data_2YFE
#
_model_server_result.job_id            a1tHu8rGfI8EGavEkubkGg 
_model_server_result.datetime_utc      '2024-10-12 17:23:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yfe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":999}' 
#
_entry.id    2YFE 
#
_exptl.entry_id    2YFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.413 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Amorfrutin 1' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.78 
_cell.angle_gamma         90 
_cell.entry_id            2YFE 
_cell.length_a            92.81 
_cell.length_b            61.1 
_cell.length_c            118.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H24 O4' 
_chem_comp.formula_weight    340.413 
_chem_comp.id                YFE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Amorfrutin 1' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAR YFE sing 348 n n 
CAR CAC YFE sing 349 n n 
CAR CAG YFE doub 350 n n 
CAG CAN YFE sing 351 n n 
CAN CAX YFE sing 352 n n 
CAX CAW YFE sing 353 n y 
CAX CAU YFE doub 354 n y 
CAW CAM YFE doub 355 n y 
CAW OAQ YFE sing 356 n n 
CAM CAV YFE sing 357 n y 
OAQ CAA YFE sing 358 n n 
CAU OAF YFE sing 359 n n 
CAU CAY YFE sing 360 n y 
CAY CAS YFE sing 361 n n 
CAY CAV YFE doub 362 n y 
CAS OAE YFE sing 363 n n 
CAS OAD YFE doub 364 n n 
CAV CAP YFE sing 365 n n 
CAP CAO YFE sing 366 n n 
CAO CAT YFE sing 367 n n 
CAT CAK YFE sing 368 n y 
CAT CAL YFE doub 369 n y 
CAK CAI YFE doub 370 n y 
CAI CAH YFE sing 371 n y 
CAH CAJ YFE doub 372 n y 
CAJ CAL YFE sing 373 n y 
CAB HAB1 YFE sing 374 n n 
CAB HAB2 YFE sing 375 n n 
CAB HAB3 YFE sing 376 n n 
CAC HAC1 YFE sing 377 n n 
CAC HAC2 YFE sing 378 n n 
CAC HAC3 YFE sing 379 n n 
CAG HAG YFE sing 380 n n 
CAN HAN1 YFE sing 381 n n 
CAN HAN2 YFE sing 382 n n 
CAM HAM YFE sing 383 n n 
CAA HAA1 YFE sing 384 n n 
CAA HAA2 YFE sing 385 n n 
CAA HAA3 YFE sing 386 n n 
OAF HAF YFE sing 387 n n 
OAE HAE YFE sing 388 n n 
CAP HAP1 YFE sing 389 n n 
CAP HAP2 YFE sing 390 n n 
CAO HAO1 YFE sing 391 n n 
CAO HAO2 YFE sing 392 n n 
CAK HAK YFE sing 393 n n 
CAL HAL YFE sing 394 n n 
CAI HAI YFE sing 395 n n 
CAH HAH YFE sing 396 n n 
CAJ HAJ YFE sing 397 n n 
#
_atom_sites.entry_id                     2YFE 
_atom_sites.fract_transf_matrix[1][1]    0.010775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016367 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YFE A 1 999 999 YFE YFE . 
D 2 YFE B 1 999 999 YFE YFE . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
E 3 HOH A 20 2020 2020 HOH HOH . 
E 3 HOH A 21 2021 2021 HOH HOH . 
E 3 HOH A 22 2022 2022 HOH HOH . 
E 3 HOH A 23 2023 2023 HOH HOH . 
E 3 HOH A 24 2024 2024 HOH HOH . 
E 3 HOH A 25 2025 2025 HOH HOH . 
E 3 HOH A 26 2026 2026 HOH HOH . 
E 3 HOH A 27 2027 2027 HOH HOH . 
E 3 HOH A 28 2028 2028 HOH HOH . 
E 3 HOH A 29 2029 2029 HOH HOH . 
E 3 HOH A 30 2030 2030 HOH HOH . 
E 3 HOH A 31 2031 2031 HOH HOH . 
E 3 HOH A 32 2032 2032 HOH HOH . 
E 3 HOH A 33 2033 2033 HOH HOH . 
E 3 HOH A 34 2034 2034 HOH HOH . 
E 3 HOH A 35 2035 2035 HOH HOH . 
E 3 HOH A 36 2036 2036 HOH HOH . 
E 3 HOH A 37 2037 2037 HOH HOH . 
E 3 HOH A 38 2038 2038 HOH HOH . 
E 3 HOH A 39 2039 2039 HOH HOH . 
E 3 HOH A 40 2040 2040 HOH HOH . 
E 3 HOH A 41 2041 2041 HOH HOH . 
E 3 HOH A 42 2042 2042 HOH HOH . 
E 3 HOH A 43 2043 2043 HOH HOH . 
E 3 HOH A 44 2044 2044 HOH HOH . 
E 3 HOH A 45 2045 2045 HOH HOH . 
E 3 HOH A 46 2046 2046 HOH HOH . 
E 3 HOH A 47 2047 2047 HOH HOH . 
E 3 HOH A 48 2048 2048 HOH HOH . 
E 3 HOH A 49 2049 2049 HOH HOH . 
E 3 HOH A 50 2050 2050 HOH HOH . 
E 3 HOH A 51 2051 2051 HOH HOH . 
E 3 HOH A 52 2052 2052 HOH HOH . 
E 3 HOH A 53 2053 2053 HOH HOH . 
E 3 HOH A 54 2054 2054 HOH HOH . 
E 3 HOH A 55 2055 2055 HOH HOH . 
E 3 HOH A 56 2056 2056 HOH HOH . 
E 3 HOH A 57 2057 2057 HOH HOH . 
E 3 HOH A 58 2058 2058 HOH HOH . 
E 3 HOH A 59 2059 2059 HOH HOH . 
E 3 HOH A 60 2060 2060 HOH HOH . 
E 3 HOH A 61 2061 2061 HOH HOH . 
E 3 HOH A 62 2062 2062 HOH HOH . 
E 3 HOH A 63 2063 2063 HOH HOH . 
E 3 HOH A 64 2064 2064 HOH HOH . 
E 3 HOH A 65 2065 2065 HOH HOH . 
E 3 HOH A 66 2066 2066 HOH HOH . 
E 3 HOH A 67 2067 2067 HOH HOH . 
E 3 HOH A 68 2068 2068 HOH HOH . 
E 3 HOH A 69 2069 2069 HOH HOH . 
E 3 HOH A 70 2070 2070 HOH HOH . 
E 3 HOH A 71 2071 2071 HOH HOH . 
E 3 HOH A 72 2072 2072 HOH HOH . 
E 3 HOH A 73 2073 2073 HOH HOH . 
E 3 HOH A 74 2074 2074 HOH HOH . 
E 3 HOH A 75 2075 2075 HOH HOH . 
E 3 HOH A 76 2076 2076 HOH HOH . 
E 3 HOH A 77 2077 2077 HOH HOH . 
E 3 HOH A 78 2078 2078 HOH HOH . 
E 3 HOH A 79 2079 2079 HOH HOH . 
E 3 HOH A 80 2080 2080 HOH HOH . 
E 3 HOH A 81 2081 2081 HOH HOH . 
E 3 HOH A 82 2082 2082 HOH HOH . 
E 3 HOH A 83 2083 2083 HOH HOH . 
E 3 HOH A 84 2084 2084 HOH HOH . 
E 3 HOH A 85 2085 2085 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
F 3 HOH B 15 2015 2015 HOH HOH . 
F 3 HOH B 16 2016 2016 HOH HOH . 
F 3 HOH B 17 2017 2017 HOH HOH . 
F 3 HOH B 18 2018 2018 HOH HOH . 
F 3 HOH B 19 2019 2019 HOH HOH . 
F 3 HOH B 20 2020 2020 HOH HOH . 
F 3 HOH B 21 2021 2021 HOH HOH . 
F 3 HOH B 22 2022 2022 HOH HOH . 
F 3 HOH B 23 2023 2023 HOH HOH . 
F 3 HOH B 24 2024 2024 HOH HOH . 
F 3 HOH B 25 2025 2025 HOH HOH . 
F 3 HOH B 26 2026 2026 HOH HOH . 
F 3 HOH B 27 2027 2027 HOH HOH . 
F 3 HOH B 28 2028 2028 HOH HOH . 
F 3 HOH B 29 2029 2029 HOH HOH . 
F 3 HOH B 30 2030 2030 HOH HOH . 
F 3 HOH B 31 2031 2031 HOH HOH . 
F 3 HOH B 32 2032 2032 HOH HOH . 
F 3 HOH B 33 2033 2033 HOH HOH . 
F 3 HOH B 34 2034 2034 HOH HOH . 
F 3 HOH B 35 2035 2035 HOH HOH . 
F 3 HOH B 36 2036 2036 HOH HOH . 
F 3 HOH B 37 2037 2037 HOH HOH . 
F 3 HOH B 38 2038 2038 HOH HOH . 
F 3 HOH B 39 2039 2039 HOH HOH . 
F 3 HOH B 40 2040 2040 HOH HOH . 
F 3 HOH B 41 2041 2041 HOH HOH . 
F 3 HOH B 42 2042 2042 HOH HOH . 
F 3 HOH B 43 2043 2043 HOH HOH . 
F 3 HOH B 44 2044 2044 HOH HOH . 
F 3 HOH B 45 2045 2045 HOH HOH . 
F 3 HOH B 46 2046 2046 HOH HOH . 
F 3 HOH B 47 2047 2047 HOH HOH . 
F 3 HOH B 48 2048 2048 HOH HOH . 
F 3 HOH B 49 2049 2049 HOH HOH . 
F 3 HOH B 50 2050 2050 HOH HOH . 
F 3 HOH B 51 2051 2051 HOH HOH . 
F 3 HOH B 52 2052 2052 HOH HOH . 
F 3 HOH B 53 2053 2053 HOH HOH . 
F 3 HOH B 54 2054 2054 HOH HOH . 
F 3 HOH B 55 2055 2055 HOH HOH . 
F 3 HOH B 56 2056 2056 HOH HOH . 
F 3 HOH B 57 2057 2057 HOH HOH . 
F 3 HOH B 58 2058 2058 HOH HOH . 
F 3 HOH B 59 2059 2059 HOH HOH . 
F 3 HOH B 60 2060 2060 HOH HOH . 
F 3 HOH B 61 2061 2061 HOH HOH . 
F 3 HOH B 62 2062 2062 HOH HOH . 
F 3 HOH B 63 2063 2063 HOH HOH . 
F 3 HOH B 64 2064 2064 HOH HOH . 
F 3 HOH B 65 2065 2065 HOH HOH . 
F 3 HOH B 66 2066 2066 HOH HOH . 
F 3 HOH B 67 2067 2067 HOH HOH . 
F 3 HOH B 68 2068 2068 HOH HOH . 
F 3 HOH B 69 2069 2069 HOH HOH . 
F 3 HOH B 70 2070 2070 HOH HOH . 
F 3 HOH B 71 2071 2071 HOH HOH . 
F 3 HOH B 72 2072 2072 HOH HOH . 
F 3 HOH B 73 2073 2073 HOH HOH . 
F 3 HOH B 74 2074 2074 HOH HOH . 
F 3 HOH B 75 2075 2075 HOH HOH . 
F 3 HOH B 76 2076 2076 HOH HOH . 
F 3 HOH B 77 2077 2077 HOH HOH . 
F 3 HOH B 78 2078 2078 HOH HOH . 
F 3 HOH B 79 2079 2079 HOH HOH . 
F 3 HOH B 80 2080 2080 HOH HOH . 
F 3 HOH B 81 2081 2081 HOH HOH . 
F 3 HOH B 82 2082 2082 HOH HOH . 
F 3 HOH B 83 2083 2083 HOH HOH . 
F 3 HOH B 84 2084 2084 HOH HOH . 
F 3 HOH B 85 2085 2085 HOH HOH . 
F 3 HOH B 86 2086 2086 HOH HOH . 
F 3 HOH B 87 2087 2087 HOH HOH . 
F 3 HOH B 88 2088 2088 HOH HOH . 
F 3 HOH B 89 2089 2089 HOH HOH . 
F 3 HOH B 90 2090 2090 HOH HOH . 
F 3 HOH B 91 2091 2091 HOH HOH . 
F 3 HOH B 92 2092 2092 HOH HOH . 
F 3 HOH B 93 2093 2093 HOH HOH . 
F 3 HOH B 94 2094 2094 HOH HOH . 
F 3 HOH B 95 2095 2095 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB YFE . . . C 2 18.664 17.511 44.248 0.99 42.4 ? CAB YFE 999 A 1 
HETATM 2 C CAR YFE . . . C 2 17.179 17.81 44.524 0.99 43.38 ? CAR YFE 999 A 1 
HETATM 3 C CAC YFE . . . C 2 16.208 17.733 43.322 0.99 43.44 ? CAC YFE 999 A 1 
HETATM 4 C CAG YFE . . . C 2 16.66 18.118 45.8 0.99 42.43 ? CAG YFE 999 A 1 
HETATM 5 C CAN YFE . . . C 2 17.227 18.266 47.078 0.99 42.52 ? CAN YFE 999 A 1 
HETATM 6 C CAX YFE . . . C 2 16.904 19.693 47.609 0.99 41.17 ? CAX YFE 999 A 1 
HETATM 7 C CAW YFE . . . C 2 15.597 20.168 47.737 0.99 41.55 ? CAW YFE 999 A 1 
HETATM 8 C CAM YFE . . . C 2 15.321 21.457 48.194 0.99 39.14 ? CAM YFE 999 A 1 
HETATM 9 O OAQ YFE . . . C 2 14.552 19.357 47.413 0.99 43.27 ? OAQ YFE 999 A 1 
HETATM 10 C CAA YFE . . . C 2 13.413 19.63 48.276 0.99 41.84 ? CAA YFE 999 A 1 
HETATM 11 C CAU YFE . . . C 2 17.923 20.569 47.984 0.99 40.73 ? CAU YFE 999 A 1 
HETATM 12 O OAF YFE . . . C 2 19.216 20.159 47.89 0.99 42.34 ? OAF YFE 999 A 1 
HETATM 13 C CAY YFE . . . C 2 17.663 21.863 48.441 0.99 40.3 ? CAY YFE 999 A 1 
HETATM 14 C CAS YFE . . . C 2 18.862 22.751 48.828 0.99 40.18 ? CAS YFE 999 A 1 
HETATM 15 O OAE YFE . . . C 2 19.99 22.204 48.847 0.99 39.97 ? OAE YFE 999 A 1 
HETATM 16 O OAD YFE . . . C 2 18.655 23.948 49.134 0.99 39.97 ? OAD YFE 999 A 1 
HETATM 17 C CAV YFE . . . C 2 16.341 22.318 48.569 0.99 40.88 ? CAV YFE 999 A 1 
HETATM 18 C CAP YFE . . . C 2 15.904 23.717 49.039 0.99 40.11 ? CAP YFE 999 A 1 
HETATM 19 C CAO YFE . . . C 2 15.712 23.837 50.54 0.99 43.71 ? CAO YFE 999 A 1 
HETATM 20 C CAT YFE . . . C 2 15.198 25.23 50.954 0.99 46.16 ? CAT YFE 999 A 1 
HETATM 21 C CAK YFE . . . C 2 14.802 26.175 50.009 0.99 47.45 ? CAK YFE 999 A 1 
HETATM 22 C CAI YFE . . . C 2 14.335 27.432 50.413 0.99 48.38 ? CAI YFE 999 A 1 
HETATM 23 C CAH YFE . . . C 2 14.27 27.741 51.771 0.99 49.62 ? CAH YFE 999 A 1 
HETATM 24 C CAJ YFE . . . C 2 14.667 26.795 52.728 0.99 49.7 ? CAJ YFE 999 A 1 
HETATM 25 C CAL YFE . . . C 2 15.13 25.547 52.313 0.99 47.98 ? CAL YFE 999 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#