data_2YM4 # _model_server_result.job_id nE5bHjCVaxTqVGxrNJ8JVw _model_server_result.datetime_utc '2024-12-26 19:12:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ym4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1271}' # _entry.id 2YM4 # _exptl.entry_id 2YM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 4-[(2R)-2-(aminomethyl)morpholin-4-yl]-3-(3-cyanophenyl)-1H-pyrazolo[3,4-b]pyridine-5-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.18 _cell.angle_gamma 90 _cell.entry_id 2YM4 _cell.length_a 44.81 _cell.length_b 65.9 _cell.length_c 57.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2YM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 N6 O3' _chem_comp.formula_weight 406.438 _chem_comp.id 4YM _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 4-[(2R)-2-(aminomethyl)morpholin-4-yl]-3-(3-cyanophenyl)-1H-pyrazolo[3,4-b]pyridine-5-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 4YM sing 1 n n C02 O03 4YM sing 2 n n O03 C04 4YM sing 3 n n C04 O05 4YM doub 4 n n C04 C06 4YM sing 5 n n C06 C07 4YM doub 6 n y C06 C22 4YM sing 7 n y C07 N08 4YM sing 8 n y N08 C09 4YM doub 9 n y C09 N10 4YM sing 10 n y C09 C21 4YM sing 11 n y N10 N11 4YM sing 12 n y N11 C12 4YM doub 13 n y C12 C13 4YM sing 14 n n C12 C21 4YM sing 15 n y C13 C14 4YM doub 16 n y C13 C20 4YM sing 17 n y C14 C15 4YM sing 18 n y C15 C16 4YM doub 19 n y C16 C17 4YM sing 20 n y C17 C18 4YM sing 21 n n C17 C20 4YM doub 22 n y C18 N19 4YM trip 23 n n C21 C22 4YM doub 24 n y C22 N23 4YM sing 25 n n N23 C24 4YM sing 26 n n N23 C30 4YM sing 27 n n C24 C25 4YM sing 28 n n C25 O26 4YM sing 29 n n O26 C27 4YM sing 30 n n C27 C28 4YM sing 31 n n C27 C30 4YM sing 32 n n C28 N29 4YM sing 33 n n C01 H01 4YM sing 34 n n C01 H01A 4YM sing 35 n n C01 H01B 4YM sing 36 n n C02 H02 4YM sing 37 n n C02 H02A 4YM sing 38 n n C07 H07 4YM sing 39 n n N10 HN10 4YM sing 40 n n C14 H14 4YM sing 41 n n C15 H15 4YM sing 42 n n C16 H16 4YM sing 43 n n C20 H20 4YM sing 44 n n C24 H24 4YM sing 45 n n C24 H24A 4YM sing 46 n n C25 H25 4YM sing 47 n n C25 H25A 4YM sing 48 n n C27 H27 4YM sing 49 n n C28 H28 4YM sing 50 n n C28 H28A 4YM sing 51 n n N29 HN29 4YM sing 52 n n N29 HN2A 4YM sing 53 n n C30 H30 4YM sing 54 n n C30 H30A 4YM sing 55 n n # _atom_sites.entry_id 2YM4 _atom_sites.fract_transf_matrix[1][1] 0.022316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4YM A 1 1271 1271 4YM 4YM . C 3 EDO A 1 1272 1272 EDO EDO . D 3 EDO A 1 1273 1273 EDO EDO . E 3 EDO A 1 1274 1274 EDO EDO . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . F 4 HOH A 35 2035 2035 HOH HOH . F 4 HOH A 36 2036 2036 HOH HOH . F 4 HOH A 37 2037 2037 HOH HOH . F 4 HOH A 38 2038 2038 HOH HOH . F 4 HOH A 39 2039 2039 HOH HOH . F 4 HOH A 40 2040 2040 HOH HOH . F 4 HOH A 41 2041 2041 HOH HOH . F 4 HOH A 42 2042 2042 HOH HOH . F 4 HOH A 43 2043 2043 HOH HOH . F 4 HOH A 44 2044 2044 HOH HOH . F 4 HOH A 45 2045 2045 HOH HOH . F 4 HOH A 46 2046 2046 HOH HOH . F 4 HOH A 47 2047 2047 HOH HOH . F 4 HOH A 48 2048 2048 HOH HOH . F 4 HOH A 49 2049 2049 HOH HOH . F 4 HOH A 50 2050 2050 HOH HOH . F 4 HOH A 51 2051 2051 HOH HOH . F 4 HOH A 52 2052 2052 HOH HOH . F 4 HOH A 53 2053 2053 HOH HOH . F 4 HOH A 54 2054 2054 HOH HOH . F 4 HOH A 55 2055 2055 HOH HOH . F 4 HOH A 56 2056 2056 HOH HOH . F 4 HOH A 57 2057 2057 HOH HOH . F 4 HOH A 58 2058 2058 HOH HOH . F 4 HOH A 59 2059 2059 HOH HOH . F 4 HOH A 60 2060 2060 HOH HOH . F 4 HOH A 61 2061 2061 HOH HOH . F 4 HOH A 62 2062 2062 HOH HOH . F 4 HOH A 63 2063 2063 HOH HOH . F 4 HOH A 64 2064 2064 HOH HOH . F 4 HOH A 65 2065 2065 HOH HOH . F 4 HOH A 66 2066 2066 HOH HOH . F 4 HOH A 67 2067 2067 HOH HOH . F 4 HOH A 68 2068 2068 HOH HOH . F 4 HOH A 69 2069 2069 HOH HOH . F 4 HOH A 70 2070 2070 HOH HOH . F 4 HOH A 71 2071 2071 HOH HOH . F 4 HOH A 72 2072 2072 HOH HOH . F 4 HOH A 73 2073 2073 HOH HOH . F 4 HOH A 74 2074 2074 HOH HOH . F 4 HOH A 75 2075 2075 HOH HOH . F 4 HOH A 76 2076 2076 HOH HOH . F 4 HOH A 77 2077 2077 HOH HOH . F 4 HOH A 78 2078 2078 HOH HOH . F 4 HOH A 79 2079 2079 HOH HOH . F 4 HOH A 80 2080 2080 HOH HOH . F 4 HOH A 81 2081 2081 HOH HOH . F 4 HOH A 82 2082 2082 HOH HOH . F 4 HOH A 83 2083 2083 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 4YM . . . B 2 21.295 0.478 7.497 1 63.26 ? C01 4YM 1271 A 1 HETATM 2 C C02 4YM . . . B 2 20.687 -0.762 8.066 1 67.08 ? C02 4YM 1271 A 1 HETATM 3 O O03 4YM . . . B 2 19.937 -0.648 9.214 1 70.92 ? O03 4YM 1271 A 1 HETATM 4 C C04 4YM . . . B 2 18.782 -1.394 9.322 1 74.19 ? C04 4YM 1271 A 1 HETATM 5 O O05 4YM . . . B 2 18.835 -2.609 9.266 1 77.13 ? O05 4YM 1271 A 1 HETATM 6 C C06 4YM . . . B 2 17.485 -0.673 9.45 1 73.15 ? C06 4YM 1271 A 1 HETATM 7 C C07 4YM . . . B 2 17.362 0.493 8.689 1 69.64 ? C07 4YM 1271 A 1 HETATM 8 N N08 4YM . . . B 2 16.239 1.225 8.726 1 65.92 ? N08 4YM 1271 A 1 HETATM 9 C C09 4YM . . . B 2 15.171 0.848 9.514 1 65.8 ? C09 4YM 1271 A 1 HETATM 10 N N10 4YM . . . B 2 13.955 1.487 9.661 1 65.74 ? N10 4YM 1271 A 1 HETATM 11 N N11 4YM . . . B 2 13.2 0.768 10.538 1 67.17 ? N11 4YM 1271 A 1 HETATM 12 C C12 4YM . . . B 2 13.918 -0.296 10.943 1 68.25 ? C12 4YM 1271 A 1 HETATM 13 C C13 4YM . . . B 2 13.446 -1.241 11.827 1 69.91 ? C13 4YM 1271 A 1 HETATM 14 C C14 4YM . . . B 2 14.305 -2.133 12.445 1 70.67 ? C14 4YM 1271 A 1 HETATM 15 C C15 4YM . . . B 2 13.816 -3.086 13.329 1 71.97 ? C15 4YM 1271 A 1 HETATM 16 C C16 4YM . . . B 2 12.462 -3.146 13.599 1 72.93 ? C16 4YM 1271 A 1 HETATM 17 C C17 4YM . . . B 2 11.601 -2.257 12.984 1 72.9 ? C17 4YM 1271 A 1 HETATM 18 C C18 4YM . . . B 2 10.148 -2.326 13.278 1 74.62 ? C18 4YM 1271 A 1 HETATM 19 N N19 4YM . . . B 2 9.041 -2.381 13.505 1 78.01 ? N19 4YM 1271 A 1 HETATM 20 C C20 4YM . . . B 2 12.089 -1.303 12.096 1 71.56 ? C20 4YM 1271 A 1 HETATM 21 C C21 4YM . . . B 2 15.208 -0.288 10.296 1 68.68 ? C21 4YM 1271 A 1 HETATM 22 C C22 4YM . . . B 2 16.415 -1.083 10.275 1 73.96 ? C22 4YM 1271 A 1 HETATM 23 N N23 4YM . . . B 2 16.528 -2.299 11.062 1 79.55 ? N23 4YM 1271 A 1 HETATM 24 C C24 4YM . . . B 2 16.389 -3.415 10.216 1 80.95 ? C24 4YM 1271 A 1 HETATM 25 C C25 4YM . . . B 2 16.419 -4.671 11.015 1 83.09 ? C25 4YM 1271 A 1 HETATM 26 O O26 4YM . . . B 2 17.597 -4.763 11.767 1 85.43 ? O26 4YM 1271 A 1 HETATM 27 C C27 4YM . . . B 2 17.852 -3.644 12.581 1 84.35 ? C27 4YM 1271 A 1 HETATM 28 C C28 4YM . . . B 2 16.966 -3.666 13.794 1 83.92 ? C28 4YM 1271 A 1 HETATM 29 N N29 4YM . . . B 2 17.023 -2.384 14.449 1 82.86 ? N29 4YM 1271 A 1 HETATM 30 C C30 4YM . . . B 2 17.691 -2.343 11.852 1 81.57 ? C30 4YM 1271 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #