPX . . . B 2 -48.294 -10.288 -1.451 1 36.3 ? CAX UPX 600 A 1 HETATM 24 N NAD UPX . . . B 2 -47.31 -12.204 -0.211 1 38.9 ? NAD UPX 600 A 1 HETATM 25 N NAE UPX . . . B 2 -47.357 -11.586 0.869 1 39.28 ? NAE UPX 600 A 1 HETATM 26 C CAY UPX . . . B 2 -46.974 -12.205 2.003 1 39.9 ? CAY UPX 600 A 1 HETATM 27 N NAF UPX . . . B 2 -47.018 -11.676 3.228 1 39.07 ? NAF UPX 600 A 1 HETATM 28 C CAZ UPX . . . B 2 -46.501 -12.608 4.219 1 39.08 ? CAZ UPX 600 A 1 HETATM 29 C CBA UPX . . . B 2 -46.155 -13.831 3.402 1 40.06 ? CBA UPX 600 A 1 HETATM 30 N NAG UPX . . . B 2 -46.534 -13.456 2.04 1 41.13 ? NAG UPX 600 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #