data_2YGG
#
_model_server_result.job_id            OMiczONZqEdLxUgfKF08zQ 
_model_server_result.datetime_utc      '2024-12-26 13:50:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ygg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1153}' 
#
_entry.id    2YGG 
#
_exptl.entry_id    2YGG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.35 
_cell.angle_gamma         90 
_cell.entry_id            2YGG 
_cell.length_a            200.7 
_cell.length_b            38.35 
_cell.length_c            34.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 21 B ASP 21 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc2 B OD1 ASP 23 B ASP 23 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? 
metalc ? metalc3 B OD2 ASP 23 B ASP 23 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? 
metalc ? metalc4 B OD1 ASP 25 B ASP 25 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc5 B OD2 ASP 25 B ASP 25 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? 
metalc ? metalc6 B O THR 27 B THR 27 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc7 B OE1 GLU 32 B GLU 32 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc8 B OE2 GLU 32 B GLU 32 1_555 G CA CA . B CA 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc9 B OD1 ASP 57 B ASP 57 1_555 F CA CA . B CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc10 B OD1 ASP 59 B ASP 59 1_555 F CA CA . B CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc11 B OD1 ASN 61 B ASN 61 1_555 F CA CA . B CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc12 B O THR 63 B THR 63 1_555 F CA CA . B CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc13 B OE1 GLU 68 B GLU 68 1_555 F CA CA . B CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? 
metalc ? metalc14 B OE2 GLU 68 B GLU 68 1_555 F CA CA . B CA 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc15 B OD1 ASP 94 B ASP 94 1_555 E CA CA . B CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc16 B OD1 ASP 96 B ASP 96 1_555 E CA CA . B CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc17 B OD1 ASN 98 B ASN 98 1_555 E CA CA . B CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc18 B O TYR 100 B TYR 100 1_555 E CA CA . B CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc19 B OE2 GLU 105 B GLU 105 1_555 E CA CA . B CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc20 B OE1 GLU 105 B GLU 105 1_555 E CA CA . B CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc21 B OD1 ASP 130 B ASP 130 1_555 H CA CA . B CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc22 B OD1 ASP 132 B ASP 132 1_555 H CA CA . B CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc23 B OD1 ASP 134 B ASP 134 1_555 H CA CA . B CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc24 B O GLN 136 B GLN 136 1_555 H CA CA . B CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc25 B OE2 GLU 141 B GLU 141 1_555 H CA CA . B CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc26 B OE1 GLU 141 B GLU 141 1_555 H CA CA . B CA 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc27 E CA CA . B CA 1151 1_555 M O HOH . B HOH 2025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc28 F CA CA . B CA 1152 1_555 M O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? 
metalc ? metalc29 F CA CA . B CA 1152 1_555 M O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc30 G CA CA . B CA 1153 1_555 M O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc31 H CA CA . B CA 1154 1_555 M O HOH . B HOH 2053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2YGG 
_atom_sites.fract_transf_matrix[1][1]    0.004983 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000117 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029334 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MPD A 1 1686 1686 MPD MPD . 
D 4 TAM A 1 1687 1687 TAM TAM . 
E 5 CA B 1 1151 1151 CA CA . 
F 5 CA B 1 1152 1152 CA CA . 
G 5 CA B 1 1153 1153 CA CA . 
H 5 CA B 1 1154 1154 CA CA . 
I 6 MRD B 1 1155 1155 MRD MRD . 
J 4 TAM B 1 1156 1156 TAM TAM . 
K 4 TAM B 1 1157 1157 TAM TAM . 
L 7 HOH A 1 2001 2001 HOH HOH . 
L 7 HOH A 2 2002 2002 HOH HOH . 
L 7 HOH A 3 2003 2003 HOH HOH . 
L 7 HOH A 4 2004 2004 HOH HOH . 
L 7 HOH A 5 2005 2005 HOH HOH . 
L 7 HOH A 6 2006 2006 HOH HOH . 
L 7 HOH A 7 2007 2007 HOH HOH . 
L 7 HOH A 8 2008 2008 HOH HOH . 
L 7 HOH A 9 2009 2009 HOH HOH . 
L 7 HOH A 10 2010 2010 HOH HOH . 
L 7 HOH A 11 2011 2011 HOH HOH . 
L 7 HOH A 12 2012 2012 HOH HOH . 
L 7 HOH A 13 2013 2013 HOH HOH . 
L 7 HOH A 14 2014 2014 HOH HOH . 
L 7 HOH A 15 2015 2015 HOH HOH . 
L 7 HOH A 16 2016 2016 HOH HOH . 
L 7 HOH A 17 2017 2017 HOH HOH . 
L 7 HOH A 18 2018 2018 HOH HOH . 
L 7 HOH A 19 2019 2019 HOH HOH . 
L 7 HOH A 20 2020 2020 HOH HOH . 
L 7 HOH A 21 2021 2021 HOH HOH . 
L 7 HOH A 22 2022 2022 HOH HOH . 
L 7 HOH A 23 2023 2023 HOH HOH . 
L 7 HOH A 24 2024 2024 HOH HOH . 
L 7 HOH A 25 2025 2025 HOH HOH . 
L 7 HOH A 26 2026 2026 HOH HOH . 
L 7 HOH A 27 2027 2027 HOH HOH . 
L 7 HOH A 28 2028 2028 HOH HOH . 
L 7 HOH A 29 2029 2029 HOH HOH . 
L 7 HOH A 30 2030 2030 HOH HOH . 
L 7 HOH A 31 2031 2031 HOH HOH . 
L 7 HOH A 32 2032 2032 HOH HOH . 
L 7 HOH A 33 2033 2033 HOH HOH . 
L 7 HOH A 34 2034 2034 HOH HOH . 
L 7 HOH A 35 2035 2035 HOH HOH . 
L 7 HOH A 36 2036 2036 HOH HOH . 
L 7 HOH A 37 2037 2037 HOH HOH . 
L 7 HOH A 38 2038 2038 HOH HOH . 
L 7 HOH A 39 2039 2039 HOH HOH . 
L 7 HOH A 40 2040 2040 HOH HOH . 
L 7 HOH A 41 2041 2041 HOH HOH . 
L 7 HOH A 42 2042 2042 HOH HOH . 
L 7 HOH A 43 2043 2043 HOH HOH . 
L 7 HOH A 44 2044 2044 HOH HOH . 
L 7 HOH A 45 2045 2045 HOH HOH . 
L 7 HOH A 46 2046 2046 HOH HOH . 
M 7 HOH B 1 2001 2001 HOH HOH . 
M 7 HOH B 2 2002 2002 HOH HOH . 
M 7 HOH B 3 2003 2003 HOH HOH . 
M 7 HOH B 4 2004 2004 HOH HOH . 
M 7 HOH B 5 2005 2005 HOH HOH . 
M 7 HOH B 6 2006 2006 HOH HOH . 
M 7 HOH B 7 2007 2007 HOH HOH . 
M 7 HOH B 8 2008 2008 HOH HOH . 
M 7 HOH B 9 2009 2009 HOH HOH . 
M 7 HOH B 10 2010 2010 HOH HOH . 
M 7 HOH B 11 2011 2011 HOH HOH . 
M 7 HOH B 12 2012 2012 HOH HOH . 
M 7 HOH B 13 2013 2013 HOH HOH . 
M 7 HOH B 14 2014 2014 HOH HOH . 
M 7 HOH B 15 2015 2015 HOH HOH . 
M 7 HOH B 16 2016 2016 HOH HOH . 
M 7 HOH B 17 2017 2017 HOH HOH . 
M 7 HOH B 18 2018 2018 HOH HOH . 
M 7 HOH B 19 2019 2019 HOH HOH . 
M 7 HOH B 20 2020 2020 HOH HOH . 
M 7 HOH B 21 2021 2021 HOH HOH . 
M 7 HOH B 22 2022 2022 HOH HOH . 
M 7 HOH B 23 2023 2023 HOH HOH . 
M 7 HOH B 24 2024 2024 HOH HOH . 
M 7 HOH B 25 2025 2025 HOH HOH . 
M 7 HOH B 26 2026 2026 HOH HOH . 
M 7 HOH B 27 2027 2027 HOH HOH . 
M 7 HOH B 28 2028 2028 HOH HOH . 
M 7 HOH B 29 2029 2029 HOH HOH . 
M 7 HOH B 30 2030 2030 HOH HOH . 
M 7 HOH B 31 2031 2031 HOH HOH . 
M 7 HOH B 32 2032 2032 HOH HOH . 
M 7 HOH B 33 2033 2033 HOH HOH . 
M 7 HOH B 34 2034 2034 HOH HOH . 
M 7 HOH B 35 2035 2035 HOH HOH . 
M 7 HOH B 36 2036 2036 HOH HOH . 
M 7 HOH B 37 2037 2037 HOH HOH . 
M 7 HOH B 38 2038 2038 HOH HOH . 
M 7 HOH B 39 2039 2039 HOH HOH . 
M 7 HOH B 40 2040 2040 HOH HOH . 
M 7 HOH B 41 2041 2041 HOH HOH . 
M 7 HOH B 42 2042 2042 HOH HOH . 
M 7 HOH B 43 2043 2043 HOH HOH . 
M 7 HOH B 44 2044 2044 HOH HOH . 
M 7 HOH B 45 2045 2045 HOH HOH . 
M 7 HOH B 46 2046 2046 HOH HOH . 
M 7 HOH B 47 2047 2047 HOH HOH . 
M 7 HOH B 48 2048 2048 HOH HOH . 
M 7 HOH B 49 2049 2049 HOH HOH . 
M 7 HOH B 50 2050 2050 HOH HOH . 
M 7 HOH B 51 2051 2051 HOH HOH . 
M 7 HOH B 52 2053 2053 HOH HOH . 
M 7 HOH B 53 2054 2054 HOH HOH . 
M 7 HOH B 54 2055 2055 HOH HOH . 
M 7 HOH B 55 2056 2056 HOH HOH . 
M 7 HOH B 56 2057 2057 HOH HOH . 
M 7 HOH B 57 2058 2058 HOH HOH . 
M 7 HOH B 58 2059 2059 HOH HOH . 
M 7 HOH B 59 2060 2060 HOH HOH . 
M 7 HOH B 60 2061 2061 HOH HOH . 
M 7 HOH B 61 2062 2062 HOH HOH . 
M 7 HOH B 62 2063 2063 HOH HOH . 
M 7 HOH B 63 2064 2064 HOH HOH . 
M 7 HOH B 64 2065 2065 HOH HOH . 
M 7 HOH B 65 2066 2066 HOH HOH . 
M 7 HOH B 66 2067 2067 HOH HOH . 
M 7 HOH B 67 2068 2068 HOH HOH . 
M 7 HOH B 68 2069 2069 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               13.166 
_atom_site.Cartn_y               -0.349 
_atom_site.Cartn_z               20.922 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        75.78 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1153 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#