data_2YCZ # _model_server_result.job_id W-A2IHoO9ARcoJhjRl0dpA _model_server_result.datetime_utc '2024-11-23 02:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ycz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 2YCZ # _exptl.entry_id 2YCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3-iodo-1H-indole-2-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.39 _cell.angle_gamma 90 _cell.entry_id 2YCZ _cell.length_a 177.855 _cell.length_b 56.298 _cell.length_c 110.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C16 H20 I N3 O2' _chem_comp.formula_weight 413.253 _chem_comp.id I32 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3-iodo-1H-indole-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms IODOCYANOPINDOLOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C10 I32 sing 150 n n C10 C11 I32 sing 151 n n C10 C9 I32 sing 152 n n C11 N2 I32 sing 153 n n N2 C12 I32 sing 154 n n C12 C15 I32 sing 155 n n C12 C13 I32 sing 156 n n C12 C14 I32 sing 157 n n C9 O1 I32 sing 158 n n O1 C4 I32 sing 159 n n C4 C5 I32 sing 160 n y C4 C3 I32 doub 161 n y C5 C6 I32 doub 162 n y C6 C7 I32 sing 163 n y C7 C8 I32 doub 164 n y C8 C3 I32 sing 165 n y C8 N1 I32 sing 166 n y C3 C2 I32 sing 167 n y N1 C1 I32 sing 168 n y C1 C2 I32 doub 169 n y C1 C16 I32 sing 170 n n C2 IAA I32 sing 171 n n C16 NAF I32 trip 172 n n O2 H2 I32 sing 173 n n C10 H10 I32 sing 174 n n C11 H111 I32 sing 175 n n C11 H112 I32 sing 176 n n C9 H91C I32 sing 177 n n C9 H92C I32 sing 178 n n N2 HA I32 sing 179 n n C15 H151 I32 sing 180 n n C15 H152 I32 sing 181 n n C15 H153 I32 sing 182 n n C13 H131 I32 sing 183 n n C13 H132 I32 sing 184 n n C13 H133 I32 sing 185 n n C14 H141 I32 sing 186 n n C14 H142 I32 sing 187 n n C14 H143 I32 sing 188 n n C5 H5 I32 sing 189 n n C6 H6 I32 sing 190 n n C7 H7 I32 sing 191 n n N1 H1 I32 sing 192 n n # _atom_sites.entry_id 2YCZ _atom_sites.fract_transf_matrix[1][1] 0.005623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00279 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I32 A 1 400 400 I32 I32 . D 2 I32 B 1 400 400 I32 I32 . E 3 SOG B 1 1360 1360 SOG SOG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 I32 . . . C 2 64.42 -9.843 14.497 0.8 70.24 ? O2 I32 400 A 1 HETATM 2 C C10 I32 . . . C 2 63.521 -8.9 15.137 0.8 70.33 ? C10 I32 400 A 1 HETATM 3 C C11 I32 . . . C 2 62.882 -7.988 14.082 0.8 72.48 ? C11 I32 400 A 1 HETATM 4 N N2 I32 . . . C 2 63.908 -7.357 13.227 0.8 67.36 ? N2 I32 400 A 1 HETATM 5 C C12 I32 . . . C 2 63.281 -6.488 12.206 0.8 63.39 ? C12 I32 400 A 1 HETATM 6 C C15 I32 . . . C 2 64.376 -5.861 11.356 0.8 63.04 ? C15 I32 400 A 1 HETATM 7 C C13 I32 . . . C 2 62.478 -5.416 12.948 0.8 61.61 ? C13 I32 400 A 1 HETATM 8 C C9 I32 . . . C 2 62.383 -9.664 15.867 0.8 70.11 ? C9 I32 400 A 1 HETATM 9 O O1 I32 . . . C 2 61.493 -8.764 16.589 0.8 72.08 ? O1 I32 400 A 1 HETATM 10 C C4 I32 . . . C 2 60.42 -9.434 17.061 0.8 74.39 ? C4 I32 400 A 1 HETATM 11 C C5 I32 . . . C 2 60.484 -10.803 17.252 0.8 73.93 ? C5 I32 400 A 1 HETATM 12 C C6 I32 . . . C 2 59.411 -11.51 17.73 0.8 74.19 ? C6 I32 400 A 1 HETATM 13 C C7 I32 . . . C 2 58.244 -10.846 18.029 0.8 75.2 ? C7 I32 400 A 1 HETATM 14 C C8 I32 . . . C 2 58.161 -9.48 17.849 0.8 77.92 ? C8 I32 400 A 1 HETATM 15 C C3 I32 . . . C 2 59.247 -8.772 17.363 0.8 78.2 ? C3 I32 400 A 1 HETATM 16 N N1 I32 . . . C 2 57.158 -8.642 18.069 0.8 80.84 ? N1 I32 400 A 1 HETATM 17 C C1 I32 . . . C 2 57.547 -7.413 17.747 0.8 83.3 ? C1 I32 400 A 1 HETATM 18 C C2 I32 . . . C 2 58.837 -7.459 17.308 0.8 82.33 ? C2 I32 400 A 1 HETATM 19 C C16 I32 . . . C 2 56.847 -6.171 17.797 0.8 85.75 ? C16 I32 400 A 1 HETATM 20 C C14 I32 . . . C 2 62.4 -7.305 11.277 0.8 61 ? C14 I32 400 A 1 HETATM 21 I IAA I32 . . . C 2 59.885 -5.747 16.689 0.3 101.27 ? IAA I32 400 A 1 HETATM 22 N NAF I32 . . . C 2 56.298 -5.172 17.822 0.8 88.38 ? NAF I32 400 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #