data_2YJA
#
_model_server_result.job_id            SWUyYZ_fMpHpn0h1-IZKyw 
_model_server_result.datetime_utc      '2024-11-25 07:33:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2yja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1550}' 
#
_entry.id    2YJA 
#
_exptl.entry_id    2YJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              272.382 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ESTRADIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YJA 
_cell.length_a            75.032 
_cell.length_b            110.407 
_cell.length_c            65.192 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 75.032 0 32.596 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N HIS 2 A HIS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale2 A C LYS 3 A LYS 2 1_555 A N MK8 4 A MK8 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale3 A C MK8 4 A MK8 3 1_555 A N LEU 5 A LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale4 A CE MK8 4 A MK8 3 1_555 A CE MK8 8 A MK8 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale5 A C GLN 7 A GLN 6 1_555 A N MK8 8 A MK8 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale6 A C MK8 8 A MK8 7 1_555 A N LEU 9 A LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
covale ? covale7 A C SER 12 A SER 11 1_555 A N NH2 13 A NH2 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
#
_chem_comp.formula           'C18 H24 O2' 
_chem_comp.formula_weight    272.382 
_chem_comp.id                EST 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ESTRADIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 EST doub 89 n y 
C1 C10 EST sing 90 n y 
C1 H1 EST sing 91 n n 
C2 C3 EST sing 92 n y 
C2 H2 EST sing 93 n n 
C3 O3 EST sing 94 n n 
C3 C4 EST doub 95 n y 
O3 HO3 EST sing 96 n n 
C4 C5 EST sing 97 n y 
C4 H4 EST sing 98 n n 
C5 C6 EST sing 99 n n 
C5 C10 EST doub 100 n y 
C6 C7 EST sing 101 n n 
C6 H61 EST sing 102 n n 
C6 H62 EST sing 103 n n 
C7 C8 EST sing 104 n n 
C7 H71 EST sing 105 n n 
C7 H72 EST sing 106 n n 
C8 C9 EST sing 107 n n 
C8 C14 EST sing 108 n n 
C8 H8 EST sing 109 n n 
C9 C10 EST sing 110 n n 
C9 C11 EST sing 111 n n 
C9 H9 EST sing 112 n n 
C11 C12 EST sing 113 n n 
C11 H111 EST sing 114 n n 
C11 H112 EST sing 115 n n 
C12 C13 EST sing 116 n n 
C12 H121 EST sing 117 n n 
C12 H122 EST sing 118 n n 
C13 C14 EST sing 119 n n 
C13 C17 EST sing 120 n n 
C13 C18 EST sing 121 n n 
C14 C15 EST sing 122 n n 
C14 H14 EST sing 123 n n 
C15 C16 EST sing 124 n n 
C15 H151 EST sing 125 n n 
C15 H152 EST sing 126 n n 
C16 C17 EST sing 127 n n 
C16 H161 EST sing 128 n n 
C16 H162 EST sing 129 n n 
C17 O17 EST sing 130 n n 
C17 H17 EST sing 131 n n 
O17 HO7 EST sing 132 n n 
C18 H181 EST sing 133 n n 
C18 H182 EST sing 134 n n 
C18 H183 EST sing 135 n n 
#
_atom_sites.entry_id                     2YJA 
_atom_sites.fract_transf_matrix[1][1]    0.013328 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009057 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EST B 1 1550 1550 EST EST . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH B 1 2001 2001 HOH HOH . 
E 4 HOH B 2 2002 2002 HOH HOH . 
E 4 HOH B 3 2003 2003 HOH HOH . 
E 4 HOH B 4 2004 2004 HOH HOH . 
E 4 HOH B 5 2005 2005 HOH HOH . 
E 4 HOH B 6 2006 2006 HOH HOH . 
E 4 HOH B 7 2007 2007 HOH HOH . 
E 4 HOH B 8 2008 2008 HOH HOH . 
E 4 HOH B 9 2009 2009 HOH HOH . 
E 4 HOH B 10 2010 2010 HOH HOH . 
E 4 HOH B 11 2011 2011 HOH HOH . 
E 4 HOH B 12 2012 2012 HOH HOH . 
E 4 HOH B 13 2013 2013 HOH HOH . 
E 4 HOH B 14 2014 2014 HOH HOH . 
E 4 HOH B 15 2015 2015 HOH HOH . 
E 4 HOH B 16 2016 2016 HOH HOH . 
E 4 HOH B 17 2017 2017 HOH HOH . 
E 4 HOH B 18 2018 2018 HOH HOH . 
E 4 HOH B 19 2019 2019 HOH HOH . 
E 4 HOH B 20 2020 2020 HOH HOH . 
E 4 HOH B 21 2021 2021 HOH HOH . 
E 4 HOH B 22 2022 2022 HOH HOH . 
E 4 HOH B 23 2023 2023 HOH HOH . 
E 4 HOH B 24 2024 2024 HOH HOH . 
E 4 HOH B 25 2025 2025 HOH HOH . 
E 4 HOH B 26 2026 2026 HOH HOH . 
E 4 HOH B 27 2027 2027 HOH HOH . 
E 4 HOH B 28 2028 2028 HOH HOH . 
E 4 HOH B 29 2029 2029 HOH HOH . 
E 4 HOH B 30 2030 2030 HOH HOH . 
E 4 HOH B 31 2031 2031 HOH HOH . 
E 4 HOH B 32 2032 2032 HOH HOH . 
E 4 HOH B 33 2033 2033 HOH HOH . 
E 4 HOH B 34 2034 2034 HOH HOH . 
E 4 HOH B 35 2035 2035 HOH HOH . 
E 4 HOH B 36 2036 2036 HOH HOH . 
E 4 HOH B 37 2037 2037 HOH HOH . 
E 4 HOH B 38 2038 2038 HOH HOH . 
E 4 HOH B 39 2039 2039 HOH HOH . 
E 4 HOH B 40 2040 2040 HOH HOH . 
E 4 HOH B 41 2041 2041 HOH HOH . 
E 4 HOH B 42 2042 2042 HOH HOH . 
E 4 HOH B 43 2043 2043 HOH HOH . 
E 4 HOH B 44 2044 2044 HOH HOH . 
E 4 HOH B 45 2045 2045 HOH HOH . 
E 4 HOH B 46 2046 2046 HOH HOH . 
E 4 HOH B 47 2047 2047 HOH HOH . 
E 4 HOH B 48 2048 2048 HOH HOH . 
E 4 HOH B 49 2049 2049 HOH HOH . 
E 4 HOH B 50 2050 2050 HOH HOH . 
E 4 HOH B 51 2051 2051 HOH HOH . 
E 4 HOH B 52 2052 2052 HOH HOH . 
E 4 HOH B 53 2053 2053 HOH HOH . 
E 4 HOH B 54 2054 2054 HOH HOH . 
E 4 HOH B 55 2055 2055 HOH HOH . 
E 4 HOH B 56 2056 2056 HOH HOH . 
E 4 HOH B 57 2057 2057 HOH HOH . 
E 4 HOH B 58 2058 2058 HOH HOH . 
E 4 HOH B 59 2059 2059 HOH HOH . 
E 4 HOH B 60 2060 2060 HOH HOH . 
E 4 HOH B 61 2061 2061 HOH HOH . 
E 4 HOH B 62 2062 2062 HOH HOH . 
E 4 HOH B 63 2063 2063 HOH HOH . 
E 4 HOH B 64 2064 2064 HOH HOH . 
E 4 HOH B 65 2065 2065 HOH HOH . 
E 4 HOH B 66 2066 2066 HOH HOH . 
E 4 HOH B 67 2067 2067 HOH HOH . 
E 4 HOH B 68 2068 2068 HOH HOH . 
E 4 HOH B 69 2069 2069 HOH HOH . 
E 4 HOH B 70 2070 2070 HOH HOH . 
E 4 HOH B 71 2071 2071 HOH HOH . 
E 4 HOH B 72 2072 2072 HOH HOH . 
E 4 HOH B 73 2073 2073 HOH HOH . 
E 4 HOH B 74 2074 2074 HOH HOH . 
E 4 HOH B 75 2075 2075 HOH HOH . 
E 4 HOH B 76 2076 2076 HOH HOH . 
E 4 HOH B 77 2077 2077 HOH HOH . 
E 4 HOH B 78 2078 2078 HOH HOH . 
E 4 HOH B 79 2079 2079 HOH HOH . 
E 4 HOH B 80 2080 2080 HOH HOH . 
E 4 HOH B 81 2081 2081 HOH HOH . 
E 4 HOH B 82 2082 2082 HOH HOH . 
E 4 HOH B 83 2083 2083 HOH HOH . 
E 4 HOH B 84 2084 2084 HOH HOH . 
E 4 HOH B 85 2085 2085 HOH HOH . 
E 4 HOH B 86 2086 2086 HOH HOH . 
E 4 HOH B 87 2087 2087 HOH HOH . 
E 4 HOH B 88 2088 2088 HOH HOH . 
E 4 HOH B 89 2089 2089 HOH HOH . 
E 4 HOH B 90 2090 2090 HOH HOH . 
E 4 HOH B 91 2091 2091 HOH HOH . 
E 4 HOH B 92 2092 2092 HOH HOH . 
E 4 HOH B 93 2093 2093 HOH HOH . 
E 4 HOH B 94 2094 2094 HOH HOH . 
E 4 HOH B 95 2095 2095 HOH HOH . 
E 4 HOH B 96 2096 2096 HOH HOH . 
E 4 HOH B 97 2097 2097 HOH HOH . 
E 4 HOH B 98 2098 2098 HOH HOH . 
E 4 HOH B 99 2099 2099 HOH HOH . 
E 4 HOH B 100 2100 2100 HOH HOH . 
E 4 HOH B 101 2101 2101 HOH HOH . 
E 4 HOH B 102 2102 2102 HOH HOH . 
E 4 HOH B 103 2103 2103 HOH HOH . 
E 4 HOH B 104 2104 2104 HOH HOH . 
E 4 HOH B 105 2105 2105 HOH HOH . 
E 4 HOH B 106 2106 2106 HOH HOH . 
E 4 HOH B 107 2107 2107 HOH HOH . 
E 4 HOH B 108 2108 2108 HOH HOH . 
E 4 HOH B 109 2109 2109 HOH HOH . 
E 4 HOH B 110 2110 2110 HOH HOH . 
E 4 HOH B 111 2111 2111 HOH HOH . 
E 4 HOH B 112 2112 2112 HOH HOH . 
E 4 HOH B 113 2113 2113 HOH HOH . 
E 4 HOH B 114 2114 2114 HOH HOH . 
E 4 HOH B 115 2115 2115 HOH HOH . 
E 4 HOH B 116 2116 2116 HOH HOH . 
E 4 HOH B 117 2117 2117 HOH HOH . 
E 4 HOH B 118 2118 2118 HOH HOH . 
E 4 HOH B 119 2119 2119 HOH HOH . 
E 4 HOH B 120 2120 2120 HOH HOH . 
E 4 HOH B 121 2121 2121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EST . . . C 3 21.666 12.011 8.127 1 19.08 ? C1 EST 1550 B 1 
HETATM 2 C C2 EST . . . C 3 21.228 13.217 7.446 1 18.72 ? C2 EST 1550 B 1 
HETATM 3 C C3 EST . . . C 3 21.668 14.523 7.935 1 19.93 ? C3 EST 1550 B 1 
HETATM 4 O O3 EST . . . C 3 21.278 15.708 7.282 1 20.42 ? O3 EST 1550 B 1 
HETATM 5 C C4 EST . . . C 3 22.507 14.616 9.066 1 18.37 ? C4 EST 1550 B 1 
HETATM 6 C C5 EST . . . C 3 22.908 13.458 9.771 1 20.64 ? C5 EST 1550 B 1 
HETATM 7 C C6 EST . . . C 3 23.768 13.669 11.025 1 20.35 ? C6 EST 1550 B 1 
HETATM 8 C C7 EST . . . C 3 24.166 12.396 11.814 1 21.56 ? C7 EST 1550 B 1 
HETATM 9 C C8 EST . . . C 3 24.282 11.118 10.949 1 20.94 ? C8 EST 1550 B 1 
HETATM 10 C C9 EST . . . C 3 22.994 10.847 10.056 1 21.22 ? C9 EST 1550 B 1 
HETATM 11 C C10 EST . . . C 3 22.508 12.1 9.294 1 19.21 ? C10 EST 1550 B 1 
HETATM 12 C C11 EST . . . C 3 23.418 9.659 9.106 1 21.28 ? C11 EST 1550 B 1 
HETATM 13 C C12 EST . . . C 3 23.786 8.372 9.915 1 20.75 ? C12 EST 1550 B 1 
HETATM 14 C C13 EST . . . C 3 24.861 8.653 10.976 1 19.36 ? C13 EST 1550 B 1 
HETATM 15 C C14 EST . . . C 3 24.439 9.871 11.889 1 18.79 ? C14 EST 1550 B 1 
HETATM 16 C C15 EST . . . C 3 25.537 9.887 12.965 1 20.29 ? C15 EST 1550 B 1 
HETATM 17 C C16 EST . . . C 3 25.854 8.364 13.184 1 20.45 ? C16 EST 1550 B 1 
HETATM 18 C C17 EST . . . C 3 25.026 7.606 12.097 1 19.8 ? C17 EST 1550 B 1 
HETATM 19 O O17 EST . . . C 3 25.832 6.487 11.749 1 22.67 ? O17 EST 1550 B 1 
HETATM 20 C C18 EST . . . C 3 26.239 8.952 10.248 1 14.9 ? C18 EST 1550 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#