data_2YF2
#
_model_server_result.job_id            fvcZllVpm01QjJq9sRZ7Yg 
_model_server_result.datetime_utc      '2024-10-10 16:24:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":1450}' 
#
_entry.id    2YF2 
#
_exptl.entry_id    2YF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YF2 
_cell.length_a            83.888 
_cell.length_b            140.238 
_cell.length_c            85.465 
_cell.Z_PDB               56 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 V N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 FA N N 
? 3 KA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 405 1_555 B SG CYS 23 B CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 23 A CYS 418 1_555 G SG CYS 10 G CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 10 B CYS 405 1_555 C SG CYS 23 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf4 C SG CYS 10 C CYS 405 1_555 D SG CYS 23 D CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 D SG CYS 10 D CYS 405 1_555 E SG CYS 23 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 E SG CYS 10 E CYS 405 1_555 F SG CYS 23 F CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 F SG CYS 10 F CYS 405 1_555 G SG CYS 23 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2YF2 
_atom_sites.fract_transf_matrix[1][1]    0.011921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007131 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 EDO A 1 1459 1459 EDO EDO . 
I 3 ACT A 1 1460 1460 ACT ACT . 
J 2 EDO B 1 1447 1447 EDO EDO . 
K 2 EDO B 1 1448 1448 EDO EDO . 
L 2 EDO B 1 1449 1449 EDO EDO . 
M 2 EDO B 1 1450 1450 EDO EDO . 
N 2 EDO B 1 1451 1451 EDO EDO . 
O 2 EDO B 1 1452 1452 EDO EDO . 
P 3 ACT B 1 1453 1453 ACT ACT . 
Q 3 ACT B 1 1454 1454 ACT ACT . 
R 3 ACT B 1 1455 1455 ACT ACT . 
S 2 EDO C 1 1460 1460 EDO EDO . 
T 2 EDO C 1 1461 1461 EDO EDO . 
U 2 EDO C 1 1462 1462 EDO EDO . 
V 3 ACT C 1 1463 1463 ACT ACT . 
W 2 EDO D 1 1448 1448 EDO EDO . 
X 2 EDO D 1 1449 1449 EDO EDO . 
Y 3 ACT D 1 1450 1450 ACT ACT . 
Z 3 ACT D 1 1451 1451 ACT ACT . 
AA 3 ACT E 1 1459 1459 ACT ACT . 
BA 3 ACT E 1 1460 1460 ACT ACT . 
CA 2 EDO F 1 1448 1448 EDO EDO . 
DA 2 EDO F 1 1449 1449 EDO EDO . 
EA 2 EDO F 1 1450 1450 EDO EDO . 
FA 3 ACT F 1 1451 1451 ACT ACT . 
GA 2 EDO G 1 1460 1460 EDO EDO . 
HA 2 EDO G 1 1461 1461 EDO EDO . 
IA 2 EDO G 1 1462 1462 EDO EDO . 
JA 2 EDO G 1 1463 1463 EDO EDO . 
KA 3 ACT G 1 1464 1464 ACT ACT . 
LA 4 HOH A 1 2001 2001 HOH HOH . 
LA 4 HOH A 2 2002 2002 HOH HOH . 
LA 4 HOH A 3 2003 2003 HOH HOH . 
LA 4 HOH A 4 2004 2004 HOH HOH . 
MA 4 HOH B 1 2001 2001 HOH HOH . 
MA 4 HOH B 2 2002 2002 HOH HOH . 
MA 4 HOH B 3 2003 2003 HOH HOH . 
MA 4 HOH B 4 2004 2004 HOH HOH . 
MA 4 HOH B 5 2005 2005 HOH HOH . 
MA 4 HOH B 6 2006 2006 HOH HOH . 
MA 4 HOH B 7 2007 2007 HOH HOH . 
MA 4 HOH B 8 2008 2008 HOH HOH . 
MA 4 HOH B 9 2009 2009 HOH HOH . 
MA 4 HOH B 10 2010 2010 HOH HOH . 
MA 4 HOH B 11 2011 2011 HOH HOH . 
MA 4 HOH B 12 2012 2012 HOH HOH . 
NA 4 HOH C 1 2001 2001 HOH HOH . 
NA 4 HOH C 2 2002 2002 HOH HOH . 
NA 4 HOH C 3 2003 2003 HOH HOH . 
NA 4 HOH C 4 2004 2004 HOH HOH . 
NA 4 HOH C 5 2005 2005 HOH HOH . 
NA 4 HOH C 6 2006 2006 HOH HOH . 
NA 4 HOH C 7 2007 2007 HOH HOH . 
NA 4 HOH C 8 2008 2008 HOH HOH . 
NA 4 HOH C 9 2009 2009 HOH HOH . 
NA 4 HOH C 10 2010 2010 HOH HOH . 
NA 4 HOH C 11 2011 2011 HOH HOH . 
NA 4 HOH C 12 2012 2012 HOH HOH . 
NA 4 HOH C 13 2013 2013 HOH HOH . 
OA 4 HOH D 1 2001 2001 HOH HOH . 
OA 4 HOH D 2 2002 2002 HOH HOH . 
OA 4 HOH D 3 2003 2003 HOH HOH . 
OA 4 HOH D 4 2004 2004 HOH HOH . 
OA 4 HOH D 5 2005 2005 HOH HOH . 
OA 4 HOH D 6 2006 2006 HOH HOH . 
OA 4 HOH D 7 2007 2007 HOH HOH . 
OA 4 HOH D 8 2008 2008 HOH HOH . 
OA 4 HOH D 9 2009 2009 HOH HOH . 
OA 4 HOH D 10 2010 2010 HOH HOH . 
OA 4 HOH D 11 2011 2011 HOH HOH . 
PA 4 HOH E 1 2001 2001 HOH HOH . 
PA 4 HOH E 2 2002 2002 HOH HOH . 
PA 4 HOH E 3 2003 2003 HOH HOH . 
PA 4 HOH E 4 2004 2004 HOH HOH . 
PA 4 HOH E 5 2005 2005 HOH HOH . 
PA 4 HOH E 6 2006 2006 HOH HOH . 
PA 4 HOH E 7 2007 2007 HOH HOH . 
PA 4 HOH E 8 2008 2008 HOH HOH . 
PA 4 HOH E 9 2009 2009 HOH HOH . 
PA 4 HOH E 10 2010 2010 HOH HOH . 
QA 4 HOH F 1 2001 2001 HOH HOH . 
QA 4 HOH F 2 2002 2002 HOH HOH . 
QA 4 HOH F 3 2003 2003 HOH HOH . 
QA 4 HOH F 4 2004 2004 HOH HOH . 
QA 4 HOH F 5 2005 2005 HOH HOH . 
QA 4 HOH F 6 2006 2006 HOH HOH . 
QA 4 HOH F 7 2007 2007 HOH HOH . 
QA 4 HOH F 8 2008 2008 HOH HOH . 
QA 4 HOH F 9 2009 2009 HOH HOH . 
QA 4 HOH F 10 2010 2010 HOH HOH . 
QA 4 HOH F 11 2011 2011 HOH HOH . 
QA 4 HOH F 12 2012 2012 HOH HOH . 
RA 4 HOH G 1 2001 2001 HOH HOH . 
RA 4 HOH G 2 2002 2002 HOH HOH . 
RA 4 HOH G 3 2003 2003 HOH HOH . 
RA 4 HOH G 4 2004 2004 HOH HOH . 
RA 4 HOH G 5 2005 2005 HOH HOH . 
RA 4 HOH G 6 2006 2006 HOH HOH . 
RA 4 HOH G 7 2007 2007 HOH HOH . 
RA 4 HOH G 8 2008 2008 HOH HOH . 
RA 4 HOH G 9 2009 2009 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . Y 3 0.303 15.805 50.268 1 84.1 ? C ACT 1450 D 1 
HETATM 2 O O ACT . . . Y 3 -0.836 16.006 50.494 1 83.61 ? O ACT 1450 D 1 
HETATM 3 O OXT ACT . . . Y 3 1.036 16.744 50.235 1 84.13 ? OXT ACT 1450 D 1 
HETATM 4 C CH3 ACT . . . Y 3 0.79 14.427 50.033 1 83.7 ? CH3 ACT 1450 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#