data_2YIU # _model_server_result.job_id sY3x4z_8V5PlT11IkOzNWA _model_server_result.datetime_utc '2024-11-13 20:52:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":500}' # _entry.id 2YIU # _exptl.entry_id 2YIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.18 _cell.angle_gamma 90 _cell.entry_id 2YIU _cell.length_a 85.3 _cell.length_b 164.91 _cell.length_c 100.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 137 C CYS 137 1_555 C SG CYS 154 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 F SG CYS 137 F CYS 137 1_555 F SG CYS 154 F CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B SG CYS 58 B CYS 82 1_555 J CAB HEC . B HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale2 B SG CYS 61 B CYS 85 1_555 J CAC HEC . B HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.673 ? covale ? covale3 E SG CYS 58 E CYS 82 1_555 O CAB HEC . E HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale4 E SG CYS 61 E CYS 85 1_555 O CAC HEC . E HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.664 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 G FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc2 A NE2 HIS 111 A HIS 111 1_555 H FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 A NE2 HIS 198 A HIS 198 1_555 G FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc4 A NE2 HIS 212 A HIS 212 1_555 H FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 B NE2 HIS 62 B HIS 86 1_555 J FE HEC . B HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 B SD MET 186 B MET 210 1_555 J FE HEC . B HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 C SG CYS 132 C CYS 132 1_555 K FE2 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc8 C ND1 HIS 134 C HIS 134 1_555 K FE1 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc9 C SG CYS 152 C CYS 152 1_555 K FE2 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 C ND1 HIS 155 C HIS 155 1_555 K FE1 FES . C FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc11 D NE2 HIS 97 D HIS 97 1_555 L FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc12 D NE2 HIS 111 D HIS 111 1_555 M FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc13 D NE2 HIS 198 D HIS 198 1_555 L FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc14 D NE2 HIS 212 D HIS 212 1_555 M FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc15 E NE2 HIS 62 E HIS 86 1_555 O FE HEC . E HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc16 E SD MET 186 E MET 210 1_555 O FE HEC . E HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc17 F SG CYS 132 F CYS 132 1_555 P FE2 FES . F FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc18 F ND1 HIS 134 F HIS 134 1_555 P FE1 FES . F FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc19 F SG CYS 152 F CYS 152 1_555 P FE2 FES . F FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc20 F ND1 HIS 155 F HIS 155 1_555 P FE1 FES . F FES 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 2YIU _atom_sites.fract_transf_matrix[1][1] 0.011723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HEM A 1 500 500 HEM HEM . H 4 HEM A 1 501 501 HEM HEM . I 5 SMA A 1 502 502 SMA SMA . J 6 HEC B 1 500 500 HEC HEC . K 7 FES C 1 500 500 FES FES . L 4 HEM D 1 500 500 HEM HEM . M 4 HEM D 1 501 501 HEM HEM . N 5 SMA D 1 502 502 SMA SMA . O 6 HEC E 1 500 500 HEC HEC . P 7 FES F 1 500 500 FES FES . Q 8 HOH A 1 2001 2001 HOH HOH . Q 8 HOH A 2 2002 2002 HOH HOH . Q 8 HOH A 3 2003 2003 HOH HOH . R 8 HOH B 1 2001 2001 HOH HOH . S 8 HOH D 1 2001 2001 HOH HOH . T 8 HOH F 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . P 7 0.627 -32.591 -47.071 1 23 ? FE1 FES 500 F 1 HETATM 2 FE FE2 FES . . . P 7 0.318 -29.561 -47.339 1 16.32 ? FE2 FES 500 F 1 HETATM 3 S S1 FES . . . P 7 -0.332 -31.066 -45.894 1 20.39 ? S1 FES 500 F 1 HETATM 4 S S2 FES . . . P 7 1.205 -31.118 -48.591 1 22.68 ? S2 FES 500 F 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #