data_2YEM # _model_server_result.job_id ze4TBRh6rZKkQIfMEzaFsA _model_server_result.datetime_utc '2024-11-22 20:14:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1460}' # _entry.id 2YEM # _exptl.entry_id 2YEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZYL [(4R)-1-METHYL-6-PHENYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]CARBAMATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YEM _cell.length_a 59.674 _cell.length_b 73.492 _cell.length_c 74.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H21 N5 O2' _chem_comp.formula_weight 423.467 _chem_comp.id WSH _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZYL [(4R)-1-METHYL-6-PHENYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]CARBAMATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 WSH sing 376 n y C17 C16 WSH doub 377 n y C10 C11 WSH sing 378 n y C10 C9 WSH doub 379 n y C18 C19 WSH doub 380 n y C16 C15 WSH sing 381 n y C22 C23 WSH sing 382 n y C22 C21 WSH doub 383 n y C11 C12 WSH doub 384 n y C9 C8 WSH sing 385 n y C23 C24 WSH doub 386 n y C19 C14 WSH sing 387 n y C15 C14 WSH doub 388 n y C21 C20 WSH sing 389 n y C12 C7 WSH sing 390 n y C8 C7 WSH doub 391 n y C24 C25 WSH sing 392 n y C14 C13 WSH sing 393 n n C20 C25 WSH doub 394 n y C20 C13 WSH sing 395 n n C7 C6 WSH sing 396 n n C25 N5 WSH sing 397 n y C3 C4 WSH sing 398 n n C3 N2 WSH doub 399 n y C3 N5 WSH sing 400 n y C2 C1 WSH sing 401 n n C2 N1 WSH doub 402 n y C2 N5 WSH sing 403 n y C13 N4 WSH doub 404 n n C5 N3 WSH sing 405 n n C5 O1 WSH doub 406 n n C5 O2 WSH sing 407 n n C4 N4 WSH sing 408 n n C4 N3 WSH sing 409 n n C6 O2 WSH sing 410 n n N2 N1 WSH sing 411 n y C17 H17 WSH sing 412 n n C18 H18 WSH sing 413 n n C16 H16 WSH sing 414 n n C10 H10 WSH sing 415 n n C11 H11 WSH sing 416 n n C9 H9 WSH sing 417 n n C19 H19 WSH sing 418 n n C15 H15 WSH sing 419 n n C22 H22 WSH sing 420 n n C23 H23 WSH sing 421 n n C21 H21 WSH sing 422 n n C12 H12 WSH sing 423 n n C8 H8 WSH sing 424 n n C24 H24 WSH sing 425 n n C6 H61C WSH sing 426 n n C6 H62C WSH sing 427 n n C4 H4 WSH sing 428 n n C1 H11C WSH sing 429 n n C1 H12C WSH sing 430 n n C1 H13C WSH sing 431 n n N3 H3 WSH sing 432 n n # _atom_sites.entry_id 2YEM _atom_sites.fract_transf_matrix[1][1] 0.016758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WSH A 1 1459 1459 WSH WSH . D 2 WSH B 1 1460 1460 WSH WSH . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . E 3 HOH A 52 2052 2052 HOH HOH . E 3 HOH A 53 2053 2053 HOH HOH . E 3 HOH A 54 2054 2054 HOH HOH . E 3 HOH A 55 2055 2055 HOH HOH . E 3 HOH A 56 2056 2056 HOH HOH . E 3 HOH A 57 2057 2057 HOH HOH . E 3 HOH A 58 2058 2058 HOH HOH . E 3 HOH A 59 2059 2059 HOH HOH . E 3 HOH A 60 2060 2060 HOH HOH . E 3 HOH A 61 2061 2061 HOH HOH . E 3 HOH A 62 2062 2062 HOH HOH . E 3 HOH A 63 2063 2063 HOH HOH . E 3 HOH A 64 2064 2064 HOH HOH . E 3 HOH A 65 2065 2065 HOH HOH . E 3 HOH A 66 2066 2066 HOH HOH . E 3 HOH A 67 2067 2067 HOH HOH . E 3 HOH A 68 2068 2068 HOH HOH . E 3 HOH A 69 2069 2069 HOH HOH . E 3 HOH A 70 2070 2070 HOH HOH . E 3 HOH A 71 2071 2071 HOH HOH . E 3 HOH A 72 2072 2072 HOH HOH . E 3 HOH A 73 2073 2073 HOH HOH . E 3 HOH A 74 2074 2074 HOH HOH . E 3 HOH A 75 2075 2075 HOH HOH . E 3 HOH A 76 2076 2076 HOH HOH . E 3 HOH A 77 2077 2077 HOH HOH . E 3 HOH A 78 2078 2078 HOH HOH . E 3 HOH A 79 2079 2079 HOH HOH . E 3 HOH A 80 2080 2080 HOH HOH . E 3 HOH A 81 2081 2081 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . F 3 HOH B 47 2047 2047 HOH HOH . F 3 HOH B 48 2048 2048 HOH HOH . F 3 HOH B 49 2049 2049 HOH HOH . F 3 HOH B 50 2050 2050 HOH HOH . F 3 HOH B 51 2051 2051 HOH HOH . F 3 HOH B 52 2052 2052 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 WSH . . . D 2 -17.371 1.801 -49.571 1 28.06 ? C17 WSH 1460 B 1 HETATM 2 C C10 WSH . . . D 2 -21.415 6.849 -51.262 1 30.84 ? C10 WSH 1460 B 1 HETATM 3 C C18 WSH . . . D 2 -17.987 3.016 -49.761 1 28.28 ? C18 WSH 1460 B 1 HETATM 4 C C16 WSH . . . D 2 -16.005 1.703 -49.687 1 27.87 ? C16 WSH 1460 B 1 HETATM 5 C C22 WSH . . . D 2 -12.848 4.041 -53.266 1 23.72 ? C22 WSH 1460 B 1 HETATM 6 C C11 WSH . . . D 2 -21.467 7.8 -52.253 1 31.15 ? C11 WSH 1460 B 1 HETATM 7 C C9 WSH . . . D 2 -20.226 6.588 -50.629 1 31.35 ? C9 WSH 1460 B 1 HETATM 8 C C23 WSH . . . D 2 -11.67 4.712 -53.017 1 23.32 ? C23 WSH 1460 B 1 HETATM 9 C C19 WSH . . . D 2 -17.227 4.124 -50.063 1 27.71 ? C19 WSH 1460 B 1 HETATM 10 C C15 WSH . . . D 2 -15.245 2.814 -49.984 1 27.74 ? C15 WSH 1460 B 1 HETATM 11 C C21 WSH . . . D 2 -13.944 4.226 -52.448 1 23.75 ? C21 WSH 1460 B 1 HETATM 12 C C12 WSH . . . D 2 -20.326 8.483 -52.607 1 31.81 ? C12 WSH 1460 B 1 HETATM 13 C C8 WSH . . . D 2 -19.089 7.273 -50.991 1 31.8 ? C8 WSH 1460 B 1 HETATM 14 C C24 WSH . . . D 2 -11.567 5.567 -51.941 1 22.63 ? C24 WSH 1460 B 1 HETATM 15 C C14 WSH . . . D 2 -15.856 4.034 -50.176 1 26.55 ? C14 WSH 1460 B 1 HETATM 16 C C20 WSH . . . D 2 -13.861 5.094 -51.356 1 24 ? C20 WSH 1460 B 1 HETATM 17 C C7 WSH . . . D 2 -19.125 8.229 -51.984 1 31.32 ? C7 WSH 1460 B 1 HETATM 18 C C25 WSH . . . D 2 -12.658 5.769 -51.099 1 23.57 ? C25 WSH 1460 B 1 HETATM 19 C C3 WSH . . . D 2 -13.419 7.595 -49.572 1 23.65 ? C3 WSH 1460 B 1 HETATM 20 C C2 WSH . . . D 2 -11.398 6.854 -49.159 1 25.44 ? C2 WSH 1460 B 1 HETATM 21 C C13 WSH . . . D 2 -15.067 5.261 -50.494 1 24.78 ? C13 WSH 1460 B 1 HETATM 22 C C5 WSH . . . D 2 -16.581 9.222 -50.418 1 25.65 ? C5 WSH 1460 B 1 HETATM 23 C C4 WSH . . . D 2 -14.76 7.605 -50.279 1 24.8 ? C4 WSH 1460 B 1 HETATM 24 C C1 WSH . . . D 2 -10.152 6.061 -49.219 1 26.75 ? C1 WSH 1460 B 1 HETATM 25 C C6 WSH . . . D 2 -17.902 8.993 -52.403 1 30.43 ? C6 WSH 1460 B 1 HETATM 26 N N2 WSH . . . D 2 -12.911 8.316 -48.607 1 23.79 ? N2 WSH 1460 B 1 HETATM 27 N N1 WSH . . . D 2 -11.632 7.85 -48.349 1 24.19 ? N1 WSH 1460 B 1 HETATM 28 N N4 WSH . . . D 2 -15.491 6.364 -49.997 1 22.87 ? N4 WSH 1460 B 1 HETATM 29 N N5 WSH . . . D 2 -12.488 6.644 -49.972 1 24.48 ? N5 WSH 1460 B 1 HETATM 30 N N3 WSH . . . D 2 -15.537 8.705 -49.743 1 23.72 ? N3 WSH 1460 B 1 HETATM 31 O O1 WSH . . . D 2 -17.281 10.136 -50.022 1 23.64 ? O1 WSH 1460 B 1 HETATM 32 O O2 WSH . . . D 2 -16.757 8.588 -51.608 1 28.89 ? O2 WSH 1460 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #