data_2YGU
#
_model_server_result.job_id            kZbHhWqVLTG265YQKesf3Q 
_model_server_result.datetime_utc      '2025-01-10 10:53:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ygu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1120}' 
#
_entry.id    2YGU 
#
_exptl.entry_id    2YGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              100.202 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEPTANE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YGU 
_cell.length_a            110.211 
_cell.length_b            139.16 
_cell.length_c            62.093 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,Q,R 1 1 
C,D,K,L,S,T 2 1 
E,F,M,N,U,V 3 1 
G,H,O,P,W,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 A SG CYS 38 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 22 A CYS 22 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
disulf ? disulf3 A SG CYS 62 A CYS 62 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 82 A CYS 82 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 15 B CYS 15 1_555 B SG CYS 38 B CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 62 B CYS 62 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 B SG CYS 82 B CYS 82 1_555 B SG CYS 103 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 C SG CYS 15 C CYS 15 1_555 C SG CYS 38 C CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf9 C SG CYS 22 C CYS 22 1_555 D SG CYS 22 D CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
disulf ? disulf10 C SG CYS 62 C CYS 62 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf11 C SG CYS 82 C CYS 82 1_555 C SG CYS 103 C CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf12 D SG CYS 15 D CYS 15 1_555 D SG CYS 38 D CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf13 D SG CYS 62 D CYS 62 1_555 D SG CYS 75 D CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf14 D SG CYS 82 D CYS 82 1_555 D SG CYS 103 D CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf15 E SG CYS 15 E CYS 15 1_555 E SG CYS 38 E CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf16 E SG CYS 22 E CYS 22 1_555 F SG CYS 22 F CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
disulf ? disulf17 E SG CYS 62 E CYS 62 1_555 E SG CYS 75 E CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf18 E SG CYS 82 E CYS 82 1_555 E SG CYS 103 E CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf19 F SG CYS 15 F CYS 15 1_555 F SG CYS 38 F CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf20 F SG CYS 62 F CYS 62 1_555 F SG CYS 75 F CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf21 F SG CYS 82 F CYS 82 1_555 F SG CYS 103 F CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf22 G SG CYS 15 G CYS 15 1_555 G SG CYS 38 G CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf23 G SG CYS 22 G CYS 22 1_555 H SG CYS 22 H CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
disulf ? disulf24 G SG CYS 62 G CYS 62 1_555 G SG CYS 75 G CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf25 G SG CYS 82 G CYS 82 1_555 G SG CYS 103 G CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf26 H SG CYS 15 H CYS 15 1_555 H SG CYS 38 H CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf27 H SG CYS 62 H CYS 62 1_555 H SG CYS 75 H CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf28 H SG CYS 82 H CYS 82 1_555 H SG CYS 103 H CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C7 H16' 
_chem_comp.formula_weight    100.202 
_chem_comp.id                HP6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEPTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 C21 HP6 sing 152 n n 
C20 H201 HP6 sing 153 n n 
C20 H202 HP6 sing 154 n n 
C20 H203 HP6 sing 155 n n 
C21 C22 HP6 sing 156 n n 
C21 H211 HP6 sing 157 n n 
C21 H212 HP6 sing 158 n n 
C22 C23 HP6 sing 159 n n 
C22 H221 HP6 sing 160 n n 
C22 H222 HP6 sing 161 n n 
C23 C24 HP6 sing 162 n n 
C23 H231 HP6 sing 163 n n 
C23 H232 HP6 sing 164 n n 
C24 C25 HP6 sing 165 n n 
C24 H241 HP6 sing 166 n n 
C24 H242 HP6 sing 167 n n 
C25 C26 HP6 sing 168 n n 
C25 H251 HP6 sing 169 n n 
C25 H252 HP6 sing 170 n n 
C26 H261 HP6 sing 171 n n 
C26 H262 HP6 sing 172 n n 
C26 H263 HP6 sing 173 n n 
#
_atom_sites.entry_id                     2YGU 
_atom_sites.fract_transf_matrix[1][1]    0.009074 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016105 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 HP6 A 1 1118 1118 HP6 HP6 . 
J 2 HP6 B 1 1120 1120 HP6 HP6 . 
K 2 HP6 C 1 1119 1119 HP6 HP6 . 
L 2 HP6 D 1 1118 1118 HP6 HP6 . 
M 2 HP6 E 1 1120 1120 HP6 HP6 . 
N 2 HP6 F 1 1121 1121 HP6 HP6 . 
O 2 HP6 G 1 1119 1119 HP6 HP6 . 
P 2 HP6 H 1 1120 1120 HP6 HP6 . 
Q 3 HOH A 1 2001 2001 HOH HOH . 
Q 3 HOH A 2 2002 2002 HOH HOH . 
Q 3 HOH A 3 2003 2003 HOH HOH . 
Q 3 HOH A 4 2004 2004 HOH HOH . 
Q 3 HOH A 5 2005 2005 HOH HOH . 
Q 3 HOH A 6 2006 2006 HOH HOH . 
Q 3 HOH A 7 2007 2007 HOH HOH . 
Q 3 HOH A 8 2008 2008 HOH HOH . 
Q 3 HOH A 9 2009 2009 HOH HOH . 
Q 3 HOH A 10 2010 2010 HOH HOH . 
Q 3 HOH A 11 2011 2011 HOH HOH . 
Q 3 HOH A 12 2012 2012 HOH HOH . 
Q 3 HOH A 13 2013 2013 HOH HOH . 
Q 3 HOH A 14 2014 2014 HOH HOH . 
Q 3 HOH A 15 2015 2015 HOH HOH . 
Q 3 HOH A 16 2016 2016 HOH HOH . 
Q 3 HOH A 17 2017 2017 HOH HOH . 
Q 3 HOH A 18 2018 2018 HOH HOH . 
Q 3 HOH A 19 2019 2019 HOH HOH . 
Q 3 HOH A 20 2020 2020 HOH HOH . 
R 3 HOH B 1 2001 2001 HOH HOH . 
R 3 HOH B 2 2002 2002 HOH HOH . 
R 3 HOH B 3 2003 2003 HOH HOH . 
R 3 HOH B 4 2004 2004 HOH HOH . 
R 3 HOH B 5 2005 2005 HOH HOH . 
S 3 HOH C 1 2001 2001 HOH HOH . 
S 3 HOH C 2 2002 2002 HOH HOH . 
S 3 HOH C 3 2003 2003 HOH HOH . 
S 3 HOH C 4 2004 2004 HOH HOH . 
S 3 HOH C 5 2005 2005 HOH HOH . 
S 3 HOH C 6 2006 2006 HOH HOH . 
S 3 HOH C 7 2007 2007 HOH HOH . 
S 3 HOH C 8 2008 2008 HOH HOH . 
S 3 HOH C 9 2009 2009 HOH HOH . 
S 3 HOH C 10 2010 2010 HOH HOH . 
T 3 HOH D 1 2001 2001 HOH HOH . 
T 3 HOH D 2 2002 2002 HOH HOH . 
U 3 HOH E 1 2001 2001 HOH HOH . 
U 3 HOH E 2 2002 2002 HOH HOH . 
U 3 HOH E 3 2003 2003 HOH HOH . 
U 3 HOH E 4 2004 2004 HOH HOH . 
U 3 HOH E 5 2005 2005 HOH HOH . 
U 3 HOH E 6 2006 2006 HOH HOH . 
U 3 HOH E 7 2007 2007 HOH HOH . 
U 3 HOH E 8 2008 2008 HOH HOH . 
U 3 HOH E 9 2009 2009 HOH HOH . 
U 3 HOH E 10 2010 2010 HOH HOH . 
U 3 HOH E 11 2011 2011 HOH HOH . 
U 3 HOH E 12 2012 2012 HOH HOH . 
U 3 HOH E 13 2013 2013 HOH HOH . 
U 3 HOH E 14 2014 2014 HOH HOH . 
U 3 HOH E 15 2015 2015 HOH HOH . 
U 3 HOH E 16 2016 2016 HOH HOH . 
U 3 HOH E 17 2017 2017 HOH HOH . 
U 3 HOH E 18 2018 2018 HOH HOH . 
V 3 HOH F 1 2001 2001 HOH HOH . 
V 3 HOH F 2 2002 2002 HOH HOH . 
V 3 HOH F 3 2003 2003 HOH HOH . 
W 3 HOH G 1 2001 2001 HOH HOH . 
W 3 HOH G 2 2002 2002 HOH HOH . 
W 3 HOH G 3 2003 2003 HOH HOH . 
W 3 HOH G 4 2004 2004 HOH HOH . 
W 3 HOH G 5 2005 2005 HOH HOH . 
W 3 HOH G 6 2006 2006 HOH HOH . 
W 3 HOH G 7 2007 2007 HOH HOH . 
W 3 HOH G 8 2008 2008 HOH HOH . 
W 3 HOH G 9 2009 2009 HOH HOH . 
W 3 HOH G 10 2010 2010 HOH HOH . 
W 3 HOH G 11 2011 2011 HOH HOH . 
W 3 HOH G 12 2012 2012 HOH HOH . 
W 3 HOH G 13 2013 2013 HOH HOH . 
W 3 HOH G 14 2014 2014 HOH HOH . 
X 3 HOH H 1 2001 2001 HOH HOH . 
X 3 HOH H 2 2002 2002 HOH HOH . 
X 3 HOH H 3 2003 2003 HOH HOH . 
X 3 HOH H 4 2004 2004 HOH HOH . 
X 3 HOH H 5 2005 2005 HOH HOH . 
X 3 HOH H 6 2006 2006 HOH HOH . 
X 3 HOH H 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 HP6 . . . P 2 21.139 181.405 2.62 1 20.56 ? C20 HP6 1120 H 1 
HETATM 2 C C21 HP6 . . . P 2 22.624 181.646 2.344 1 18.83 ? C21 HP6 1120 H 1 
HETATM 3 C C22 HP6 . . . P 2 22.99 183.125 2.311 1 16.51 ? C22 HP6 1120 H 1 
HETATM 4 C C23 HP6 . . . P 2 23.767 183.454 1.034 1 23.77 ? C23 HP6 1120 H 1 
HETATM 5 C C24 HP6 . . . P 2 24.956 184.406 1.242 1 22.95 ? C24 HP6 1120 H 1 
HETATM 6 C C25 HP6 . . . P 2 24.949 185.491 0.154 1 29.27 ? C25 HP6 1120 H 1 
HETATM 7 C C26 HP6 . . . P 2 23.573 185.501 -0.571 1 16.42 ? C26 HP6 1120 H 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#