data_2YIT # _model_server_result.job_id eGPRcqF3RwELWoNPYnkXgw _model_server_result.datetime_utc '2024-12-21 18:51:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 2YIT # _exptl.entry_id 2YIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.454 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(1E)-N-carbamimidoylbutanehydrazonoyl]phenyl}-5-methoxy-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2YIT _cell.length_a 91.208 _cell.length_b 91.208 _cell.length_c 93.465 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -62.31 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 N6 O2' _chem_comp.formula_weight 392.454 _chem_comp.id YIT _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(1E)-N-carbamimidoylbutanehydrazonoyl]phenyl}-5-methoxy-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAI YIT sing 379 n y NAA CAM YIT sing 380 n y CAI CAH YIT sing 381 n y CAI CAJ YIT doub 382 n y CAH CAG YIT doub 383 n y CAG CAL YIT sing 384 n y CAL OBB YIT sing 385 n n CAL CAK YIT doub 386 n y OBB CAO YIT sing 387 n n CAK CAJ YIT sing 388 n y CAJ CAN YIT sing 389 n y CAN CAM YIT doub 390 n y CAM CAP YIT sing 391 n n CAP OBC YIT doub 392 n n CAP NAB YIT sing 393 n n NAB CAQ YIT sing 394 n n CAQ CAV YIT sing 395 n y CAQ CAR YIT doub 396 n y CAV CAU YIT doub 397 n y CAU CAT YIT sing 398 n y CAR CAS YIT sing 399 n y CAS CAT YIT doub 400 n y CAT CAW YIT sing 401 n n CAW CAX YIT sing 402 n n CAW NAC YIT doub 403 n n CAX CAZ YIT sing 404 n n CAZ CBA YIT sing 405 n n NAC NAD YIT sing 406 n n NAD CAY YIT sing 407 n n CAY NAF YIT doub 408 n n CAY NAE YIT sing 409 n n NAA HAA YIT sing 410 n n CAH HAH YIT sing 411 n n CAG HAG YIT sing 412 n n CAK HAK YIT sing 413 n n CAO HAO1 YIT sing 414 n n CAO HAO2 YIT sing 415 n n CAO HAO3 YIT sing 416 e n CAN HAN YIT sing 417 n n NAB HAB YIT sing 418 n n CAV HAV YIT sing 419 n n CAR HAR YIT sing 420 n n CAU HAU YIT sing 421 n n CAS HAS YIT sing 422 n n CAX HAX1 YIT sing 423 n n CAX HAX2 YIT sing 424 n n CAZ HAZ1 YIT sing 425 n n CAZ HAZ2 YIT sing 426 n n CBA HBA1 YIT sing 427 n n CBA HBA2 YIT sing 428 n n CBA HBA3 YIT sing 429 n n NAD HAD YIT sing 430 n n NAE HAE1 YIT sing 431 n n NAE HAE2 YIT sing 432 n n NAF HAF YIT sing 433 n n # _atom_sites.entry_id 2YIT _atom_sites.fract_transf_matrix[1][1] 0.010964 _atom_sites.fract_transf_matrix[1][2] 0.00633 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YIT A 1 600 600 YIT YIT . C 3 NO3 A 1 601 601 NO3 NO3 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA YIT . . . B 2 46.985 -16.906 -7.715 1 44.36 ? NAA YIT 600 A 1 HETATM 2 C CAI YIT . . . B 2 47.002 -17.679 -6.634 1 44.47 ? CAI YIT 600 A 1 HETATM 3 C CAH YIT . . . B 2 46.408 -18.901 -6.373 1 45.03 ? CAH YIT 600 A 1 HETATM 4 C CAG YIT . . . B 2 46.596 -19.517 -5.139 1 46.37 ? CAG YIT 600 A 1 HETATM 5 C CAL YIT . . . B 2 47.384 -18.932 -4.156 1 46.89 ? CAL YIT 600 A 1 HETATM 6 O OBB YIT . . . B 2 47.512 -19.642 -2.981 1 48.75 ? OBB YIT 600 A 1 HETATM 7 C CAO YIT . . . B 2 48.112 -18.977 -1.838 1 47.62 ? CAO YIT 600 A 1 HETATM 8 C CAK YIT . . . B 2 48.001 -17.69 -4.415 1 46.1 ? CAK YIT 600 A 1 HETATM 9 C CAJ YIT . . . B 2 47.809 -17.064 -5.673 1 44.85 ? CAJ YIT 600 A 1 HETATM 10 C CAN YIT . . . B 2 48.245 -15.922 -6.227 1 42.01 ? CAN YIT 600 A 1 HETATM 11 C CAM YIT . . . B 2 47.733 -15.831 -7.465 1 41.41 ? CAM YIT 600 A 1 HETATM 12 C CAP YIT . . . B 2 48.011 -14.688 -8.471 1 38.88 ? CAP YIT 600 A 1 HETATM 13 O OBC YIT . . . B 2 48.849 -13.834 -8.203 1 38.42 ? OBC YIT 600 A 1 HETATM 14 N NAB YIT . . . B 2 47.386 -14.772 -9.662 1 39.94 ? NAB YIT 600 A 1 HETATM 15 C CAQ YIT . . . B 2 47.538 -13.947 -10.713 1 36.31 ? CAQ YIT 600 A 1 HETATM 16 C CAV YIT . . . B 2 46.659 -14.135 -11.781 1 36.75 ? CAV YIT 600 A 1 HETATM 17 C CAU YIT . . . B 2 46.743 -13.393 -12.947 1 34.58 ? CAU YIT 600 A 1 HETATM 18 C CAR YIT . . . B 2 48.524 -12.978 -10.829 1 36.82 ? CAR YIT 600 A 1 HETATM 19 C CAS YIT . . . B 2 48.613 -12.203 -12 1 37.38 ? CAS YIT 600 A 1 HETATM 20 C CAT YIT . . . B 2 47.716 -12.396 -13.069 1 37.84 ? CAT YIT 600 A 1 HETATM 21 C CAW YIT . . . B 2 47.795 -11.606 -14.231 1 36.38 ? CAW YIT 600 A 1 HETATM 22 C CAX YIT . . . B 2 48.353 -10.187 -14.214 1 37.12 ? CAX YIT 600 A 1 HETATM 23 C CAZ YIT . . . B 2 49.671 -10.09 -15.007 1 38.31 ? CAZ YIT 600 A 1 HETATM 24 C CBA YIT . . . B 2 50.201 -8.641 -14.986 1 39.21 ? CBA YIT 600 A 1 HETATM 25 N NAC YIT . . . B 2 47.348 -12.112 -15.394 1 37.02 ? NAC YIT 600 A 1 HETATM 26 N NAD YIT . . . B 2 47.372 -11.501 -16.49 1 37.66 ? NAD YIT 600 A 1 HETATM 27 C CAY YIT . . . B 2 46.945 -12.109 -17.619 1 35.64 ? CAY YIT 600 A 1 HETATM 28 N NAF YIT . . . B 2 46.964 -11.53 -18.811 1 35.66 ? NAF YIT 600 A 1 HETATM 29 N NAE YIT . . . B 2 46.513 -13.338 -17.586 1 34.05 ? NAE YIT 600 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #