data_2YM2
#
_model_server_result.job_id            oMd5Hd4vcxwsTHqf2MDq1g 
_model_server_result.datetime_utc      '2024-11-15 07:04:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ym2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":700}' 
#
_entry.id    2YM2 
#
_exptl.entry_id    2YM2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2YM2 
_cell.length_a            108.45 
_cell.length_b            108.45 
_cell.length_c            108.09 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2YM2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     2YM2 
_atom_sites.fract_transf_matrix[1][1]    0.009221 
_atom_sites.fract_transf_matrix[1][2]    0.005324 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010647 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009252 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 700 700 FAD FAD . 
C 3 NAP A 1 1543 1543 NAP NAP . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -36.244 26.851 19.13 1 25.61 ? PA FAD 700 A 1 
HETATM 2 O O1A FAD . . . B 2 -37.061 27.691 18.214 1 22.74 ? O1A FAD 700 A 1 
HETATM 3 O O2A FAD . . . B 2 -37.04 26.525 20.411 1 25.14 ? O2A FAD 700 A 1 
HETATM 4 O O5B FAD . . . B 2 -34.889 27.555 19.598 1 27.44 ? O5B FAD 700 A 1 
HETATM 5 C C5B FAD . . . B 2 -34.198 28.448 18.752 1 29.51 ? C5B FAD 700 A 1 
HETATM 6 C C4B FAD . . . B 2 -33.592 29.57 19.573 1 29.34 ? C4B FAD 700 A 1 
HETATM 7 O O4B FAD . . . B 2 -32.559 30.213 18.845 1 31.09 ? O4B FAD 700 A 1 
HETATM 8 C C3B FAD . . . B 2 -34.646 30.606 19.86 1 29.79 ? C3B FAD 700 A 1 
HETATM 9 O O3B FAD . . . B 2 -34.619 30.955 21.222 1 27.31 ? O3B FAD 700 A 1 
HETATM 10 C C2B FAD . . . B 2 -34.226 31.816 19.063 1 30.58 ? C2B FAD 700 A 1 
HETATM 11 O O2B FAD . . . B 2 -34.495 32.982 19.809 1 33.55 ? O2B FAD 700 A 1 
HETATM 12 C C1B FAD . . . B 2 -32.734 31.618 18.934 1 31.04 ? C1B FAD 700 A 1 
HETATM 13 N N9A FAD . . . B 2 -32.153 32.312 17.778 1 33.52 ? N9A FAD 700 A 1 
HETATM 14 C C8A FAD . . . B 2 -32.645 32.41 16.489 1 34.7 ? C8A FAD 700 A 1 
HETATM 15 N N7A FAD . . . B 2 -31.803 33.141 15.728 1 34.69 ? N7A FAD 700 A 1 
HETATM 16 C C5A FAD . . . B 2 -30.768 33.51 16.528 1 37.14 ? C5A FAD 700 A 1 
HETATM 17 C C6A FAD . . . B 2 -29.612 34.255 16.3 1 37.83 ? C6A FAD 700 A 1 
HETATM 18 N N6A FAD . . . B 2 -29.352 34.788 15.103 1 37.86 ? N6A FAD 700 A 1 
HETATM 19 N N1A FAD . . . B 2 -28.73 34.448 17.344 1 39.18 ? N1A FAD 700 A 1 
HETATM 20 C C2A FAD . . . B 2 -28.964 33.957 18.611 1 37.83 ? C2A FAD 700 A 1 
HETATM 21 N N3A FAD . . . B 2 -30.105 33.222 18.824 1 38.42 ? N3A FAD 700 A 1 
HETATM 22 C C4A FAD . . . B 2 -30.983 32.999 17.809 1 36.01 ? C4A FAD 700 A 1 
HETATM 23 N N1 FAD . . . B 2 -43.052 20.469 18.257 1 17.89 ? N1 FAD 700 A 1 
HETATM 24 C C2 FAD . . . B 2 -43.67 19.232 18.427 1 18.55 ? C2 FAD 700 A 1 
HETATM 25 O O2 FAD . . . B 2 -43.149 18.18 17.972 1 21.14 ? O2 FAD 700 A 1 
HETATM 26 N N3 FAD . . . B 2 -44.982 19.211 18.872 1 15.98 ? N3 FAD 700 A 1 
HETATM 27 C C4 FAD . . . B 2 -45.522 20.301 19.506 1 16.96 ? C4 FAD 700 A 1 
HETATM 28 O O4 FAD . . . B 2 -46.701 20.28 19.816 1 19.82 ? O4 FAD 700 A 1 
HETATM 29 C C4X FAD . . . B 2 -44.896 21.533 19.431 1 18.68 ? C4X FAD 700 A 1 
HETATM 30 N N5 FAD . . . B 2 -45.596 22.673 19.809 1 17.62 ? N5 FAD 700 A 1 
HETATM 31 C C5X FAD . . . B 2 -45.039 23.914 19.518 1 20.44 ? C5X FAD 700 A 1 
HETATM 32 C C6 FAD . . . B 2 -45.626 25.103 19.979 1 21.76 ? C6 FAD 700 A 1 
HETATM 33 C C7 FAD . . . B 2 -45.212 26.36 19.48 1 20.61 ? C7 FAD 700 A 1 
HETATM 34 C C7M FAD . . . B 2 -45.883 27.614 19.979 1 19.09 ? C7M FAD 700 A 1 
HETATM 35 C C8 FAD . . . B 2 -44.158 26.432 18.565 1 19.99 ? C8 FAD 700 A 1 
HETATM 36 C C8M FAD . . . B 2 -43.682 27.743 17.988 1 19.19 ? C8M FAD 700 A 1 
HETATM 37 C C9 FAD . . . B 2 -43.564 25.252 18.125 1 19.24 ? C9 FAD 700 A 1 
HETATM 38 C C9A FAD . . . B 2 -43.998 24.004 18.581 1 20.04 ? C9A FAD 700 A 1 
HETATM 39 N N10 FAD . . . B 2 -43.232 22.886 18.315 1 20.37 ? N10 FAD 700 A 1 
HETATM 40 C C10 FAD . . . B 2 -43.712 21.63 18.67 1 19.65 ? C10 FAD 700 A 1 
HETATM 41 C C1' FAD . . . B 2 -42.129 23.01 17.307 1 19.67 ? C1' FAD 700 A 1 
HETATM 42 C C2' FAD . . . B 2 -40.821 23.376 17.986 1 20.04 ? C2' FAD 700 A 1 
HETATM 43 O O2' FAD . . . B 2 -40.107 24.009 16.977 1 15.09 ? O2' FAD 700 A 1 
HETATM 44 C C3' FAD . . . B 2 -40.009 22.164 18.499 1 22.83 ? C3' FAD 700 A 1 
HETATM 45 O O3' FAD . . . B 2 -40.815 21.318 19.29 1 20.45 ? O3' FAD 700 A 1 
HETATM 46 C C4' FAD . . . B 2 -38.792 22.569 19.35 1 25.6 ? C4' FAD 700 A 1 
HETATM 47 O O4' FAD . . . B 2 -39.207 23.225 20.533 1 25.52 ? O4' FAD 700 A 1 
HETATM 48 C C5' FAD . . . B 2 -37.816 23.498 18.627 1 24.86 ? C5' FAD 700 A 1 
HETATM 49 O O5' FAD . . . B 2 -36.689 23.63 19.433 1 23.94 ? O5' FAD 700 A 1 
HETATM 50 P P FAD . . . B 2 -35.317 24.15 18.837 1 22.64 ? P FAD 700 A 1 
HETATM 51 O O1P FAD . . . B 2 -34.295 24.244 19.889 1 21.29 ? O1P FAD 700 A 1 
HETATM 52 O O2P FAD . . . B 2 -34.904 23.187 17.739 1 22.56 ? O2P FAD 700 A 1 
HETATM 53 O O3P FAD . . . B 2 -35.709 25.594 18.267 1 24.94 ? O3P FAD 700 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           53 
#