data_2YG7
#
_model_server_result.job_id            fur9DeObR7dqkEH9MUSpBw 
_model_server_result.datetime_utc      '2024-10-19 14:16:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yg7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":600}' 
#
_entry.id    2YG7 
#
_exptl.entry_id    2YG7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YG7 
_cell.length_a            114.01 
_cell.length_b            120.39 
_cell.length_c            171.41 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YG7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             394 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              394 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            C8M 
_struct_conn.ptnr2_label_comp_id            FAD 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             FAD 
_struct_conn.ptnr2_auth_seq_id              600 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        B 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.616 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     2YG7 
_atom_sites.fract_transf_matrix[1][1]    0.008771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 600 600 FAD FAD . 
D 2 FAD B 1 600 600 FAD FAD . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
E 3 HOH A 20 2020 2020 HOH HOH . 
E 3 HOH A 21 2021 2021 HOH HOH . 
E 3 HOH A 22 2022 2022 HOH HOH . 
E 3 HOH A 23 2023 2023 HOH HOH . 
E 3 HOH A 24 2024 2024 HOH HOH . 
E 3 HOH A 25 2025 2025 HOH HOH . 
E 3 HOH A 26 2026 2026 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 5.376 -14.822 -1.665 1 21.28 ? PA FAD 600 A 1 
HETATM 2 O O1A FAD . . . C 2 4.131 -15.585 -1.44 1 21.47 ? O1A FAD 600 A 1 
HETATM 3 O O2A FAD . . . C 2 5.192 -13.316 -1.457 1 20.82 ? O2A FAD 600 A 1 
HETATM 4 O O5B FAD . . . C 2 5.889 -15.155 -3.132 1 23.32 ? O5B FAD 600 A 1 
HETATM 5 C C5B FAD . . . C 2 5.579 -16.396 -3.745 1 22.19 ? C5B FAD 600 A 1 
HETATM 6 C C4B FAD . . . C 2 5.195 -16.166 -5.199 1 21.45 ? C4B FAD 600 A 1 
HETATM 7 O O4B FAD . . . C 2 5.175 -17.42 -5.784 1 20.37 ? O4B FAD 600 A 1 
HETATM 8 C C3B FAD . . . C 2 3.791 -15.621 -5.401 1 22.23 ? C3B FAD 600 A 1 
HETATM 9 O O3B FAD . . . C 2 3.866 -14.493 -6.237 1 24.42 ? O3B FAD 600 A 1 
HETATM 10 C C2B FAD . . . C 2 3.016 -16.744 -6.068 1 21.35 ? C2B FAD 600 A 1 
HETATM 11 O O2B FAD . . . C 2 2.132 -16.34 -7.075 1 21.04 ? O2B FAD 600 A 1 
HETATM 12 C C1B FAD . . . C 2 4.128 -17.478 -6.736 1 20.69 ? C1B FAD 600 A 1 
HETATM 13 N N9A FAD . . . C 2 3.856 -18.887 -7.026 1 18.89 ? N9A FAD 600 A 1 
HETATM 14 C C8A FAD . . . C 2 3.433 -19.848 -6.157 1 17.57 ? C8A FAD 600 A 1 
HETATM 15 N N7A FAD . . . C 2 3.388 -21.028 -6.814 1 18.46 ? N7A FAD 600 A 1 
HETATM 16 C C5A FAD . . . C 2 3.785 -20.834 -8.088 1 18.79 ? C5A FAD 600 A 1 
HETATM 17 C C6A FAD . . . C 2 3.911 -21.697 -9.171 1 18.46 ? C6A FAD 600 A 1 
HETATM 18 N N6A FAD . . . C 2 3.636 -23.008 -9.054 1 16.65 ? N6A FAD 600 A 1 
HETATM 19 N N1A FAD . . . C 2 4.345 -21.162 -10.367 1 17.87 ? N1A FAD 600 A 1 
HETATM 20 C C2A FAD . . . C 2 4.653 -19.825 -10.486 1 18.53 ? C2A FAD 600 A 1 
HETATM 21 N N3A FAD . . . C 2 4.53 -18.984 -9.409 1 19.79 ? N3A FAD 600 A 1 
HETATM 22 C C4A FAD . . . C 2 4.098 -19.486 -8.232 1 18.89 ? C4A FAD 600 A 1 
HETATM 23 N N1 FAD . . . C 2 5.422 -8.974 6.115 1 48.29 ? N1 FAD 600 A 1 
HETATM 24 C C2 FAD . . . C 2 6.11 -7.904 6.662 1 49.26 ? C2 FAD 600 A 1 
HETATM 25 O O2 FAD . . . C 2 7.305 -7.688 6.344 1 50.8 ? O2 FAD 600 A 1 
HETATM 26 N N3 FAD . . . C 2 5.381 -7.025 7.462 1 47.79 ? N3 FAD 600 A 1 
HETATM 27 C C4 FAD . . . C 2 3.991 -7.115 7.556 1 46.88 ? C4 FAD 600 A 1 
HETATM 28 O O4 FAD . . . C 2 3.314 -6.084 7.753 1 46.89 ? O4 FAD 600 A 1 
HETATM 29 C C4X FAD . . . C 2 3.363 -8.345 7.238 1 46.76 ? C4X FAD 600 A 1 
HETATM 30 N N5 FAD . . . C 2 1.949 -8.44 7.241 1 45.24 ? N5 FAD 600 A 1 
HETATM 31 C C5X FAD . . . C 2 1.303 -9.278 6.296 1 44.57 ? C5X FAD 600 A 1 
HETATM 32 C C6 FAD . . . C 2 -0.111 -9.316 6.137 1 42.35 ? C6 FAD 600 A 1 
HETATM 33 C C7 FAD . . . C 2 -0.743 -10.283 5.318 1 39.52 ? C7 FAD 600 A 1 
HETATM 34 C C7M FAD . . . C 2 -2.243 -10.282 5.259 1 37.43 ? C7M FAD 600 A 1 
HETATM 35 C C8 FAD . . . C 2 0.051 -11.205 4.589 1 40.24 ? C8 FAD 600 A 1 
HETATM 36 C C8M FAD . . . C 2 -0.492 -12.254 3.655 1 37.8 ? C8M FAD 600 A 1 
HETATM 37 C C9 FAD . . . C 2 1.442 -11.154 4.7 1 41.52 ? C9 FAD 600 A 1 
HETATM 38 C C9A FAD . . . C 2 2.074 -10.224 5.559 1 43.94 ? C9A FAD 600 A 1 
HETATM 39 N N10 FAD . . . C 2 3.437 -10.356 5.831 1 43.45 ? N10 FAD 600 A 1 
HETATM 40 C C10 FAD . . . C 2 4.125 -9.323 6.524 1 46.27 ? C10 FAD 600 A 1 
HETATM 41 C C1' FAD . . . C 2 4.12 -11.544 5.196 1 39.68 ? C1' FAD 600 A 1 
HETATM 42 C C2' FAD . . . C 2 4.918 -11.188 3.94 1 35.85 ? C2' FAD 600 A 1 
HETATM 43 O O2' FAD . . . C 2 4.073 -10.556 3.011 1 37.08 ? O2' FAD 600 A 1 
HETATM 44 C C3' FAD . . . C 2 5.494 -12.462 3.332 1 33.01 ? C3' FAD 600 A 1 
HETATM 45 O O3' FAD . . . C 2 6.101 -13.252 4.343 1 32.33 ? O3' FAD 600 A 1 
HETATM 46 C C4' FAD . . . C 2 6.463 -12.212 2.174 1 31.18 ? C4' FAD 600 A 1 
HETATM 47 O O4' FAD . . . C 2 5.818 -11.495 1.116 1 31.57 ? O4' FAD 600 A 1 
HETATM 48 C C5' FAD . . . C 2 6.98 -13.571 1.682 1 29.71 ? C5' FAD 600 A 1 
HETATM 49 O O5' FAD . . . C 2 7.283 -13.536 0.31 1 28.35 ? O5' FAD 600 A 1 
HETATM 50 P P FAD . . . C 2 7.907 -14.799 -0.417 1 23.34 ? P FAD 600 A 1 
HETATM 51 O O1P FAD . . . C 2 8.711 -14.304 -1.553 1 27.08 ? O1P FAD 600 A 1 
HETATM 52 O O2P FAD . . . C 2 8.702 -15.697 0.533 1 23.08 ? O2P FAD 600 A 1 
HETATM 53 O O3P FAD . . . C 2 6.575 -15.531 -0.886 1 22.99 ? O3P FAD 600 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#