data_2YLP
#
_model_server_result.job_id            u-NVC-3xsQpR0lSrzbZE1A 
_model_server_result.datetime_utc      '2024-10-12 19:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ylp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1922}' 
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_entry.id    2YLP 
#
_exptl.entry_id    2YLP 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              327.226 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[(2,4-DICHLOROPHENYL)METHYLSULFANYLMETHYL]BENZOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2YLP 
_cell.length_a            56.71 
_cell.length_b            66.48 
_cell.length_c            73.49 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YLP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C15 H12 Cl2 O2 S' 
_chem_comp.formula_weight    327.226 
_chem_comp.id                056 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[(2,4-DICHLOROPHENYL)METHYLSULFANYLMETHYL]BENZOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL2 C5 056 sing 1 n n 
C5 C6 056 doub 2 n y 
C5 C4 056 sing 3 n y 
C6 C1 056 sing 4 n y 
C1 CL1 056 sing 5 n n 
C1 C2 056 doub 6 n y 
C4 C3 056 doub 7 n y 
C3 C2 056 sing 8 n y 
C2 C7 056 sing 9 n n 
C7 S8 056 sing 10 n n 
S8 C9 056 sing 11 n n 
C9 C10 056 sing 12 n n 
C10 C15 056 doub 13 n y 
C10 C11 056 sing 14 n y 
C15 C14 056 sing 15 n y 
C14 C13 056 doub 16 n y 
C13 C12 056 sing 17 n y 
C12 C11 056 doub 18 n y 
C12 C16 056 sing 19 n n 
C16 O17 056 sing 20 n n 
C16 O18 056 doub 21 n n 
C6 H6 056 sing 22 n n 
C4 H4 056 sing 23 n n 
C3 H3 056 sing 24 n n 
C7 H71C 056 sing 25 n n 
C7 H72C 056 sing 26 n n 
C9 H91C 056 sing 27 n n 
C9 H92C 056 sing 28 n n 
C15 H15 056 sing 29 n n 
C11 H11 056 sing 30 n n 
C14 H14 056 sing 31 n n 
C13 H13 056 sing 32 n n 
O17 H17 056 sing 33 n n 
#
_atom_sites.entry_id                     2YLP 
_atom_sites.fract_transf_matrix[1][1]    0.017634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1920 1920 SO4 SO4 . 
C 3 TES A 1 1921 1921 TES TES . 
D 4 056 A 1 1922 1922 056 056 . 
E 4 056 A 1 1923 1923 056 056 . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
F 5 HOH A 7 2007 2007 HOH HOH . 
F 5 HOH A 8 2008 2008 HOH HOH . 
F 5 HOH A 9 2009 2009 HOH HOH . 
F 5 HOH A 10 2010 2010 HOH HOH . 
F 5 HOH A 11 2011 2011 HOH HOH . 
F 5 HOH A 12 2012 2012 HOH HOH . 
F 5 HOH A 13 2013 2013 HOH HOH . 
F 5 HOH A 14 2014 2014 HOH HOH . 
F 5 HOH A 15 2015 2015 HOH HOH . 
F 5 HOH A 16 2016 2016 HOH HOH . 
F 5 HOH A 17 2017 2017 HOH HOH . 
F 5 HOH A 18 2018 2018 HOH HOH . 
F 5 HOH A 19 2019 2019 HOH HOH . 
F 5 HOH A 20 2020 2020 HOH HOH . 
F 5 HOH A 21 2021 2021 HOH HOH . 
F 5 HOH A 22 2022 2022 HOH HOH . 
F 5 HOH A 23 2023 2023 HOH HOH . 
F 5 HOH A 24 2024 2024 HOH HOH . 
F 5 HOH A 25 2025 2025 HOH HOH . 
F 5 HOH A 26 2026 2026 HOH HOH . 
F 5 HOH A 27 2027 2027 HOH HOH . 
F 5 HOH A 28 2028 2028 HOH HOH . 
F 5 HOH A 29 2029 2029 HOH HOH . 
F 5 HOH A 30 2030 2030 HOH HOH . 
F 5 HOH A 31 2031 2031 HOH HOH . 
F 5 HOH A 32 2032 2032 HOH HOH . 
F 5 HOH A 33 2033 2033 HOH HOH . 
F 5 HOH A 34 2034 2034 HOH HOH . 
F 5 HOH A 35 2035 2035 HOH HOH . 
F 5 HOH A 36 2036 2036 HOH HOH . 
F 5 HOH A 37 2037 2037 HOH HOH . 
F 5 HOH A 38 2038 2038 HOH HOH . 
F 5 HOH A 39 2039 2039 HOH HOH . 
F 5 HOH A 40 2040 2040 HOH HOH . 
F 5 HOH A 41 2041 2041 HOH HOH . 
F 5 HOH A 42 2042 2042 HOH HOH . 
F 5 HOH A 43 2043 2043 HOH HOH . 
F 5 HOH A 44 2044 2044 HOH HOH . 
F 5 HOH A 45 2045 2045 HOH HOH . 
F 5 HOH A 46 2046 2046 HOH HOH . 
F 5 HOH A 47 2047 2047 HOH HOH . 
F 5 HOH A 48 2048 2048 HOH HOH . 
F 5 HOH A 49 2049 2049 HOH HOH . 
F 5 HOH A 50 2050 2050 HOH HOH . 
F 5 HOH A 51 2051 2051 HOH HOH . 
F 5 HOH A 52 2052 2052 HOH HOH . 
F 5 HOH A 53 2053 2053 HOH HOH . 
F 5 HOH A 54 2054 2054 HOH HOH . 
F 5 HOH A 55 2055 2055 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O17 056 . . . D 4 15.272 -17.517 -27.295 0.5 57.32 ? O17 056 1922 A 1 
HETATM 2 C C16 056 . . . D 4 16.33 -17.924 -27.808 0.5 58.08 ? C16 056 1922 A 1 
HETATM 3 O O18 056 . . . D 4 16.626 -19.137 -27.914 0.5 58.99 ? O18 056 1922 A 1 
HETATM 4 C C12 056 . . . D 4 17.252 -16.863 -28.285 0.5 57.9 ? C12 056 1922 A 1 
HETATM 5 C C11 056 . . . D 4 17.954 -16.946 -29.488 0.5 58.66 ? C11 056 1922 A 1 
HETATM 6 C C10 056 . . . D 4 18.789 -15.899 -29.843 0.5 59.11 ? C10 056 1922 A 1 
HETATM 7 C C15 056 . . . D 4 18.874 -14.805 -29.019 0.5 58.66 ? C15 056 1922 A 1 
HETATM 8 C C14 056 . . . D 4 18.17 -14.735 -27.834 0.5 57.77 ? C14 056 1922 A 1 
HETATM 9 C C13 056 . . . D 4 17.346 -15.765 -27.464 0.5 57.13 ? C13 056 1922 A 1 
HETATM 10 S S8 056 . . . D 4 19.474 -14.171 -31.655 0.5 65.18 ? S8 056 1922 A 1 
HETATM 11 C C6 056 . . . D 4 19.934 -12.245 -35.786 0.5 70.82 ? C6 056 1922 A 1 
HETATM 12 C C9 056 . . . D 4 19.599 -15.852 -31.114 0.5 61.58 ? C9 056 1922 A 1 
HETATM 13 C C1 056 . . . D 4 19.907 -13.051 -34.647 0.5 70.44 ? C1 056 1922 A 1 
HETATM 14 CL CL1 056 . . . D 4 18.643 -14.341 -34.558 0.5 71.44 ? CL1 056 1922 A 1 
HETATM 15 C C2 056 . . . D 4 20.911 -12.787 -33.558 0.5 69.41 ? C2 056 1922 A 1 
HETATM 16 C C7 056 . . . D 4 21.013 -13.578 -32.269 0.5 66.99 ? C7 056 1922 A 1 
HETATM 17 C C3 056 . . . D 4 21.835 -11.765 -33.738 0.5 69.49 ? C3 056 1922 A 1 
HETATM 18 C C4 056 . . . D 4 21.806 -11.004 -34.899 0.5 70.37 ? C4 056 1922 A 1 
HETATM 19 C C5 056 . . . D 4 20.875 -11.224 -35.916 0.5 71.27 ? C5 056 1922 A 1 
HETATM 20 CL CL2 056 . . . D 4 20.887 -10.186 -37.397 0.5 71.79 ? CL2 056 1922 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#