data_2YLQ # _model_server_result.job_id BQXlO6h1ZcaR87q7WV2TjA _model_server_result.datetime_utc '2024-11-24 09:07:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ylq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1922}' # _entry.id 2YLQ # _exptl.entry_id 2YLQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.439 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[1-[2-(4-METHYLPHENOXY)ETHYL]BENZIMIDAZOL-2-YL]SULFANYLPROPANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2YLQ _cell.length_a 56.16 _cell.length_b 66.47 _cell.length_c 73.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H20 N2 O3 S' _chem_comp.formula_weight 356.439 _chem_comp.id YLQ _chem_comp.mon_nstd_flag . _chem_comp.name '3-[1-[2-(4-METHYLPHENOXY)ETHYL]BENZIMIDAZOL-2-YL]SULFANYLPROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 YLQ sing 432 n n C02 C03 YLQ sing 433 n y C02 C25 YLQ doub 434 n y C03 C04 YLQ doub 435 n y C04 C05 YLQ sing 436 n y C05 O06 YLQ sing 437 n n C05 C24 YLQ doub 438 n y O06 C07 YLQ sing 439 n n C07 C08 YLQ sing 440 n n C08 N09 YLQ sing 441 n n N09 C10 YLQ sing 442 n y N09 C23 YLQ sing 443 n y C10 S11 YLQ sing 444 n n C10 N17 YLQ doub 445 n y S11 C12 YLQ sing 446 n n C12 C13 YLQ sing 447 n n C13 C14 YLQ sing 448 n n C14 O15 YLQ doub 449 n n C14 O16 YLQ sing 450 n n N17 C18 YLQ sing 451 n y C18 C19 YLQ doub 452 n y C18 C23 YLQ sing 453 n y C19 C20 YLQ sing 454 n y C20 C21 YLQ doub 455 n y C21 C22 YLQ sing 456 n y C22 C23 YLQ doub 457 n y C24 C25 YLQ sing 458 n y C01 H011 YLQ sing 459 n n C01 H012 YLQ sing 460 n n C01 H013 YLQ sing 461 n n C03 H03 YLQ sing 462 n n C25 H25 YLQ sing 463 n n C04 H04 YLQ sing 464 n n C24 H24 YLQ sing 465 n n C07 H071 YLQ sing 466 n n C07 H072 YLQ sing 467 n n C08 H081 YLQ sing 468 n n C08 H082 YLQ sing 469 n n C12 H121 YLQ sing 470 n n C12 H122 YLQ sing 471 n n C13 H131 YLQ sing 472 n n C13 H132 YLQ sing 473 n n O16 H16 YLQ sing 474 n n C19 H19 YLQ sing 475 n n C20 H20 YLQ sing 476 n n C21 H21 YLQ sing 477 n n C22 H22 YLQ sing 478 n n # _atom_sites.entry_id 2YLQ _atom_sites.fract_transf_matrix[1][1] 0.017806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1920 1920 SO4 SO4 . C 3 TES A 1 1921 1921 TES TES . D 4 YLQ A 1 1922 1922 YLQ YLQ . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 YLQ . . . D 4 11.598 -13.189 -33.529 1 20 ? C01 YLQ 1922 A 1 HETATM 2 C C02 YLQ . . . D 4 12.637 -14.255 -33.574 1 20 ? C02 YLQ 1922 A 1 HETATM 3 C C03 YLQ . . . D 4 12.46 -15.418 -32.883 1 20 ? C03 YLQ 1922 A 1 HETATM 4 C C04 YLQ . . . D 4 13.47 -16.447 -32.952 1 20 ? C04 YLQ 1922 A 1 HETATM 5 C C05 YLQ . . . D 4 14.646 -16.253 -33.715 1 20 ? C05 YLQ 1922 A 1 HETATM 6 O O06 YLQ . . . D 4 15.608 -17.214 -33.78 1 20 ? O06 YLQ 1922 A 1 HETATM 7 C C07 YLQ . . . D 4 16.126 -17.827 -32.648 1 20 ? C07 YLQ 1922 A 1 HETATM 8 C C08 YLQ . . . D 4 17.486 -17.399 -32.243 1 20 ? C08 YLQ 1922 A 1 HETATM 9 N N09 YLQ . . . D 4 17.723 -16.684 -30.954 1 20 ? N09 YLQ 1922 A 1 HETATM 10 C C10 YLQ . . . D 4 18.697 -15.768 -30.7 1 20 ? C10 YLQ 1922 A 1 HETATM 11 S S11 YLQ . . . D 4 19.834 -15.187 -31.881 1 20 ? S11 YLQ 1922 A 1 HETATM 12 C C12 YLQ . . . D 4 19.65 -13.383 -31.753 1 20 ? C12 YLQ 1922 A 1 HETATM 13 C C13 YLQ . . . D 4 20.136 -12.477 -32.813 1 20 ? C13 YLQ 1922 A 1 HETATM 14 C C14 YLQ . . . D 4 21.584 -12.15 -32.929 1 20 ? C14 YLQ 1922 A 1 HETATM 15 O O15 YLQ . . . D 4 22.426 -12.708 -32.207 1 20 ? O15 YLQ 1922 A 1 HETATM 16 O O16 YLQ . . . D 4 21.949 -11.293 -33.803 1 20 ? O16 YLQ 1922 A 1 HETATM 17 N N17 YLQ . . . D 4 18.644 -15.335 -29.434 1 20 ? N17 YLQ 1922 A 1 HETATM 18 C C18 YLQ . . . D 4 17.602 -15.989 -28.836 1 20 ? C18 YLQ 1922 A 1 HETATM 19 C C19 YLQ . . . D 4 17.102 -15.921 -27.521 1 20 ? C19 YLQ 1922 A 1 HETATM 20 C C20 YLQ . . . D 4 16.02 -16.72 -27.212 1 20 ? C20 YLQ 1922 A 1 HETATM 21 C C21 YLQ . . . D 4 15.447 -17.573 -28.137 1 20 ? C21 YLQ 1922 A 1 HETATM 22 C C22 YLQ . . . D 4 15.941 -17.651 -29.452 1 20 ? C22 YLQ 1922 A 1 HETATM 23 C C23 YLQ . . . D 4 17.026 -16.836 -29.778 1 20 ? C23 YLQ 1922 A 1 HETATM 24 C C24 YLQ . . . D 4 14.818 -15.055 -34.421 1 20 ? C24 YLQ 1922 A 1 HETATM 25 C C25 YLQ . . . D 4 13.835 -14.066 -34.357 1 20 ? C25 YLQ 1922 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #