data_2YCX
#
_model_server_result.job_id            0xzoeVXpAgGbRZK7ef32MQ 
_model_server_result.datetime_utc      '2024-11-22 22:11:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ycx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1359}' 
#
_entry.id    2YCX 
#
_exptl.entry_id    2YCX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              287.357 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.33 
_cell.angle_gamma         90 
_cell.entry_id            2YCX 
_cell.length_a            150.029 
_cell.length_b            56.434 
_cell.length_c            111.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YCX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D,E,F,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C16 H21 N3 O2' 
_chem_comp.formula_weight    287.357 
_chem_comp.id                P32 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 N3 P32 trip 235 n n 
C16 C1 P32 sing 236 n n 
N1 C1 P32 doub 237 n n 
N1 C8 P32 sing 238 n n 
C1 C2 P32 sing 239 n n 
C2 C3 P32 sing 240 n n 
C3 C4 P32 sing 241 n y 
C3 C8 P32 doub 242 n y 
C4 C5 P32 doub 243 n y 
C4 O1 P32 sing 244 n n 
C5 C6 P32 sing 245 n y 
C6 C7 P32 doub 246 n y 
C7 C8 P32 sing 247 n y 
O1 C9 P32 sing 248 n n 
C9 C10 P32 sing 249 n n 
C10 O2 P32 sing 250 n n 
C10 C11 P32 sing 251 n n 
C11 N2 P32 sing 252 n n 
N2 C12 P32 sing 253 n n 
C12 C13 P32 sing 254 n n 
C12 C14 P32 sing 255 n n 
C12 C15 P32 sing 256 n n 
C2 H2 P32 sing 257 n n 
C2 H1 P32 sing 258 n n 
C5 H5 P32 sing 259 n n 
C6 H6 P32 sing 260 n n 
C7 H7 P32 sing 261 n n 
C9 H9C1 P32 sing 262 n n 
C9 H9C2 P32 sing 263 n n 
C10 H10 P32 sing 264 n n 
O2 HA P32 sing 265 n n 
C11 H111 P32 sing 266 n n 
C11 H112 P32 sing 267 n n 
N2 HB P32 sing 268 n n 
C13 H131 P32 sing 269 n n 
C13 H132 P32 sing 270 n n 
C13 H133 P32 sing 271 n n 
C14 H141 P32 sing 272 n n 
C14 H142 P32 sing 273 n n 
C14 H143 P32 sing 274 n n 
C15 H151 P32 sing 275 n n 
C15 H152 P32 sing 276 n n 
C15 H153 P32 sing 277 n n 
#
_atom_sites.entry_id                     2YCX 
_atom_sites.fract_transf_matrix[1][1]    0.006665 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003593 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 P32 A 1 1355 1355 P32 P32 . 
D 2 P32 B 1 1359 1359 P32 P32 . 
E 3 SOG B 1 1360 1360 SOG SOG . 
F 3 SOG B 1 1361 1361 SOG SOG . 
G 3 SOG B 1 1362 1362 SOG SOG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 P32 . . . D 2 24.239 -3.345 -11.903 1 33.85 ? O2 P32 1359 B 1 
HETATM 2 C C10 P32 . . . D 2 25.339 -2.536 -12.281 1 36.82 ? C10 P32 1359 B 1 
HETATM 3 N N3 P32 . . . D 2 32.745 1.693 -14.847 1 43.01 ? N3 P32 1359 B 1 
HETATM 4 C C11 P32 . . . D 2 26.145 -1.986 -11.078 1 37.78 ? C11 P32 1359 B 1 
HETATM 5 N N2 P32 . . . D 2 25.509 -0.793 -10.473 1 39.2 ? N2 P32 1359 B 1 
HETATM 6 C C12 P32 . . . D 2 26.082 -0.234 -9.215 1 37.54 ? C12 P32 1359 B 1 
HETATM 7 C C15 P32 . . . D 2 26.456 -1.282 -8.133 1 36.22 ? C15 P32 1359 B 1 
HETATM 8 C C13 P32 . . . D 2 25.004 0.683 -8.576 1 36.51 ? C13 P32 1359 B 1 
HETATM 9 C C9 P32 . . . D 2 26.297 -3.297 -13.21 1 37.62 ? C9 P32 1359 B 1 
HETATM 10 O O1 P32 . . . D 2 27.379 -2.475 -13.621 1 37.78 ? O1 P32 1359 B 1 
HETATM 11 C C4 P32 . . . D 2 28.506 -3.049 -14.245 1 36.93 ? C4 P32 1359 B 1 
HETATM 12 C C5 P32 . . . D 2 28.53 -4.529 -14.62 1 37.71 ? C5 P32 1359 B 1 
HETATM 13 C C6 P32 . . . D 2 29.765 -5.142 -15.296 1 38.39 ? C6 P32 1359 B 1 
HETATM 14 C C7 P32 . . . D 2 30.986 -4.293 -15.606 1 36.8 ? C7 P32 1359 B 1 
HETATM 15 C C8 P32 . . . D 2 30.941 -2.823 -15.223 1 36.81 ? C8 P32 1359 B 1 
HETATM 16 C C3 P32 . . . D 2 29.724 -2.2 -14.55 1 36.6 ? C3 P32 1359 B 1 
HETATM 17 N N1 P32 . . . D 2 31.96 -1.776 -15.393 1 38.71 ? N1 P32 1359 B 1 
HETATM 18 C C1 P32 . . . D 2 31.398 -0.496 -14.828 1 39.65 ? C1 P32 1359 B 1 
HETATM 19 C C2 P32 . . . D 2 29.999 -0.765 -14.307 1 37.72 ? C2 P32 1359 B 1 
HETATM 20 C C16 P32 . . . D 2 32.1 0.753 -14.815 1 41.39 ? C16 P32 1359 B 1 
HETATM 21 C C14 P32 . . . D 2 27.337 0.57 -9.635 1 37.05 ? C14 P32 1359 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#