data_2YCY # _model_server_result.job_id Z8q5FbEoHRq_ulmnSn61eA _model_server_result.datetime_utc '2024-11-01 11:34:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ycy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 2YCY # _exptl.entry_id 2YCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.357 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.27 _cell.angle_gamma 90 _cell.entry_id 2YCY _cell.length_a 184.76 _cell.length_b 56.161 _cell.length_c 89.778 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc1 B O CYS 162 B CYS 192 1_555 J NA NA . B NA 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc2 B O ASP 165 B ASP 195 1_555 J NA NA . B NA 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc3 B O CYS 168 B CYS 198 1_555 J NA NA . B NA 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'C16 H21 N3 O2' _chem_comp.formula_weight 287.357 _chem_comp.id P32 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N3 P32 trip 237 n n C16 C1 P32 sing 238 n n N1 C1 P32 doub 239 n n N1 C8 P32 sing 240 n n C1 C2 P32 sing 241 n n C2 C3 P32 sing 242 n n C3 C4 P32 sing 243 n y C3 C8 P32 doub 244 n y C4 C5 P32 doub 245 n y C4 O1 P32 sing 246 n n C5 C6 P32 sing 247 n y C6 C7 P32 doub 248 n y C7 C8 P32 sing 249 n y O1 C9 P32 sing 250 n n C9 C10 P32 sing 251 n n C10 O2 P32 sing 252 n n C10 C11 P32 sing 253 n n C11 N2 P32 sing 254 n n N2 C12 P32 sing 255 n n C12 C13 P32 sing 256 n n C12 C14 P32 sing 257 n n C12 C15 P32 sing 258 n n C2 H2 P32 sing 259 n n C2 H1 P32 sing 260 n n C5 H5 P32 sing 261 n n C6 H6 P32 sing 262 n n C7 H7 P32 sing 263 n n C9 H9C1 P32 sing 264 n n C9 H9C2 P32 sing 265 n n C10 H10 P32 sing 266 n n O2 HA P32 sing 267 n n C11 H111 P32 sing 268 n n C11 H112 P32 sing 269 n n N2 HB P32 sing 270 n n C13 H131 P32 sing 271 n n C13 H132 P32 sing 272 n n C13 H133 P32 sing 273 n n C14 H141 P32 sing 274 n n C14 H142 P32 sing 275 n n C14 H143 P32 sing 276 n n C15 H151 P32 sing 277 n n C15 H152 P32 sing 278 n n C15 H153 P32 sing 279 n n # _atom_sites.entry_id 2YCY _atom_sites.fract_transf_matrix[1][1] 0.005412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002107 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P32 A 1 400 400 P32 P32 . D 3 SOG A 1 1360 1360 SOG SOG . E 3 SOG A 1 1361 1361 SOG SOG . F 2 P32 B 1 400 400 P32 P32 . G 3 SOG B 1 1360 1360 SOG SOG . H 3 SOG B 1 1361 1361 SOG SOG . I 3 SOG B 1 1362 1362 SOG SOG . J 4 NA B 1 1363 1363 NA NA . K 5 HOH A 1 2001 2001 HOH HOH . L 5 HOH B 1 2001 2001 HOH HOH . L 5 HOH B 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 P32 . . . C 2 15.721 18.164 -8.348 1 36.92 ? O2 P32 400 A 1 HETATM 2 C C10 P32 . . . C 2 16.736 19.134 -8.683 1 43.03 ? C10 P32 400 A 1 HETATM 3 N N3 P32 . . . C 2 24.014 22.744 -10.983 1 54.38 ? N3 P32 400 A 1 HETATM 4 C C11 P32 . . . C 2 17.255 19.863 -7.462 1 40.87 ? C11 P32 400 A 1 HETATM 5 N N2 P32 . . . C 2 16.132 20.549 -6.788 1 39.12 ? N2 P32 400 A 1 HETATM 6 C C12 P32 . . . C 2 16.614 21.293 -5.579 1 35.77 ? C12 P32 400 A 1 HETATM 7 C C15 P32 . . . C 2 17.175 20.363 -4.49 1 32.91 ? C15 P32 400 A 1 HETATM 8 C C13 P32 . . . C 2 15.527 22.079 -4.9 1 34.94 ? C13 P32 400 A 1 HETATM 9 C C9 P32 . . . C 2 17.879 18.346 -9.36 1 47.78 ? C9 P32 400 A 1 HETATM 10 O O1 P32 . . . C 2 18.954 19.198 -9.729 1 53.81 ? O1 P32 400 A 1 HETATM 11 C C4 P32 . . . C 2 19.959 18.49 -10.337 1 56.98 ? C4 P32 400 A 1 HETATM 12 C C5 P32 . . . C 2 19.854 17.135 -10.638 1 57.1 ? C5 P32 400 A 1 HETATM 13 C C6 P32 . . . C 2 20.921 16.507 -11.253 1 57.82 ? C6 P32 400 A 1 HETATM 14 C C7 P32 . . . C 2 22.048 17.245 -11.561 1 57.59 ? C7 P32 400 A 1 HETATM 15 C C8 P32 . . . C 2 22.101 18.54 -11.25 1 57.84 ? C8 P32 400 A 1 HETATM 16 C C3 P32 . . . C 2 21.074 19.16 -10.643 1 59.58 ? C3 P32 400 A 1 HETATM 17 N N1 P32 . . . C 2 23.071 19.429 -11.448 1 57.4 ? N1 P32 400 A 1 HETATM 18 C C1 P32 . . . C 2 22.644 20.585 -10.965 1 56.49 ? C1 P32 400 A 1 HETATM 19 C C2 P32 . . . C 2 21.422 20.437 -10.463 1 57.38 ? C2 P32 400 A 1 HETATM 20 C C16 P32 . . . C 2 23.409 21.8 -10.979 1 55.13 ? C16 P32 400 A 1 HETATM 21 C C14 P32 . . . C 2 17.628 22.343 -5.993 1 35.72 ? C14 P32 400 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #