data_2YJA # _model_server_result.job_id Lz2BtvX1aJtc1Djyq6uyKA _model_server_result.datetime_utc '2024-10-11 17:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2yja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1550}' # _entry.id 2YJA # _exptl.entry_id 2YJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.382 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ESTRADIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YJA _cell.length_a 75.032 _cell.length_b 110.407 _cell.length_c 65.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 75.032 0 32.596 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N HIS 2 A HIS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 A C LYS 3 A LYS 2 1_555 A N MK8 4 A MK8 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale3 A C MK8 4 A MK8 3 1_555 A N LEU 5 A LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale4 A CE MK8 4 A MK8 3 1_555 A CE MK8 8 A MK8 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale5 A C GLN 7 A GLN 6 1_555 A N MK8 8 A MK8 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale6 A C MK8 8 A MK8 7 1_555 A N LEU 9 A LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale7 A C SER 12 A SER 11 1_555 A N NH2 13 A NH2 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? # _chem_comp.formula 'C18 H24 O2' _chem_comp.formula_weight 272.382 _chem_comp.id EST _chem_comp.mon_nstd_flag . _chem_comp.name ESTRADIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2YJA _atom_sites.fract_transf_matrix[1][1] 0.013328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EST B 1 1550 1550 EST EST . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH B 1 2001 2001 HOH HOH . E 4 HOH B 2 2002 2002 HOH HOH . E 4 HOH B 3 2003 2003 HOH HOH . E 4 HOH B 4 2004 2004 HOH HOH . E 4 HOH B 5 2005 2005 HOH HOH . E 4 HOH B 6 2006 2006 HOH HOH . E 4 HOH B 7 2007 2007 HOH HOH . E 4 HOH B 8 2008 2008 HOH HOH . E 4 HOH B 9 2009 2009 HOH HOH . E 4 HOH B 10 2010 2010 HOH HOH . E 4 HOH B 11 2011 2011 HOH HOH . E 4 HOH B 12 2012 2012 HOH HOH . E 4 HOH B 13 2013 2013 HOH HOH . E 4 HOH B 14 2014 2014 HOH HOH . E 4 HOH B 15 2015 2015 HOH HOH . E 4 HOH B 16 2016 2016 HOH HOH . E 4 HOH B 17 2017 2017 HOH HOH . E 4 HOH B 18 2018 2018 HOH HOH . E 4 HOH B 19 2019 2019 HOH HOH . E 4 HOH B 20 2020 2020 HOH HOH . E 4 HOH B 21 2021 2021 HOH HOH . E 4 HOH B 22 2022 2022 HOH HOH . E 4 HOH B 23 2023 2023 HOH HOH . E 4 HOH B 24 2024 2024 HOH HOH . E 4 HOH B 25 2025 2025 HOH HOH . E 4 HOH B 26 2026 2026 HOH HOH . E 4 HOH B 27 2027 2027 HOH HOH . E 4 HOH B 28 2028 2028 HOH HOH . E 4 HOH B 29 2029 2029 HOH HOH . E 4 HOH B 30 2030 2030 HOH HOH . E 4 HOH B 31 2031 2031 HOH HOH . E 4 HOH B 32 2032 2032 HOH HOH . E 4 HOH B 33 2033 2033 HOH HOH . E 4 HOH B 34 2034 2034 HOH HOH . E 4 HOH B 35 2035 2035 HOH HOH . E 4 HOH B 36 2036 2036 HOH HOH . E 4 HOH B 37 2037 2037 HOH HOH . E 4 HOH B 38 2038 2038 HOH HOH . E 4 HOH B 39 2039 2039 HOH HOH . E 4 HOH B 40 2040 2040 HOH HOH . E 4 HOH B 41 2041 2041 HOH HOH . E 4 HOH B 42 2042 2042 HOH HOH . E 4 HOH B 43 2043 2043 HOH HOH . E 4 HOH B 44 2044 2044 HOH HOH . E 4 HOH B 45 2045 2045 HOH HOH . E 4 HOH B 46 2046 2046 HOH HOH . E 4 HOH B 47 2047 2047 HOH HOH . E 4 HOH B 48 2048 2048 HOH HOH . E 4 HOH B 49 2049 2049 HOH HOH . E 4 HOH B 50 2050 2050 HOH HOH . E 4 HOH B 51 2051 2051 HOH HOH . E 4 HOH B 52 2052 2052 HOH HOH . E 4 HOH B 53 2053 2053 HOH HOH . E 4 HOH B 54 2054 2054 HOH HOH . E 4 HOH B 55 2055 2055 HOH HOH . E 4 HOH B 56 2056 2056 HOH HOH . E 4 HOH B 57 2057 2057 HOH HOH . E 4 HOH B 58 2058 2058 HOH HOH . E 4 HOH B 59 2059 2059 HOH HOH . E 4 HOH B 60 2060 2060 HOH HOH . E 4 HOH B 61 2061 2061 HOH HOH . E 4 HOH B 62 2062 2062 HOH HOH . E 4 HOH B 63 2063 2063 HOH HOH . E 4 HOH B 64 2064 2064 HOH HOH . E 4 HOH B 65 2065 2065 HOH HOH . E 4 HOH B 66 2066 2066 HOH HOH . E 4 HOH B 67 2067 2067 HOH HOH . E 4 HOH B 68 2068 2068 HOH HOH . E 4 HOH B 69 2069 2069 HOH HOH . E 4 HOH B 70 2070 2070 HOH HOH . E 4 HOH B 71 2071 2071 HOH HOH . E 4 HOH B 72 2072 2072 HOH HOH . E 4 HOH B 73 2073 2073 HOH HOH . E 4 HOH B 74 2074 2074 HOH HOH . E 4 HOH B 75 2075 2075 HOH HOH . E 4 HOH B 76 2076 2076 HOH HOH . E 4 HOH B 77 2077 2077 HOH HOH . E 4 HOH B 78 2078 2078 HOH HOH . E 4 HOH B 79 2079 2079 HOH HOH . E 4 HOH B 80 2080 2080 HOH HOH . E 4 HOH B 81 2081 2081 HOH HOH . E 4 HOH B 82 2082 2082 HOH HOH . E 4 HOH B 83 2083 2083 HOH HOH . E 4 HOH B 84 2084 2084 HOH HOH . E 4 HOH B 85 2085 2085 HOH HOH . E 4 HOH B 86 2086 2086 HOH HOH . E 4 HOH B 87 2087 2087 HOH HOH . E 4 HOH B 88 2088 2088 HOH HOH . E 4 HOH B 89 2089 2089 HOH HOH . E 4 HOH B 90 2090 2090 HOH HOH . E 4 HOH B 91 2091 2091 HOH HOH . E 4 HOH B 92 2092 2092 HOH HOH . E 4 HOH B 93 2093 2093 HOH HOH . E 4 HOH B 94 2094 2094 HOH HOH . E 4 HOH B 95 2095 2095 HOH HOH . E 4 HOH B 96 2096 2096 HOH HOH . E 4 HOH B 97 2097 2097 HOH HOH . E 4 HOH B 98 2098 2098 HOH HOH . E 4 HOH B 99 2099 2099 HOH HOH . E 4 HOH B 100 2100 2100 HOH HOH . E 4 HOH B 101 2101 2101 HOH HOH . E 4 HOH B 102 2102 2102 HOH HOH . E 4 HOH B 103 2103 2103 HOH HOH . E 4 HOH B 104 2104 2104 HOH HOH . E 4 HOH B 105 2105 2105 HOH HOH . E 4 HOH B 106 2106 2106 HOH HOH . E 4 HOH B 107 2107 2107 HOH HOH . E 4 HOH B 108 2108 2108 HOH HOH . E 4 HOH B 109 2109 2109 HOH HOH . E 4 HOH B 110 2110 2110 HOH HOH . E 4 HOH B 111 2111 2111 HOH HOH . E 4 HOH B 112 2112 2112 HOH HOH . E 4 HOH B 113 2113 2113 HOH HOH . E 4 HOH B 114 2114 2114 HOH HOH . E 4 HOH B 115 2115 2115 HOH HOH . E 4 HOH B 116 2116 2116 HOH HOH . E 4 HOH B 117 2117 2117 HOH HOH . E 4 HOH B 118 2118 2118 HOH HOH . E 4 HOH B 119 2119 2119 HOH HOH . E 4 HOH B 120 2120 2120 HOH HOH . E 4 HOH B 121 2121 2121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EST . . . C 3 21.666 12.011 8.127 1 19.08 ? C1 EST 1550 B 1 HETATM 2 C C2 EST . . . C 3 21.228 13.217 7.446 1 18.72 ? C2 EST 1550 B 1 HETATM 3 C C3 EST . . . C 3 21.668 14.523 7.935 1 19.93 ? C3 EST 1550 B 1 HETATM 4 O O3 EST . . . C 3 21.278 15.708 7.282 1 20.42 ? O3 EST 1550 B 1 HETATM 5 C C4 EST . . . C 3 22.507 14.616 9.066 1 18.37 ? C4 EST 1550 B 1 HETATM 6 C C5 EST . . . C 3 22.908 13.458 9.771 1 20.64 ? C5 EST 1550 B 1 HETATM 7 C C6 EST . . . C 3 23.768 13.669 11.025 1 20.35 ? C6 EST 1550 B 1 HETATM 8 C C7 EST . . . C 3 24.166 12.396 11.814 1 21.56 ? C7 EST 1550 B 1 HETATM 9 C C8 EST . . . C 3 24.282 11.118 10.949 1 20.94 ? C8 EST 1550 B 1 HETATM 10 C C9 EST . . . C 3 22.994 10.847 10.056 1 21.22 ? C9 EST 1550 B 1 HETATM 11 C C10 EST . . . C 3 22.508 12.1 9.294 1 19.21 ? C10 EST 1550 B 1 HETATM 12 C C11 EST . . . C 3 23.418 9.659 9.106 1 21.28 ? C11 EST 1550 B 1 HETATM 13 C C12 EST . . . C 3 23.786 8.372 9.915 1 20.75 ? C12 EST 1550 B 1 HETATM 14 C C13 EST . . . C 3 24.861 8.653 10.976 1 19.36 ? C13 EST 1550 B 1 HETATM 15 C C14 EST . . . C 3 24.439 9.871 11.889 1 18.79 ? C14 EST 1550 B 1 HETATM 16 C C15 EST . . . C 3 25.537 9.887 12.965 1 20.29 ? C15 EST 1550 B 1 HETATM 17 C C16 EST . . . C 3 25.854 8.364 13.184 1 20.45 ? C16 EST 1550 B 1 HETATM 18 C C17 EST . . . C 3 25.026 7.606 12.097 1 19.8 ? C17 EST 1550 B 1 HETATM 19 O O17 EST . . . C 3 25.832 6.487 11.749 1 22.67 ? O17 EST 1550 B 1 HETATM 20 C C18 EST . . . C 3 26.239 8.952 10.248 1 14.9 ? C18 EST 1550 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #