data_2YF2 # _model_server_result.job_id lhLu1CeFnuWLLErDWfAwIw _model_server_result.datetime_utc '2024-10-10 16:26:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1459}' # _entry.id 2YF2 # _exptl.entry_id 2YF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YF2 _cell.length_a 83.888 _cell.length_b 140.238 _cell.length_c 85.465 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 W N N ? 2 X N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 405 1_555 B SG CYS 23 B CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 23 A CYS 418 1_555 G SG CYS 10 G CYS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 10 B CYS 405 1_555 C SG CYS 23 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 C SG CYS 10 C CYS 405 1_555 D SG CYS 23 D CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 D SG CYS 10 D CYS 405 1_555 E SG CYS 23 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 E SG CYS 10 E CYS 405 1_555 F SG CYS 23 F CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 F SG CYS 10 F CYS 405 1_555 G SG CYS 23 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 2YF2 _atom_sites.fract_transf_matrix[1][1] 0.011921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 EDO A 1 1459 1459 EDO EDO . I 3 ACT A 1 1460 1460 ACT ACT . J 2 EDO B 1 1447 1447 EDO EDO . K 2 EDO B 1 1448 1448 EDO EDO . L 2 EDO B 1 1449 1449 EDO EDO . M 2 EDO B 1 1450 1450 EDO EDO . N 2 EDO B 1 1451 1451 EDO EDO . O 2 EDO B 1 1452 1452 EDO EDO . P 3 ACT B 1 1453 1453 ACT ACT . Q 3 ACT B 1 1454 1454 ACT ACT . R 3 ACT B 1 1455 1455 ACT ACT . S 2 EDO C 1 1460 1460 EDO EDO . T 2 EDO C 1 1461 1461 EDO EDO . U 2 EDO C 1 1462 1462 EDO EDO . V 3 ACT C 1 1463 1463 ACT ACT . W 2 EDO D 1 1448 1448 EDO EDO . X 2 EDO D 1 1449 1449 EDO EDO . Y 3 ACT D 1 1450 1450 ACT ACT . Z 3 ACT D 1 1451 1451 ACT ACT . AA 3 ACT E 1 1459 1459 ACT ACT . BA 3 ACT E 1 1460 1460 ACT ACT . CA 2 EDO F 1 1448 1448 EDO EDO . DA 2 EDO F 1 1449 1449 EDO EDO . EA 2 EDO F 1 1450 1450 EDO EDO . FA 3 ACT F 1 1451 1451 ACT ACT . GA 2 EDO G 1 1460 1460 EDO EDO . HA 2 EDO G 1 1461 1461 EDO EDO . IA 2 EDO G 1 1462 1462 EDO EDO . JA 2 EDO G 1 1463 1463 EDO EDO . KA 3 ACT G 1 1464 1464 ACT ACT . LA 4 HOH A 1 2001 2001 HOH HOH . LA 4 HOH A 2 2002 2002 HOH HOH . LA 4 HOH A 3 2003 2003 HOH HOH . LA 4 HOH A 4 2004 2004 HOH HOH . MA 4 HOH B 1 2001 2001 HOH HOH . MA 4 HOH B 2 2002 2002 HOH HOH . MA 4 HOH B 3 2003 2003 HOH HOH . MA 4 HOH B 4 2004 2004 HOH HOH . MA 4 HOH B 5 2005 2005 HOH HOH . MA 4 HOH B 6 2006 2006 HOH HOH . MA 4 HOH B 7 2007 2007 HOH HOH . MA 4 HOH B 8 2008 2008 HOH HOH . MA 4 HOH B 9 2009 2009 HOH HOH . MA 4 HOH B 10 2010 2010 HOH HOH . MA 4 HOH B 11 2011 2011 HOH HOH . MA 4 HOH B 12 2012 2012 HOH HOH . NA 4 HOH C 1 2001 2001 HOH HOH . NA 4 HOH C 2 2002 2002 HOH HOH . NA 4 HOH C 3 2003 2003 HOH HOH . NA 4 HOH C 4 2004 2004 HOH HOH . NA 4 HOH C 5 2005 2005 HOH HOH . NA 4 HOH C 6 2006 2006 HOH HOH . NA 4 HOH C 7 2007 2007 HOH HOH . NA 4 HOH C 8 2008 2008 HOH HOH . NA 4 HOH C 9 2009 2009 HOH HOH . NA 4 HOH C 10 2010 2010 HOH HOH . NA 4 HOH C 11 2011 2011 HOH HOH . NA 4 HOH C 12 2012 2012 HOH HOH . NA 4 HOH C 13 2013 2013 HOH HOH . OA 4 HOH D 1 2001 2001 HOH HOH . OA 4 HOH D 2 2002 2002 HOH HOH . OA 4 HOH D 3 2003 2003 HOH HOH . OA 4 HOH D 4 2004 2004 HOH HOH . OA 4 HOH D 5 2005 2005 HOH HOH . OA 4 HOH D 6 2006 2006 HOH HOH . OA 4 HOH D 7 2007 2007 HOH HOH . OA 4 HOH D 8 2008 2008 HOH HOH . OA 4 HOH D 9 2009 2009 HOH HOH . OA 4 HOH D 10 2010 2010 HOH HOH . OA 4 HOH D 11 2011 2011 HOH HOH . PA 4 HOH E 1 2001 2001 HOH HOH . PA 4 HOH E 2 2002 2002 HOH HOH . PA 4 HOH E 3 2003 2003 HOH HOH . PA 4 HOH E 4 2004 2004 HOH HOH . PA 4 HOH E 5 2005 2005 HOH HOH . PA 4 HOH E 6 2006 2006 HOH HOH . PA 4 HOH E 7 2007 2007 HOH HOH . PA 4 HOH E 8 2008 2008 HOH HOH . PA 4 HOH E 9 2009 2009 HOH HOH . PA 4 HOH E 10 2010 2010 HOH HOH . QA 4 HOH F 1 2001 2001 HOH HOH . QA 4 HOH F 2 2002 2002 HOH HOH . QA 4 HOH F 3 2003 2003 HOH HOH . QA 4 HOH F 4 2004 2004 HOH HOH . QA 4 HOH F 5 2005 2005 HOH HOH . QA 4 HOH F 6 2006 2006 HOH HOH . QA 4 HOH F 7 2007 2007 HOH HOH . QA 4 HOH F 8 2008 2008 HOH HOH . QA 4 HOH F 9 2009 2009 HOH HOH . QA 4 HOH F 10 2010 2010 HOH HOH . QA 4 HOH F 11 2011 2011 HOH HOH . QA 4 HOH F 12 2012 2012 HOH HOH . RA 4 HOH G 1 2001 2001 HOH HOH . RA 4 HOH G 2 2002 2002 HOH HOH . RA 4 HOH G 3 2003 2003 HOH HOH . RA 4 HOH G 4 2004 2004 HOH HOH . RA 4 HOH G 5 2005 2005 HOH HOH . RA 4 HOH G 6 2006 2006 HOH HOH . RA 4 HOH G 7 2007 2007 HOH HOH . RA 4 HOH G 8 2008 2008 HOH HOH . RA 4 HOH G 9 2009 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 2 23.117 0.764 30.59 1 74.39 ? C1 EDO 1459 A 1 HETATM 2 O O1 EDO . . . H 2 24.521 0.935 30.331 1 78.49 ? O1 EDO 1459 A 1 HETATM 3 C C2 EDO . . . H 2 22.338 0.691 29.284 1 76.33 ? C2 EDO 1459 A 1 HETATM 4 O O2 EDO . . . H 2 21.245 -0.23 29.382 1 79.87 ? O2 EDO 1459 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #