data_2YCW # _model_server_result.job_id aMMq0CWdUmjq10R2yy7A4A _model_server_result.datetime_utc '2024-11-26 16:04:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ycw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1360}' # _entry.id 2YCW # _exptl.entry_id 2YCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEGA-10 _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.52 _cell.angle_gamma 90 _cell.entry_id 2YCW _cell.length_a 89.398 _cell.length_b 57.056 _cell.length_c 109.542 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A O ASP 165 A ASP 195 1_555 F NA NA . A NA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc2 A O CYS 168 A CYS 198 1_555 F NA NA . A NA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc3 B O ASP 165 B ASP 195 1_555 K NA NA . B NA 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc4 B O CYS 168 B CYS 198 1_555 K NA NA . B NA 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? # _chem_comp.formula 'C18 H37 N O7' _chem_comp.formula_weight 379.489 _chem_comp.id 2CV _chem_comp.mon_nstd_flag . _chem_comp.name HEGA-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C12 2CV sing 1 n n C9 C1 2CV sing 2 n n C12 C15 2CV sing 3 n n C15 C18 2CV sing 4 n n C18 C21 2CV sing 5 n n C21 C24 2CV sing 6 n n C24 C27 2CV sing 7 n n C27 C30 2CV sing 8 n n C30 N33 2CV sing 9 n n C30 O34 2CV doub 10 n n N33 C35 2CV sing 11 n n N33 C36 2CV sing 12 n n C35 C60 2CV sing 13 n n C36 C37 2CV sing 14 n n C37 C40 2CV sing 15 n n C37 O47 2CV sing 16 n n C40 C41 2CV sing 17 n n C40 O49 2CV sing 18 n n C41 C42 2CV sing 19 n n C41 O51 2CV sing 20 n n C42 C43 2CV sing 21 n n C42 O53 2CV sing 22 n n C43 O44 2CV sing 23 n n C60 O63 2CV sing 24 n n C1 C0 2CV sing 25 n n C9 H91C 2CV sing 26 n n C9 H92C 2CV sing 27 n n C12 H121 2CV sing 28 n n C12 H122 2CV sing 29 n n C1 H11C 2CV sing 30 n n C1 H12C 2CV sing 31 n n C15 H151 2CV sing 32 n n C15 H152 2CV sing 33 n n C18 H181 2CV sing 34 n n C18 H182 2CV sing 35 n n C21 H211 2CV sing 36 n n C21 H212 2CV sing 37 n n C24 H241 2CV sing 38 n n C24 H242 2CV sing 39 n n C27 H271 2CV sing 40 n n C27 H272 2CV sing 41 n n C35 H351 2CV sing 42 n n C35 H352 2CV sing 43 n n C36 H361 2CV sing 44 n n C36 H362 2CV sing 45 n n C60 H601 2CV sing 46 n n C60 H602 2CV sing 47 n n C37 H37 2CV sing 48 n n C40 H40 2CV sing 49 n n O47 H47 2CV sing 50 n n C41 H41 2CV sing 51 n n O49 H49 2CV sing 52 n n C42 H42 2CV sing 53 n n O51 H51 2CV sing 54 n n C43 H431 2CV sing 55 n n C43 H432 2CV sing 56 n n O53 H53 2CV sing 57 n n O44 H44 2CV sing 58 n n O63 H63 2CV sing 59 n n C0 H01C 2CV sing 60 n n C0 H02C 2CV sing 61 n n C0 H03C 2CV sing 62 n n # _atom_sites.entry_id 2YCW _atom_sites.fract_transf_matrix[1][1] 0.011186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004868 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CAU A 1 400 400 CAU CAU . D 3 2CV A 1 1360 1360 2CV 2CV . E 3 2CV A 1 1361 1361 2CV 2CV . F 4 NA A 1 1362 1362 NA NA . G 2 CAU B 1 400 400 CAU CAU . H 3 2CV B 1 1360 1360 2CV 2CV . I 3 2CV B 1 1361 1361 2CV 2CV . J 3 2CV B 1 1362 1362 2CV 2CV . K 4 NA B 1 1363 1363 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 2CV . . . D 3 46.701 12.196 40.569 1 92.72 ? C9 2CV 1360 A 1 HETATM 2 C C12 2CV . . . D 3 46.79 12.692 42.01 1 94.11 ? C12 2CV 1360 A 1 HETATM 3 C C15 2CV . . . D 3 47.709 13.909 42.129 1 95.86 ? C15 2CV 1360 A 1 HETATM 4 C C18 2CV . . . D 3 48.03 14.205 43.596 1 98.08 ? C18 2CV 1360 A 1 HETATM 5 C C21 2CV . . . D 3 48.413 15.677 43.804 1 100.61 ? C21 2CV 1360 A 1 HETATM 6 C C24 2CV . . . D 3 48.013 16.192 45.2 1 103.07 ? C24 2CV 1360 A 1 HETATM 7 C C27 2CV . . . D 3 48.905 17.354 45.661 1 105.21 ? C27 2CV 1360 A 1 HETATM 8 C C30 2CV . . . D 3 50.277 16.855 46.148 1 107.73 ? C30 2CV 1360 A 1 HETATM 9 N N33 2CV . . . D 3 50.993 17.732 46.862 1 109.67 ? N33 2CV 1360 A 1 HETATM 10 O O34 2CV . . . D 3 50.663 15.713 45.888 1 107.56 ? O34 2CV 1360 A 1 HETATM 11 C C35 2CV . . . D 3 50.479 19.087 47.154 1 110.14 ? C35 2CV 1360 A 1 HETATM 12 C C36 2CV . . . D 3 52.328 17.364 47.391 1 110.63 ? C36 2CV 1360 A 1 HETATM 13 C C37 2CV . . . D 3 52.221 16.534 48.691 1 111.81 ? C37 2CV 1360 A 1 HETATM 14 C C40 2CV . . . D 3 52.829 15.124 48.529 1 112.51 ? C40 2CV 1360 A 1 HETATM 15 C C41 2CV . . . D 3 52.497 14.157 49.697 1 112.98 ? C41 2CV 1360 A 1 HETATM 16 C C42 2CV . . . D 3 51.084 13.504 49.609 1 112.92 ? C42 2CV 1360 A 1 HETATM 17 C C43 2CV . . . D 3 50.55 13.438 48.165 1 112.44 ? C43 2CV 1360 A 1 HETATM 18 O O44 2CV . . . D 3 49.334 14.186 48.028 1 111.48 ? O44 2CV 1360 A 1 HETATM 19 O O47 2CV . . . D 3 50.854 16.448 49.124 1 112.31 ? O47 2CV 1360 A 1 HETATM 20 O O49 2CV . . . D 3 54.256 15.227 48.404 1 112.58 ? O49 2CV 1360 A 1 HETATM 21 O O51 2CV . . . D 3 52.688 14.807 50.968 1 113.1 ? O51 2CV 1360 A 1 HETATM 22 O O53 2CV . . . D 3 50.136 14.176 50.461 1 113.09 ? O53 2CV 1360 A 1 HETATM 23 C C60 2CV . . . D 3 51.232 20.13 46.323 1 110.39 ? C60 2CV 1360 A 1 HETATM 24 O O63 2CV . . . D 3 50.798 20.05 44.959 1 110.9 ? O63 2CV 1360 A 1 HETATM 25 C C1 2CV . . . D 3 45.687 11.057 40.42 1 91.76 ? C1 2CV 1360 A 1 HETATM 26 C C0 2CV . . . D 3 46.023 9.868 41.32 1 91.05 ? C0 2CV 1360 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #