data_2YCX # _model_server_result.job_id lhn69bj9mQdneBer3g-bZQ _model_server_result.datetime_utc '2024-11-26 10:57:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ycx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1355}' # _entry.id 2YCX # _exptl.entry_id 2YCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.357 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.33 _cell.angle_gamma 90 _cell.entry_id 2YCX _cell.length_a 150.029 _cell.length_b 56.434 _cell.length_c 111.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D,E,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C16 H21 N3 O2' _chem_comp.formula_weight 287.357 _chem_comp.id P32 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N3 P32 trip 235 n n C16 C1 P32 sing 236 n n N1 C1 P32 doub 237 n n N1 C8 P32 sing 238 n n C1 C2 P32 sing 239 n n C2 C3 P32 sing 240 n n C3 C4 P32 sing 241 n y C3 C8 P32 doub 242 n y C4 C5 P32 doub 243 n y C4 O1 P32 sing 244 n n C5 C6 P32 sing 245 n y C6 C7 P32 doub 246 n y C7 C8 P32 sing 247 n y O1 C9 P32 sing 248 n n C9 C10 P32 sing 249 n n C10 O2 P32 sing 250 n n C10 C11 P32 sing 251 n n C11 N2 P32 sing 252 n n N2 C12 P32 sing 253 n n C12 C13 P32 sing 254 n n C12 C14 P32 sing 255 n n C12 C15 P32 sing 256 n n C2 H2 P32 sing 257 n n C2 H1 P32 sing 258 n n C5 H5 P32 sing 259 n n C6 H6 P32 sing 260 n n C7 H7 P32 sing 261 n n C9 H9C1 P32 sing 262 n n C9 H9C2 P32 sing 263 n n C10 H10 P32 sing 264 n n O2 HA P32 sing 265 n n C11 H111 P32 sing 266 n n C11 H112 P32 sing 267 n n N2 HB P32 sing 268 n n C13 H131 P32 sing 269 n n C13 H132 P32 sing 270 n n C13 H133 P32 sing 271 n n C14 H141 P32 sing 272 n n C14 H142 P32 sing 273 n n C14 H143 P32 sing 274 n n C15 H151 P32 sing 275 n n C15 H152 P32 sing 276 n n C15 H153 P32 sing 277 n n # _atom_sites.entry_id 2YCX _atom_sites.fract_transf_matrix[1][1] 0.006665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P32 A 1 1355 1355 P32 P32 . D 2 P32 B 1 1359 1359 P32 P32 . E 3 SOG B 1 1360 1360 SOG SOG . F 3 SOG B 1 1361 1361 SOG SOG . G 3 SOG B 1 1362 1362 SOG SOG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 P32 . . . C 2 54.433 -19.466 -26.915 1 54.17 ? O2 P32 1355 A 1 HETATM 2 C C10 P32 . . . C 2 53.507 -20.164 -26.125 1 54.8 ? C10 P32 1355 A 1 HETATM 3 N N3 P32 . . . C 2 46.598 -24.349 -22.803 1 54.52 ? N3 P32 1355 A 1 HETATM 4 C C11 P32 . . . C 2 54.11 -20.477 -24.742 1 56.27 ? C11 P32 1355 A 1 HETATM 5 N N2 P32 . . . C 2 55.512 -20.939 -24.722 1 57.95 ? N2 P32 1355 A 1 HETATM 6 C C12 P32 . . . C 2 55.778 -22.1 -23.814 1 58.41 ? C12 P32 1355 A 1 HETATM 7 C C15 P32 . . . C 2 55.863 -21.635 -22.338 1 58.27 ? C15 P32 1355 A 1 HETATM 8 C C13 P32 . . . C 2 57.153 -22.723 -24.165 1 58.54 ? C13 P32 1355 A 1 HETATM 9 C C9 P32 . . . C 2 52.273 -19.281 -25.913 1 54.22 ? C9 P32 1355 A 1 HETATM 10 O O1 P32 . . . C 2 51.303 -20.003 -25.192 1 53.68 ? O1 P32 1355 A 1 HETATM 11 C C4 P32 . . . C 2 50.074 -19.414 -24.857 1 53.67 ? C4 P32 1355 A 1 HETATM 12 C C5 P32 . . . C 2 49.845 -17.91 -25.028 1 53.98 ? C5 P32 1355 A 1 HETATM 13 C C6 P32 . . . C 2 48.488 -17.286 -24.653 1 54.39 ? C6 P32 1355 A 1 HETATM 14 C C7 P32 . . . C 2 47.357 -18.155 -24.113 1 53.83 ? C7 P32 1355 A 1 HETATM 15 C C8 P32 . . . C 2 47.594 -19.662 -23.943 1 54.14 ? C8 P32 1355 A 1 HETATM 16 C C3 P32 . . . C 2 48.943 -20.285 -24.31 1 54.08 ? C3 P32 1355 A 1 HETATM 17 N N1 P32 . . . C 2 46.702 -20.739 -23.446 1 54.37 ? N1 P32 1355 A 1 HETATM 18 C C1 P32 . . . C 2 47.47 -22.032 -23.499 1 54.76 ? C1 P32 1355 A 1 HETATM 19 C C2 P32 . . . C 2 48.86 -21.741 -24.039 1 54.4 ? C2 P32 1355 A 1 HETATM 20 C C16 P32 . . . C 2 46.966 -23.315 -23.108 1 55.01 ? C16 P32 1355 A 1 HETATM 21 C C14 P32 . . . C 2 54.699 -23.214 -23.96 1 58.22 ? C14 P32 1355 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #