data_2YHD # _model_server_result.job_id utlVwbpyFZo-Bb3xoLPWuQ _model_server_result.datetime_utc '2024-11-28 07:01:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1920}' # _entry.id 2YHD # _exptl.entry_id 2YHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TESTOSTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YHD _cell.length_a 57.53 _cell.length_b 66.75 _cell.length_c 73.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H28 O2' _chem_comp.formula_weight 288.424 _chem_comp.id TES _chem_comp.mon_nstd_flag . _chem_comp.name TESTOSTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TES sing 332 n n C1 C10 TES sing 333 n n C1 H11 TES sing 334 n n C1 H12 TES sing 335 n n C2 C3 TES sing 336 n n C2 H21 TES sing 337 n n C2 H22 TES sing 338 n n C3 O3 TES doub 339 n n C3 C4 TES sing 340 n n C4 C5 TES doub 341 n n C4 H4 TES sing 342 n n C5 C6 TES sing 343 n n C5 C10 TES sing 344 n n C6 C7 TES sing 345 n n C6 H61 TES sing 346 n n C6 H62 TES sing 347 n n C7 C8 TES sing 348 n n C7 H71 TES sing 349 n n C7 H72 TES sing 350 n n C8 C9 TES sing 351 n n C8 C14 TES sing 352 n n C8 H8 TES sing 353 n n C9 C10 TES sing 354 n n C9 C11 TES sing 355 n n C9 H9 TES sing 356 n n C10 C19 TES sing 357 n n C11 C12 TES sing 358 n n C11 H111 TES sing 359 n n C11 H112 TES sing 360 n n C12 C13 TES sing 361 n n C12 H121 TES sing 362 n n C12 H122 TES sing 363 n n C13 C14 TES sing 364 n n C13 C17 TES sing 365 n n C13 C18 TES sing 366 n n C14 C15 TES sing 367 n n C14 H14 TES sing 368 n n C15 C16 TES sing 369 n n C15 H151 TES sing 370 n n C15 H152 TES sing 371 n n C16 C17 TES sing 372 n n C16 H161 TES sing 373 n n C16 H162 TES sing 374 n n C17 O17 TES sing 375 n n C17 H17 TES sing 376 n n O17 HO7 TES sing 377 n n C18 H181 TES sing 378 n n C18 H182 TES sing 379 n n C18 H183 TES sing 380 n n C19 H191 TES sing 381 n n C19 H192 TES sing 382 n n C19 H193 TES sing 383 n n # _atom_sites.entry_id 2YHD _atom_sites.fract_transf_matrix[1][1] 0.017382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1000 1000 SO4 SO4 . C 3 TES A 1 1920 1920 TES TES . D 4 AV6 A 1 1921 1921 AV6 AV6 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TES . . . C 3 27.798 4.771 5.181 1 20.58 ? C1 TES 1920 A 1 HETATM 2 C C2 TES . . . C 3 27.097 6.071 5.583 1 20.84 ? C2 TES 1920 A 1 HETATM 3 C C3 TES . . . C 3 25.679 5.96 5.134 1 18.29 ? C3 TES 1920 A 1 HETATM 4 O O3 TES . . . C 3 25.056 6.966 4.753 1 17.41 ? O3 TES 1920 A 1 HETATM 5 C C4 TES . . . C 3 25.052 4.611 5.159 1 16.99 ? C4 TES 1920 A 1 HETATM 6 C C5 TES . . . C 3 25.714 3.448 5.401 1 18.3 ? C5 TES 1920 A 1 HETATM 7 C C6 TES . . . C 3 24.929 2.13 5.24 1 14 ? C6 TES 1920 A 1 HETATM 8 C C7 TES . . . C 3 25.769 0.95 4.691 1 13.24 ? C7 TES 1920 A 1 HETATM 9 C C8 TES . . . C 3 27.175 0.894 5.234 1 17.43 ? C8 TES 1920 A 1 HETATM 10 C C9 TES . . . C 3 27.89 2.261 5.119 1 17.34 ? C9 TES 1920 A 1 HETATM 11 C C10 TES . . . C 3 27.176 3.48 5.771 1 18.65 ? C10 TES 1920 A 1 HETATM 12 C C11 TES . . . C 3 29.377 2.223 5.513 1 15.78 ? C11 TES 1920 A 1 HETATM 13 C C12 TES . . . C 3 30.174 1.018 4.929 1 21.01 ? C12 TES 1920 A 1 HETATM 14 C C13 TES . . . C 3 29.369 -0.288 5.028 1 19.62 ? C13 TES 1920 A 1 HETATM 15 C C14 TES . . . C 3 28.011 -0.113 4.424 1 19.44 ? C14 TES 1920 A 1 HETATM 16 C C15 TES . . . C 3 27.487 -1.552 4.172 1 23.42 ? C15 TES 1920 A 1 HETATM 17 C C16 TES . . . C 3 28.738 -2.4 3.933 1 23.02 ? C16 TES 1920 A 1 HETATM 18 C C17 TES . . . C 3 29.859 -1.399 4.112 1 21.04 ? C17 TES 1920 A 1 HETATM 19 O O17 TES . . . C 3 31.05 -1.986 4.576 1 24.24 ? O17 TES 1920 A 1 HETATM 20 C C18 TES . . . C 3 29.216 -0.659 6.52 1 21.29 ? C18 TES 1920 A 1 HETATM 21 C C19 TES . . . C 3 27.406 3.511 7.303 1 18.53 ? C19 TES 1920 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #