data_2YCZ # _model_server_result.job_id nBPTFN_3JlBZdjs-jtE82g _model_server_result.datetime_utc '2024-11-26 17:07:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ycz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 2YCZ # _exptl.entry_id 2YCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3-iodo-1H-indole-2-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.39 _cell.angle_gamma 90 _cell.entry_id 2YCZ _cell.length_a 177.855 _cell.length_b 56.298 _cell.length_c 110.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C16 H20 I N3 O2' _chem_comp.formula_weight 413.253 _chem_comp.id I32 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3-iodo-1H-indole-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms IODOCYANOPINDOLOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C10 I32 sing 150 n n C10 C11 I32 sing 151 n n C10 C9 I32 sing 152 n n C11 N2 I32 sing 153 n n N2 C12 I32 sing 154 n n C12 C15 I32 sing 155 n n C12 C13 I32 sing 156 n n C12 C14 I32 sing 157 n n C9 O1 I32 sing 158 n n O1 C4 I32 sing 159 n n C4 C5 I32 sing 160 n y C4 C3 I32 doub 161 n y C5 C6 I32 doub 162 n y C6 C7 I32 sing 163 n y C7 C8 I32 doub 164 n y C8 C3 I32 sing 165 n y C8 N1 I32 sing 166 n y C3 C2 I32 sing 167 n y N1 C1 I32 sing 168 n y C1 C2 I32 doub 169 n y C1 C16 I32 sing 170 n n C2 IAA I32 sing 171 n n C16 NAF I32 trip 172 n n O2 H2 I32 sing 173 n n C10 H10 I32 sing 174 n n C11 H111 I32 sing 175 n n C11 H112 I32 sing 176 n n C9 H91C I32 sing 177 n n C9 H92C I32 sing 178 n n N2 HA I32 sing 179 n n C15 H151 I32 sing 180 n n C15 H152 I32 sing 181 n n C15 H153 I32 sing 182 n n C13 H131 I32 sing 183 n n C13 H132 I32 sing 184 n n C13 H133 I32 sing 185 n n C14 H141 I32 sing 186 n n C14 H142 I32 sing 187 n n C14 H143 I32 sing 188 n n C5 H5 I32 sing 189 n n C6 H6 I32 sing 190 n n C7 H7 I32 sing 191 n n N1 H1 I32 sing 192 n n # _atom_sites.entry_id 2YCZ _atom_sites.fract_transf_matrix[1][1] 0.005623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00279 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I32 A 1 400 400 I32 I32 . D 2 I32 B 1 400 400 I32 I32 . E 3 SOG B 1 1360 1360 SOG SOG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 I32 . . . D 2 32.502 -24.683 25.285 0.8 48.19 ? O2 I32 400 B 1 HETATM 2 C C10 I32 . . . D 2 33.526 -25.656 25.171 0.8 49.89 ? C10 I32 400 B 1 HETATM 3 C C11 I32 . . . D 2 33.293 -26.485 23.904 0.8 60.84 ? C11 I32 400 B 1 HETATM 4 N N2 I32 . . . D 2 31.944 -27.087 23.88 0.8 56.66 ? N2 I32 400 B 1 HETATM 5 C C12 I32 . . . D 2 31.789 -27.999 22.716 0.8 55.51 ? C12 I32 400 B 1 HETATM 6 C C15 I32 . . . D 2 30.38 -28.582 22.735 0.8 60.88 ? C15 I32 400 B 1 HETATM 7 C C13 I32 . . . D 2 32.833 -29.108 22.8 0.8 69.89 ? C13 I32 400 B 1 HETATM 8 C C9 I32 . . . D 2 34.884 -24.953 25.012 0.8 49.15 ? C9 I32 400 B 1 HETATM 9 O O1 I32 . . . D 2 36.043 -25.868 25.074 0.8 50.75 ? O1 I32 400 B 1 HETATM 10 C C4 I32 . . . D 2 37.217 -25.237 24.898 0.8 53.79 ? C4 I32 400 B 1 HETATM 11 C C5 I32 . . . D 2 37.357 -23.91 25.219 0.8 53.45 ? C5 I32 400 B 1 HETATM 12 C C6 I32 . . . D 2 38.532 -23.25 25.054 0.8 53.55 ? C6 I32 400 B 1 HETATM 13 C C7 I32 . . . D 2 39.611 -23.932 24.545 0.8 55.91 ? C7 I32 400 B 1 HETATM 14 C C8 I32 . . . D 2 39.49 -25.252 24.216 0.8 59.99 ? C8 I32 400 B 1 HETATM 15 C C3 I32 . . . D 2 38.29 -25.901 24.393 0.8 59.84 ? C3 I32 400 B 1 HETATM 16 N N1 I32 . . . D 2 40.384 -26.088 23.705 0.8 64.61 ? N1 I32 400 B 1 HETATM 17 C C1 I32 . . . D 2 39.802 -27.272 23.537 0.8 68.01 ? C1 I32 400 B 1 HETATM 18 C C2 I32 . . . D 2 38.507 -27.18 23.962 0.8 66.66 ? C2 I32 400 B 1 HETATM 19 C C16 I32 . . . D 2 40.32 -28.498 23.031 0.8 69.45 ? C16 I32 400 B 1 HETATM 20 C C14 I32 . . . D 2 31.975 -27.247 21.423 0.8 53.97 ? C14 I32 400 B 1 HETATM 21 I IAA I32 . . . D 2 37.183 -28.787 23.922 0.3 92.56 ? IAA I32 400 B 1 HETATM 22 N NAF I32 . . . D 2 40.719 -29.485 22.636 0.8 72.22 ? NAF I32 400 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #