data_2YIO
#
_model_server_result.job_id            hE2TwdNYFLPf84tOPB1nxA 
_model_server_result.datetime_utc      '2024-10-20 08:22:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yio 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1139}' 
#
_entry.id    2YIO 
#
_exptl.entry_id    2YIO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YIO 
_cell.length_a            74.73 
_cell.length_b            81.99 
_cell.length_c            130.96 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YIO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,R 1 1,2 
B,L,M,N,O,P,Q,S 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 81.99 130.96 
3 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 74.73 0 65.48 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 78 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 A SG CYS 34 A CYS 34 1_555 A SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 A SG CYS 38 A CYS 38 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf4 A SG CYS 82 A CYS 82 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 107 A CYS 107 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf6 A SG CYS 111 A CYS 111 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf7 B SG CYS 9 B CYS 9 1_555 B SG CYS 78 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf8 B SG CYS 34 B CYS 34 1_555 B SG CYS 56 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
disulf ? disulf9 B SG CYS 38 B CYS 38 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf10 B SG CYS 82 B CYS 82 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf11 B SG CYS 107 B CYS 107 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf12 B SG CYS 111 B CYS 111 1_555 B SG CYS 117 B CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 303 n n 
S O2 SO4 doub 304 n n 
S O3 SO4 sing 305 n n 
S O4 SO4 sing 306 n n 
#
_atom_sites.entry_id                     2YIO 
_atom_sites.fract_transf_matrix[1][1]    0.013382 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 1133 1133 CL CL . 
D 2 CL A 1 1134 1134 CL CL . 
E 2 CL A 1 1135 1135 CL CL . 
F 2 CL A 1 1136 1136 CL CL . 
G 2 CL A 1 1137 1137 CL CL . 
H 3 SO4 A 1 1138 1138 SO4 SO4 . 
I 3 SO4 A 1 1139 1139 SO4 SO4 . 
J 4 GOL A 1 1140 1140 GOL GOL . 
K 5 YIO A 1 1141 1141 YIO YIO . 
L 2 CL B 1 1133 1133 CL CL . 
M 2 CL B 1 1134 1134 CL CL . 
N 2 CL B 1 1135 1135 CL CL . 
O 2 CL B 1 1136 1136 CL CL . 
P 4 GOL B 1 1137 1137 GOL GOL . 
Q 5 YIO B 1 1138 1138 YIO YIO . 
R 6 HOH A 1 2001 2001 HOH HOH . 
R 6 HOH A 2 2002 2002 HOH HOH . 
R 6 HOH A 3 2003 2003 HOH HOH . 
R 6 HOH A 4 2004 2004 HOH HOH . 
R 6 HOH A 5 2005 2005 HOH HOH . 
R 6 HOH A 6 2006 2006 HOH HOH . 
R 6 HOH A 7 2007 2007 HOH HOH . 
R 6 HOH A 8 2008 2008 HOH HOH . 
R 6 HOH A 9 2009 2009 HOH HOH . 
R 6 HOH A 10 2010 2010 HOH HOH . 
R 6 HOH A 11 2011 2011 HOH HOH . 
R 6 HOH A 12 2012 2012 HOH HOH . 
R 6 HOH A 13 2013 2013 HOH HOH . 
R 6 HOH A 14 2014 2014 HOH HOH . 
R 6 HOH A 15 2015 2015 HOH HOH . 
R 6 HOH A 16 2016 2016 HOH HOH . 
R 6 HOH A 17 2017 2017 HOH HOH . 
R 6 HOH A 18 2018 2018 HOH HOH . 
R 6 HOH A 19 2019 2019 HOH HOH . 
R 6 HOH A 20 2020 2020 HOH HOH . 
R 6 HOH A 21 2021 2021 HOH HOH . 
R 6 HOH A 22 2022 2022 HOH HOH . 
R 6 HOH A 23 2023 2023 HOH HOH . 
R 6 HOH A 24 2024 2024 HOH HOH . 
R 6 HOH A 25 2025 2025 HOH HOH . 
R 6 HOH A 26 2026 2026 HOH HOH . 
R 6 HOH A 27 2027 2027 HOH HOH . 
R 6 HOH A 28 2028 2028 HOH HOH . 
R 6 HOH A 29 2029 2029 HOH HOH . 
R 6 HOH A 30 2030 2030 HOH HOH . 
R 6 HOH A 31 2031 2031 HOH HOH . 
R 6 HOH A 32 2032 2032 HOH HOH . 
R 6 HOH A 33 2033 2033 HOH HOH . 
R 6 HOH A 34 2034 2034 HOH HOH . 
R 6 HOH A 35 2035 2035 HOH HOH . 
R 6 HOH A 36 2036 2036 HOH HOH . 
R 6 HOH A 37 2037 2037 HOH HOH . 
R 6 HOH A 38 2038 2038 HOH HOH . 
R 6 HOH A 39 2039 2039 HOH HOH . 
R 6 HOH A 40 2040 2040 HOH HOH . 
R 6 HOH A 41 2041 2041 HOH HOH . 
R 6 HOH A 42 2042 2042 HOH HOH . 
R 6 HOH A 43 2043 2043 HOH HOH . 
R 6 HOH A 44 2044 2044 HOH HOH . 
R 6 HOH A 45 2045 2045 HOH HOH . 
R 6 HOH A 46 2046 2046 HOH HOH . 
R 6 HOH A 47 2047 2047 HOH HOH . 
R 6 HOH A 48 2048 2048 HOH HOH . 
R 6 HOH A 49 2049 2049 HOH HOH . 
R 6 HOH A 50 2050 2050 HOH HOH . 
R 6 HOH A 51 2051 2051 HOH HOH . 
R 6 HOH A 52 2052 2052 HOH HOH . 
R 6 HOH A 53 2053 2053 HOH HOH . 
R 6 HOH A 54 2054 2054 HOH HOH . 
S 6 HOH B 1 2001 2001 HOH HOH . 
S 6 HOH B 2 2002 2002 HOH HOH . 
S 6 HOH B 3 2003 2003 HOH HOH . 
S 6 HOH B 4 2004 2004 HOH HOH . 
S 6 HOH B 5 2005 2005 HOH HOH . 
S 6 HOH B 6 2006 2006 HOH HOH . 
S 6 HOH B 7 2007 2007 HOH HOH . 
S 6 HOH B 8 2008 2008 HOH HOH . 
S 6 HOH B 9 2009 2009 HOH HOH . 
S 6 HOH B 10 2010 2010 HOH HOH . 
S 6 HOH B 11 2011 2011 HOH HOH . 
S 6 HOH B 12 2012 2012 HOH HOH . 
S 6 HOH B 13 2013 2013 HOH HOH . 
S 6 HOH B 14 2014 2014 HOH HOH . 
S 6 HOH B 15 2015 2015 HOH HOH . 
S 6 HOH B 16 2016 2016 HOH HOH . 
S 6 HOH B 17 2017 2017 HOH HOH . 
S 6 HOH B 18 2018 2018 HOH HOH . 
S 6 HOH B 19 2019 2019 HOH HOH . 
S 6 HOH B 20 2020 2020 HOH HOH . 
S 6 HOH B 21 2021 2021 HOH HOH . 
S 6 HOH B 22 2022 2022 HOH HOH . 
S 6 HOH B 23 2023 2023 HOH HOH . 
S 6 HOH B 24 2024 2024 HOH HOH . 
S 6 HOH B 25 2025 2025 HOH HOH . 
S 6 HOH B 26 2026 2026 HOH HOH . 
S 6 HOH B 27 2027 2027 HOH HOH . 
S 6 HOH B 28 2028 2028 HOH HOH . 
S 6 HOH B 29 2029 2029 HOH HOH . 
S 6 HOH B 30 2030 2030 HOH HOH . 
S 6 HOH B 31 2031 2031 HOH HOH . 
S 6 HOH B 32 2032 2032 HOH HOH . 
S 6 HOH B 33 2033 2033 HOH HOH . 
S 6 HOH B 34 2034 2034 HOH HOH . 
S 6 HOH B 35 2035 2035 HOH HOH . 
S 6 HOH B 36 2036 2036 HOH HOH . 
S 6 HOH B 37 2037 2037 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . I 3 50.637 6.165 40.56 0.8 71.39 ? S SO4 1139 A 1 
HETATM 2 O O1 SO4 . . . I 3 51.075 4.741 40.638 0.8 51.32 ? O1 SO4 1139 A 1 
HETATM 3 O O2 SO4 . . . I 3 50.522 6.542 41.97 0.8 64.43 ? O2 SO4 1139 A 1 
HETATM 4 O O3 SO4 . . . I 3 49.304 6.326 39.952 0.8 56.98 ? O3 SO4 1139 A 1 
HETATM 5 O O4 SO4 . . . I 3 51.596 7.082 39.853 0.8 55.05 ? O4 SO4 1139 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#