data_2YM3 # _model_server_result.job_id pZne0gthP92kNYEYLUiJZQ _model_server_result.datetime_utc '2024-12-21 15:01:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ym3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1271}' # _entry.id 2YM3 # _exptl.entry_id 2YM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.332 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ETHYL 4-(2-(AMINOMETHYL)MORPHOLINO)-1H-PYRAZOLO[3,4-B]PYRIDINE-5-CARBOXYLATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.25 _cell.angle_gamma 90 _cell.entry_id 2YM3 _cell.length_a 45.05 _cell.length_b 65.79 _cell.length_c 58.14 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H19 N5 O3' _chem_comp.formula_weight 305.332 _chem_comp.id YM3 _chem_comp.mon_nstd_flag . _chem_comp.name 'ETHYL 4-(2-(AMINOMETHYL)MORPHOLINO)-1H-PYRAZOLO[3,4-B]PYRIDINE-5-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CAB YM3 sing 385 n n CAB O03 YM3 sing 386 n n CAQ CAR YM3 sing 387 n n CAQ O03 YM3 sing 388 n n CAQ O05 YM3 doub 389 n n CAR CAG YM3 sing 390 n y CAR CAS YM3 doub 391 n y CAG NAN YM3 doub 392 n y NAN CAU YM3 sing 393 n y CAU NAO YM3 sing 394 n y CAU CAT YM3 doub 395 n y NAO NAM YM3 sing 396 n y NAM CAH YM3 doub 397 n y CAH CAT YM3 sing 398 n y CAT CAS YM3 sing 399 n y CAS NAV YM3 sing 400 n n NAV CAL YM3 sing 401 n n NAV CAK YM3 sing 402 n n CAL CAW YM3 sing 403 n n CAK CAJ YM3 sing 404 n n CAJ OAP YM3 sing 405 n n OAP CAW YM3 sing 406 n n CAW CAI YM3 sing 407 n n CAI NAA YM3 sing 408 n n CAC HAC1 YM3 sing 409 n n CAC HAC2 YM3 sing 410 n n CAC HAC3 YM3 sing 411 n n CAB HAB1 YM3 sing 412 n n CAB HAB2 YM3 sing 413 n n CAG HAG YM3 sing 414 n n NAO HAO YM3 sing 415 n n CAH HAH YM3 sing 416 n n CAL HAL1 YM3 sing 417 n n CAL HAL2 YM3 sing 418 n n CAK HAK1 YM3 sing 419 n n CAK HAK2 YM3 sing 420 n n CAW HAW YM3 sing 421 n n CAJ HAJ1 YM3 sing 422 n n CAJ HAJ2 YM3 sing 423 n n CAI HAI1 YM3 sing 424 n n CAI HAI2 YM3 sing 425 n n NAA HAA1 YM3 sing 426 n n NAA HAA2 YM3 sing 427 n n # _atom_sites.entry_id 2YM3 _atom_sites.fract_transf_matrix[1][1] 0.022198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00165 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YM3 A 1 1271 1271 YM3 YM3 . C 3 EDO A 1 1272 1272 EDO EDO . D 3 EDO A 1 1273 1273 EDO EDO . E 3 EDO A 1 1274 1274 EDO EDO . F 3 EDO A 1 1275 1275 EDO EDO . G 3 EDO A 1 1276 1276 EDO EDO . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH A 34 2034 2034 HOH HOH . H 4 HOH A 35 2035 2035 HOH HOH . H 4 HOH A 36 2036 2036 HOH HOH . H 4 HOH A 37 2037 2037 HOH HOH . H 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH A 39 2039 2039 HOH HOH . H 4 HOH A 40 2040 2040 HOH HOH . H 4 HOH A 41 2041 2041 HOH HOH . H 4 HOH A 42 2042 2042 HOH HOH . H 4 HOH A 43 2043 2043 HOH HOH . H 4 HOH A 44 2044 2044 HOH HOH . H 4 HOH A 45 2045 2045 HOH HOH . H 4 HOH A 46 2046 2046 HOH HOH . H 4 HOH A 47 2047 2047 HOH HOH . H 4 HOH A 48 2048 2048 HOH HOH . H 4 HOH A 49 2049 2049 HOH HOH . H 4 HOH A 50 2050 2050 HOH HOH . H 4 HOH A 51 2051 2051 HOH HOH . H 4 HOH A 52 2052 2052 HOH HOH . H 4 HOH A 53 2053 2053 HOH HOH . H 4 HOH A 54 2054 2054 HOH HOH . H 4 HOH A 55 2055 2055 HOH HOH . H 4 HOH A 56 2056 2056 HOH HOH . H 4 HOH A 57 2057 2057 HOH HOH . H 4 HOH A 58 2058 2058 HOH HOH . H 4 HOH A 59 2059 2059 HOH HOH . H 4 HOH A 60 2060 2060 HOH HOH . H 4 HOH A 61 2061 2061 HOH HOH . H 4 HOH A 62 2062 2062 HOH HOH . H 4 HOH A 63 2063 2063 HOH HOH . H 4 HOH A 64 2064 2064 HOH HOH . H 4 HOH A 65 2065 2065 HOH HOH . H 4 HOH A 66 2066 2066 HOH HOH . H 4 HOH A 67 2067 2067 HOH HOH . H 4 HOH A 68 2068 2068 HOH HOH . H 4 HOH A 69 2069 2069 HOH HOH . H 4 HOH A 70 2070 2070 HOH HOH . H 4 HOH A 71 2071 2071 HOH HOH . H 4 HOH A 72 2072 2072 HOH HOH . H 4 HOH A 73 2073 2073 HOH HOH . H 4 HOH A 74 2074 2074 HOH HOH . H 4 HOH A 75 2075 2075 HOH HOH . H 4 HOH A 76 2076 2076 HOH HOH . H 4 HOH A 77 2077 2077 HOH HOH . H 4 HOH A 78 2078 2078 HOH HOH . H 4 HOH A 79 2079 2079 HOH HOH . H 4 HOH A 80 2080 2080 HOH HOH . H 4 HOH A 81 2081 2081 HOH HOH . H 4 HOH A 82 2082 2082 HOH HOH . H 4 HOH A 83 2083 2083 HOH HOH . H 4 HOH A 84 2084 2084 HOH HOH . H 4 HOH A 85 2085 2085 HOH HOH . H 4 HOH A 86 2086 2086 HOH HOH . H 4 HOH A 87 2087 2087 HOH HOH . H 4 HOH A 88 2088 2088 HOH HOH . H 4 HOH A 89 2089 2089 HOH HOH . H 4 HOH A 90 2090 2090 HOH HOH . H 4 HOH A 91 2091 2091 HOH HOH . H 4 HOH A 92 2092 2092 HOH HOH . H 4 HOH A 93 2093 2093 HOH HOH . H 4 HOH A 94 2094 2094 HOH HOH . H 4 HOH A 95 2095 2095 HOH HOH . H 4 HOH A 96 2096 2096 HOH HOH . H 4 HOH A 97 2097 2097 HOH HOH . H 4 HOH A 98 2098 2098 HOH HOH . H 4 HOH A 99 2099 2099 HOH HOH . H 4 HOH A 100 2100 2100 HOH HOH . H 4 HOH A 101 2101 2101 HOH HOH . H 4 HOH A 102 2102 2102 HOH HOH . H 4 HOH A 103 2103 2103 HOH HOH . H 4 HOH A 104 2104 2104 HOH HOH . H 4 HOH A 105 2105 2105 HOH HOH . H 4 HOH A 106 2106 2106 HOH HOH . H 4 HOH A 107 2107 2107 HOH HOH . H 4 HOH A 108 2108 2108 HOH HOH . H 4 HOH A 109 2109 2109 HOH HOH . H 4 HOH A 110 2110 2110 HOH HOH . H 4 HOH A 111 2111 2111 HOH HOH . H 4 HOH A 112 2112 2112 HOH HOH . H 4 HOH A 113 2113 2113 HOH HOH . H 4 HOH A 114 2114 2114 HOH HOH . H 4 HOH A 115 2115 2115 HOH HOH . H 4 HOH A 116 2116 2116 HOH HOH . H 4 HOH A 117 2117 2117 HOH HOH . H 4 HOH A 118 2118 2118 HOH HOH . H 4 HOH A 119 2119 2119 HOH HOH . H 4 HOH A 120 2120 2120 HOH HOH . H 4 HOH A 121 2121 2121 HOH HOH . H 4 HOH A 122 2122 2122 HOH HOH . H 4 HOH A 123 2123 2123 HOH HOH . H 4 HOH A 124 2124 2124 HOH HOH . H 4 HOH A 125 2125 2125 HOH HOH . H 4 HOH A 126 2126 2126 HOH HOH . H 4 HOH A 127 2127 2127 HOH HOH . H 4 HOH A 128 2128 2128 HOH HOH . H 4 HOH A 129 2129 2129 HOH HOH . H 4 HOH A 130 2130 2130 HOH HOH . H 4 HOH A 131 2131 2131 HOH HOH . H 4 HOH A 132 2132 2132 HOH HOH . H 4 HOH A 133 2133 2133 HOH HOH . H 4 HOH A 134 2134 2134 HOH HOH . H 4 HOH A 135 2135 2135 HOH HOH . H 4 HOH A 136 2136 2136 HOH HOH . H 4 HOH A 137 2137 2137 HOH HOH . H 4 HOH A 138 2138 2138 HOH HOH . H 4 HOH A 139 2139 2139 HOH HOH . H 4 HOH A 140 2140 2140 HOH HOH . H 4 HOH A 141 2141 2141 HOH HOH . H 4 HOH A 142 2142 2142 HOH HOH . H 4 HOH A 143 2143 2143 HOH HOH . H 4 HOH A 144 2144 2144 HOH HOH . H 4 HOH A 145 2145 2145 HOH HOH . H 4 HOH A 146 2146 2146 HOH HOH . H 4 HOH A 147 2147 2147 HOH HOH . H 4 HOH A 148 2148 2148 HOH HOH . H 4 HOH A 149 2149 2149 HOH HOH . H 4 HOH A 150 2150 2150 HOH HOH . H 4 HOH A 151 2151 2151 HOH HOH . H 4 HOH A 152 2152 2152 HOH HOH . H 4 HOH A 153 2153 2153 HOH HOH . H 4 HOH A 154 2154 2154 HOH HOH . H 4 HOH A 155 2155 2155 HOH HOH . H 4 HOH A 156 2156 2156 HOH HOH . H 4 HOH A 157 2157 2157 HOH HOH . H 4 HOH A 158 2158 2158 HOH HOH . H 4 HOH A 159 2159 2159 HOH HOH . H 4 HOH A 160 2160 2160 HOH HOH . H 4 HOH A 161 2161 2161 HOH HOH . H 4 HOH A 162 2162 2162 HOH HOH . H 4 HOH A 163 2163 2163 HOH HOH . H 4 HOH A 164 2164 2164 HOH HOH . H 4 HOH A 165 2165 2165 HOH HOH . H 4 HOH A 166 2166 2166 HOH HOH . H 4 HOH A 167 2167 2167 HOH HOH . H 4 HOH A 168 2168 2168 HOH HOH . H 4 HOH A 169 2169 2169 HOH HOH . H 4 HOH A 170 2170 2170 HOH HOH . H 4 HOH A 171 2171 2171 HOH HOH . H 4 HOH A 172 2172 2172 HOH HOH . H 4 HOH A 173 2173 2173 HOH HOH . H 4 HOH A 174 2174 2174 HOH HOH . H 4 HOH A 175 2175 2175 HOH HOH . H 4 HOH A 176 2176 2176 HOH HOH . H 4 HOH A 177 2177 2177 HOH HOH . H 4 HOH A 178 2178 2178 HOH HOH . H 4 HOH A 179 2179 2179 HOH HOH . H 4 HOH A 180 2180 2180 HOH HOH . H 4 HOH A 181 2181 2181 HOH HOH . H 4 HOH A 182 2182 2182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC YM3 . . . B 2 22.225 0.542 7.612 1 42.19 ? CAC YM3 1271 A 1 HETATM 2 C CAB YM3 . . . B 2 21.486 -0.441 8.478 1 44.18 ? CAB YM3 1271 A 1 HETATM 3 C CAQ YM3 . . . B 2 19.233 -0.834 9.138 1 41.93 ? CAQ YM3 1271 A 1 HETATM 4 C CAR YM3 . . . B 2 17.849 -0.243 9.305 1 35.71 ? CAR YM3 1271 A 1 HETATM 5 C CAG YM3 . . . B 2 17.554 0.958 8.671 1 35.43 ? CAG YM3 1271 A 1 HETATM 6 N NAN YM3 . . . B 2 16.336 1.518 8.787 1 32.45 ? NAN YM3 1271 A 1 HETATM 7 C CAU YM3 . . . B 2 15.345 0.91 9.538 1 29.75 ? CAU YM3 1271 A 1 HETATM 8 N NAO YM3 . . . B 2 14.05 1.31 9.784 1 26.15 ? NAO YM3 1271 A 1 HETATM 9 N NAM YM3 . . . B 2 13.457 0.371 10.589 1 28.7 ? NAM YM3 1271 A 1 HETATM 10 C CAH YM3 . . . B 2 14.357 -0.6 10.851 1 29.08 ? CAH YM3 1271 A 1 HETATM 11 C CAT YM3 . . . B 2 15.578 -0.283 10.191 1 30.46 ? CAT YM3 1271 A 1 HETATM 12 C CAS YM3 . . . B 2 16.844 -0.885 10.084 1 35.95 ? CAS YM3 1271 A 1 HETATM 13 N NAV YM3 . . . B 2 17.106 -2.161 10.774 1 45.01 ? NAV YM3 1271 A 1 HETATM 14 C CAL YM3 . . . B 2 17.796 -2.221 11.998 1 53.39 ? CAL YM3 1271 A 1 HETATM 15 C CAK YM3 . . . B 2 16.095 -3.136 10.673 1 52.19 ? CAK YM3 1271 A 1 HETATM 16 C CAJ YM3 . . . B 2 16.588 -4.508 10.981 1 53.9 ? CAJ YM3 1271 A 1 HETATM 17 O OAP YM3 . . . B 2 17.262 -4.572 12.207 1 57.59 ? OAP YM3 1271 A 1 HETATM 18 C CAW YM3 . . . B 2 18.261 -3.595 12.359 1 58.65 ? CAW YM3 1271 A 1 HETATM 19 C CAI YM3 . . . B 2 19.501 -3.967 11.557 1 60.09 ? CAI YM3 1271 A 1 HETATM 20 N NAA YM3 . . . B 2 20.194 -5.149 11.939 1 60.99 ? NAA YM3 1271 A 1 HETATM 21 O O03 YM3 . . . B 2 20.348 -0.003 9.107 1 48.16 ? O03 YM3 1271 A 1 HETATM 22 O O05 YM3 . . . B 2 19.376 -2.039 9.004 1 46.52 ? O05 YM3 1271 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #